Glyma12g00920 - SoyBase

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Report for Sequence Feature Glyma12g00920

Feature Type:	gene_model
Chromosome:	Gm12
Start:	493206
stop:	495597
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g00920

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G29990	AT	Annotation by Michelle Graham. TAIR10: prefoldin 6 \| chr1:10507666-10508821 FORWARD LENGTH=129	SoyBase	E_val: 1.00E-71	ISS
GO:0006094	GO-bp	Annotation by Michelle Graham. GO Biological Process: gluconeogenesis	SoyBase	N/A	ISS
GO:0006096	GO-bp	Annotation by Michelle Graham. GO Biological Process: glycolysis	SoyBase	N/A	ISS
GO:0006457	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein folding	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0043622	GO-bp	Annotation by Michelle Graham. GO Biological Process: cortical microtubule organization	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016272	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: prefoldin complex	SoyBase	N/A	ISS
GO:0051082	GO-mf	Annotation by Michelle Graham. GO Molecular Function: unfolded protein binding	SoyBase	N/A	ISS
KOG3478	KOG	Prefoldin subunit 6, KE2 family	JGI		ISS
PTHR21431	Panther	PREFOLDIN SUBUNIT 6	JGI		ISS
PF01920	PFAM	Prefoldin subunit	JGI		ISS
UniRef100_G7K0G0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Prefoldin subunit n=1 Tax=Medicago truncatula RepID=G7K0G0_MEDTR	SoyBase	E_val: 2.00E-75	ISS
UniRef100_I1LNU5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1LNU5_SOYBN	SoyBase	E_val: 3.00E-83	ISS

Expression Patterns of Glyma12g00920

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma12g00920 not represented in the dataset	Glyma12g00920 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g00920

Paralog	Evidence	Comments
Glyma09g36411	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g00920 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g006600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g00920

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma12g00920

Limit To All Plant Sequences

>Glyma12g00920.5   sequence type=transcript   gene model=Glyma12g00920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTGTCATAAAAGGTTTAAAATGTTTTTTGTTTTCCTTTACGTTAGAAAACACTAGAACACGAGTTTGACGGATAGCAATTTCGGACCTCTCTCACTCTCTCGCAAACCCTAGCGACACATCCCTCGTTCGTTCTCGCCCTCACGGATCGCGCGGAGAATTAATTTAGTGGTCAGAAACACAATGAGTTCGTCGAACCTGAGAGATCTCCAACGCGAATTGGAGAACAAAGCCAACGATCTCAGCAAGCTTCAAAAGGAAATTGCAAAGAATCACCAAATGAGAAAGAAGTACACACTCCAGCTTGGCGAGAACGAGCTCGTCCTTAAGGAACTGGATTTATTGAAAGATGACACAAATGTTTATAAGTTGATTGGGCCAGTACTTGTTAAGCAAGATTTGGCCGAGGCCAATGCAAATGTCCGCAAGAGGATCGAATACATCTCAGCTGAATTGAAGCGTCTTGATGCCACTGTTCAAGATTTGGAAGAGAAGCAAAATAGCAAGAAAGATGCAATACTAAAATTGCAACAAAGGATTCAATCACTTCAGGCTGGGAAAGGCAAGGCATAGTTTTCCCTCACATATTGTTCCAGCATTGTAATTTGACCGTGCTAAGGTTGGATGTGCATTTGTATTTTGTGCCTCTTTGTTTTGGACTGAAGTTGACTCTTAGGAATGTGTTTCGGGAAACAATTTGGAAATTAGATTGATATTATTATAGTTGGTATTGGCTCATTTTCAAGAAAATGACCTGTACAAGGTTCTGTGGAAGGCTTAGAGAAGTCATTTGTTGCAAGGGCTACTTTTTGTGGAAAAGCCATTGGCTTTTTTCTAATGCATGGACTATTTTTTTTTTAATCTAGCTTTCAAACTATTGTCTTTTACCACCCTCCATATCTTTCTCTTCTTTCTTTTTGAATGACAGTTCATCAAAACAATTGCTAGATCGAGCACGCGACGCACATAGTCTTTCGAGAGCGGGTTGTCTCCTCTTCAAAACATTTCTACTACTTCCTTGCCCCCCCTGTTCAGAGATTTTTTTGGTGTCTTAAATTGTACTTCGGATTCAGTGAGATTCAAATTTGGTATACGTGAGATTCAAACTTG

>Glyma12g00920.6   sequence type=transcript   gene model=Glyma12g00920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTGTCATAAAAGGTTTAAAATGTTTTTTGTTTTCCTTTACGTTAGAAAACACTAGAACACGAGTTTGACGGATAGCAATTTCGGACCTCTCTCACTCTCTCGCAAACCCTAGCGACACATCCCTCGTTCGTTCTCGCCCTCACGGATCGTCAGTCTCTCTCTCGGTTTCTTTCTAGGTTTTGATTTTTTATTAAACTTGTTTTCTTATCAACTTCTATTAATTGCGTGTTTCGCTGGAACAGGCGCGGAGAATTAATTTAGTGAAGGTCAGAAACACAATGAGTTCGTCGAACCTGAGAGATCTCCAACGCGAATTGGAGAACAAAGCCAACGATCTCAGCAAGCTTCAAAAGGAAATTGCAAAGAATCACCAAATGAGAAAGAAGTACACACTCCAGCTTGGCGAGAACGAGCTCGTCCTTAAGGAACTGGATTTATTGAAAGATGACACAAATGTTTATAAGTTGATTGGGCCAGTACTTGTTAAGCAAGATTTGGCCGAGGCCAATGCAAATGTCCGCAAGAGGATCGAATACATCTCAGCTGAATTGAAGCGTCTTGATGCCACTGTTCAAGATTTGGAAGAGAAGCAAAATAGCAAGAAAGATGCAATACTAAAATTGCAACAAAGGATTCAATCACTTCAGGCTGGGAAAGGCAAGGCATAGTTTTCCCTCACATATTGTTCCAGCATTGTAATTTGACCGTGCTAAGGTTGGATGTGCATTTGTATTTTGTGCCTCTTTGTTTTGGACTGAAGTTGACTCTTAGGAATGTGTTTCGGGAAACAATTTGGAAATTAGATTGATATTATTATAGTTGGTATTGGCTCATTTTCAAGAAAATGACCTGTACAAGGTTCTGTGGAAGGCTTAGAGAAGTCATTTGTTGCAAGGGCTACTTTTTGTGGAAAAGCCATTGGCTTTTTTCTAATGCATGGACTATTTTTTTTTTAATCTAGCTTTCAAACTATTGTCTTTTACCACCCTCCATATCTTTCTCTTCTTTCTTTTTGAATGACAGTTCATCAAAACAATTGCTAGATCGAGCACGCGACGCACATAGTCTTTCGAGAGCGGGTTGTCTCCTCTTCAAAACATTTCTACTACTTCCTTGCCCCCCCTGTTCAGAGATTTTTTTGGTGTCTTAAATTGTACTTCGGATTCAGTGAGATTCAAATTTGGTATACGTGAGATTCAAACTTG

>Glyma12g00920.7   sequence type=transcript   gene model=Glyma12g00920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTGTCATAAAAGGTTTAAAATGTTTTTTGTTTTCCTTTACGTTAGAAAACACTAGAACACGAGTTTGACGGATAGCAATTTCGGACCTCTCTCACTCTCTCGCAAACCCTAGCGACACATCCCTCGTTCGTTCTCGCCCTCACGGATCGCGCGGAGAATTAATTTAGTGAAGGTCAGAAACACAATGAGTTCGTCGAACCTGAGAGATCTCCAACGCGAATTGGAGAACAAAGCCAACGATCTCAGCAAGCTTCAAAAGGAAATTGCAAAGAATCACCAAATGAGAAAGAAGTACACACTCCAGCTTGGCGAGAACGAGCTCGTCCTTAAGGAACTGGATTTATTGAAAGATGACACAAATGTTTATAAGTTGATTGGGCCAGTACTTGTTAAGCAAGATTTGGCCGAGGCCAATGCAAATGTCCGCAAGAGGATCGAATACATCTCAGCTGAATTGAAGCGTCTTGATGCCACTGTTCAAGATTTGGAAGAGAAGCAAAATAGCAAGAAAGATGCAATACTAAAATTGCAACAAAGGATTCAATCACTTCAGGCTGGGAAAGGCAAGGCATAGTTTTCCCTCACATATTGTTCCAGCATTGTAATTTGACCGTGCTAAGGTTGGATGTGCATTTGTATTTTGTGCCTCTTTGTTTTGGACTGAAGTTGACTCTTAGGAATGTGTTTCGGGAAACAATTTGGAAATTAGATTGATATTATTATAGTTGGTATTGGCTCATTTTCAAGAAAATGACCTGTACAAGGTTCTGTGGAAGGCTTAGAGAAGTCATTTGTTGCAAGGGCTACTTTTTGTGGAAAAGCCATTGGCTTTTTTCTAATGCATGGACTATTTTTTTTTTAATCTAGCTTTCAAACTATTGTCTTTTACCACCCTCCATATCTTTCTCTTCTTTCTTTTTGAATGACAGTTCATCAAAACAATTGCTAGATCGAGCACGCGACGCACATAGTCTTTCGAGAGCGGGTTGTCTCCTCTTCAAAACATTTCTACTACTTCCTTGCCCCCCCTGTTCAGAGATTTTTTTGGTGTCTTAAATTGTACTTCGGATTCAGTGAGATTCAAATTTGGTATACGTGAGATTCAAACTTG

>Glyma12g00920.8   sequence type=transcript   gene model=Glyma12g00920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTGTCATAAAAGGTTTAAAATGTTTTTTGTTTTCCTTTACGTTAGAAAACACTAGAACACGAGTTTGACGGATAGCAATTTCGGACCTCTCTCACTCTCTCGCAAACCCTAGCGACACATCCCTCGTTCGTTCTCGCCCTCACGGATCGTCAGTCTCTCTCTCGGTTTCTTTCTAGGTTTTGATTTTTTATTAAACTTGTTTTCTTATCAACTTCTATTAATTGCGTGTTTCGCTGGAACAGGCGCGGAGAATTAATTTAGTGGTCAGAAACACAATGAGTTCGTCGAACCTGAGAGATCTCCAACGCGAATTGGAGAACAAAGCCAACGATCTCAGCAAGCTTCAAAAGGAAATTGCAAAGAATCACCAAATGAGAAAGAAGTACACACTCCAGCTTGGCGAGAACGAGCTCGTCCTTAAGGAACTGGATTTATTGAAAGATGACACAAATGTTTATAAGTTGATTGGGCCAGTACTTGTTAAGCAAGATTTGGCCGAGGCCAATGCAAATGTCCGCAAGAGGATCGAATACATCTCAGCTGAATTGAAGCGTCTTGATGCCACTGTTCAAGATTTGGAAGAGAAGCAAAATAGCAAGAAAGATGCAATACTAAAATTGCAACAAAGGATTCAATCACTTCAGGCTGGGAAAGGCAAGGCATAGTTTTCCCTCACATATTGTTCCAGCATTGTAATTTGACCGTGCTAAGGTTGGATGTGCATTTGTATTTTGTGCCTCTTTGTTTTGGACTGAAGTTGACTCTTAGGAATGTGTTTCGGGAAACAATTTGGAAATTAGATTGATATTATTATAGTTGGTATTGGCTCATTTTCAAGAAAATGACCTGTACAAGGTTCTGTGGAAGGCTTAGAGAAGTCATTTGTTGCAAGGGCTACTTTTTGTGGAAAAGCCATTGGCTTTTTTCTAATGCATGGACTATTTTTTTTTTAATCTAGCTTTCAAACTATTGTCTTTTACCACCCTCCATATCTTTCTCTTCTTTCTTTTTGAATGACAGTTCATCAAAACAATTGCTAGATCGAGCACGCGACGCACATAGTCTTTCGAGAGCGGGTTGTCTCCTCTTCAAAACATTTCTACTACTTCCTTGCCCCCCCTGTTCAGAGATTTTTTTGGTGTCTTAAATTGTACTTCGGATTCAGTGAGATTCAAATTTGGTATACGTGAGATTCAAACTTG

Coding sequences of Glyma12g00920

Limit To All Plant Sequences

>Glyma12g00920.4   sequence type=CDS   gene model=Glyma12g00920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTCACTTTTACCAATCGAATACAATTTATGAGCAGTCTGCATTGGATGATGATATATGGTTTATATTACATTCAATTCACTGTGTATGTTATTGTTATGTTATGCCAATTGCCACCGAAGAAGGTCAGAAACACAATGAGTTCGTCGAACCTGAGAGATCTCCAACGCGAATTGGAGAACAAAGCCAACGATCTCAGCAAGCTTCAAAAGGAAATTGCAAAGAATCACCAAATGAGAAAGAAGTACACACTCCAGCTTGGCGAGAACGAGCTCGTCCTTAAGGAACTGGATTTATTGAAAGATGACACAAATGTTTATAAGTTGATTGGGCCAGTACTTGTTAAGCAAGATTTGGCCGAGGCCAATGCAAATGTCCGCAAGAGGATCGAATACATCTCAGCTGAATTGAAGCGTCTTGATGCCACTGTTCAAGATTTGGAAGAGAAGCAAAATAGCAAGAAAGATGCAATACTAAAATTGCAACAAAGGATTCAATCACTTCAGGCTGGGAAAGGCAAGGCATAG

>Glyma12g00920.5   sequence type=CDS   gene model=Glyma12g00920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTTCGTCGAACCTGAGAGATCTCCAACGCGAATTGGAGAACAAAGCCAACGATCTCAGCAAGCTTCAAAAGGAAATTGCAAAGAATCACCAAATGAGAAAGAAGTACACACTCCAGCTTGGCGAGAACGAGCTCGTCCTTAAGGAACTGGATTTATTGAAAGATGACACAAATGTTTATAAGTTGATTGGGCCAGTACTTGTTAAGCAAGATTTGGCCGAGGCCAATGCAAATGTCCGCAAGAGGATCGAATACATCTCAGCTGAATTGAAGCGTCTTGATGCCACTGTTCAAGATTTGGAAGAGAAGCAAAATAGCAAGAAAGATGCAATACTAAAATTGCAACAAAGGATTCAATCACTTCAGGCTGGGAAAGGCAAGGCATAG

>Glyma12g00920.6   sequence type=CDS   gene model=Glyma12g00920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTTCGTCGAACCTGAGAGATCTCCAACGCGAATTGGAGAACAAAGCCAACGATCTCAGCAAGCTTCAAAAGGAAATTGCAAAGAATCACCAAATGAGAAAGAAGTACACACTCCAGCTTGGCGAGAACGAGCTCGTCCTTAAGGAACTGGATTTATTGAAAGATGACACAAATGTTTATAAGTTGATTGGGCCAGTACTTGTTAAGCAAGATTTGGCCGAGGCCAATGCAAATGTCCGCAAGAGGATCGAATACATCTCAGCTGAATTGAAGCGTCTTGATGCCACTGTTCAAGATTTGGAAGAGAAGCAAAATAGCAAGAAAGATGCAATACTAAAATTGCAACAAAGGATTCAATCACTTCAGGCTGGGAAAGGCAAGGCATAG

>Glyma12g00920.7   sequence type=CDS   gene model=Glyma12g00920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTTCGTCGAACCTGAGAGATCTCCAACGCGAATTGGAGAACAAAGCCAACGATCTCAGCAAGCTTCAAAAGGAAATTGCAAAGAATCACCAAATGAGAAAGAAGTACACACTCCAGCTTGGCGAGAACGAGCTCGTCCTTAAGGAACTGGATTTATTGAAAGATGACACAAATGTTTATAAGTTGATTGGGCCAGTACTTGTTAAGCAAGATTTGGCCGAGGCCAATGCAAATGTCCGCAAGAGGATCGAATACATCTCAGCTGAATTGAAGCGTCTTGATGCCACTGTTCAAGATTTGGAAGAGAAGCAAAATAGCAAGAAAGATGCAATACTAAAATTGCAACAAAGGATTCAATCACTTCAGGCTGGGAAAGGCAAGGCATAG

>Glyma12g00920.8   sequence type=CDS   gene model=Glyma12g00920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTTCGTCGAACCTGAGAGATCTCCAACGCGAATTGGAGAACAAAGCCAACGATCTCAGCAAGCTTCAAAAGGAAATTGCAAAGAATCACCAAATGAGAAAGAAGTACACACTCCAGCTTGGCGAGAACGAGCTCGTCCTTAAGGAACTGGATTTATTGAAAGATGACACAAATGTTTATAAGTTGATTGGGCCAGTACTTGTTAAGCAAGATTTGGCCGAGGCCAATGCAAATGTCCGCAAGAGGATCGAATACATCTCAGCTGAATTGAAGCGTCTTGATGCCACTGTTCAAGATTTGGAAGAGAAGCAAAATAGCAAGAAAGATGCAATACTAAAATTGCAACAAAGGATTCAATCACTTCAGGCTGGGAAAGGCAAGGCATAG

Predicted protein sequences of Glyma12g00920

Limit To All Plant Sequences

>Glyma12g00920.4   sequence type=predicted peptide   gene model=Glyma12g00920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFTFTNRIQFMSSLHWMMIYGLYYIQFTVYVIVMLCQLPPKKVRNTMSSSNLRDLQRELENKANDLSKLQKEIAKNHQMRKKYTLQLGENELVLKELDLLKDDTNVYKLIGPVLVKQDLAEANANVRKRIEYISAELKRLDATVQDLEEKQNSKKDAILKLQQRIQSLQAGKGKA*

>Glyma12g00920.5   sequence type=predicted peptide   gene model=Glyma12g00920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSSNLRDLQRELENKANDLSKLQKEIAKNHQMRKKYTLQLGENELVLKELDLLKDDTNVYKLIGPVLVKQDLAEANANVRKRIEYISAELKRLDATVQDLEEKQNSKKDAILKLQQRIQSLQAGKGKA*

>Glyma12g00920.6   sequence type=predicted peptide   gene model=Glyma12g00920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSSNLRDLQRELENKANDLSKLQKEIAKNHQMRKKYTLQLGENELVLKELDLLKDDTNVYKLIGPVLVKQDLAEANANVRKRIEYISAELKRLDATVQDLEEKQNSKKDAILKLQQRIQSLQAGKGKA*

>Glyma12g00920.7   sequence type=predicted peptide   gene model=Glyma12g00920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSSNLRDLQRELENKANDLSKLQKEIAKNHQMRKKYTLQLGENELVLKELDLLKDDTNVYKLIGPVLVKQDLAEANANVRKRIEYISAELKRLDATVQDLEEKQNSKKDAILKLQQRIQSLQAGKGKA*

>Glyma12g00920.8   sequence type=predicted peptide   gene model=Glyma12g00920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSSNLRDLQRELENKANDLSKLQKEIAKNHQMRKKYTLQLGENELVLKELDLLKDDTNVYKLIGPVLVKQDLAEANANVRKRIEYISAELKRLDATVQDLEEKQNSKKDAILKLQQRIQSLQAGKGKA*

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