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Report for Sequence Feature Glyma12g00890
Feature Type: gene_model
Chromosome: Gm12
Start: 479171
stop: 483577
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma12g00890
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G61480 AT
Annotation by Michelle Graham. TAIR10: Leucine-rich repeat protein kinase family protein | chr5:24724541-24727842 REVERSE LENGTH=1041
SoyBase E_val: 0 ISS
GO:0006468 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein phosphorylation
SoyBase N/A ISS
GO:0009855 GO-bp
Annotation by Michelle Graham. GO Biological Process: determination of bilateral symmetry
SoyBase N/A ISS
GO:0009887 GO-bp
Annotation by Michelle Graham. GO Biological Process: organ morphogenesis
SoyBase N/A ISS
GO:0009944 GO-bp
Annotation by Michelle Graham. GO Biological Process: polarity specification of adaxial/abaxial axis
SoyBase N/A ISS
GO:0010014 GO-bp
Annotation by Michelle Graham. GO Biological Process: meristem initiation
SoyBase N/A ISS
GO:0010051 GO-bp
Annotation by Michelle Graham. GO Biological Process: xylem and phloem pattern formation
SoyBase N/A ISS
GO:0010067 GO-bp
Annotation by Michelle Graham. GO Biological Process: procambium histogenesis
SoyBase N/A ISS
GO:0010073 GO-bp
Annotation by Michelle Graham. GO Biological Process: meristem maintenance
SoyBase N/A ISS
GO:0010075 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of meristem growth
SoyBase N/A ISS
GO:0010089 GO-bp
Annotation by Michelle Graham. GO Biological Process: xylem development
SoyBase N/A ISS
GO:0010223 GO-bp
Annotation by Michelle Graham. GO Biological Process: secondary shoot formation
SoyBase N/A ISS
GO:0048439 GO-bp
Annotation by Michelle Graham. GO Biological Process: flower morphogenesis
SoyBase N/A ISS
GO:0048519 GO-bp
Annotation by Michelle Graham. GO Biological Process: negative regulation of biological process
SoyBase N/A ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
GO:0004672 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein kinase activity
SoyBase N/A ISS
GO:0004674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity
SoyBase N/A ISS
GO:0005515 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein binding
SoyBase N/A ISS
GO:0005524 GO-mf
Annotation by Michelle Graham. GO Molecular Function: ATP binding
SoyBase N/A ISS
GO:0016772 GO-mf
Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups
SoyBase N/A ISS
KOG1187
KOG
Serine/threonine protein kinase
JGI ISS
PTHR24420 Panther
FAMILY NOT NAMED
JGI ISS
PTHR24420:SF883 Panther
JGI ISS
PF00069 PFAM
Protein kinase domain
JGI ISS
PF00560 PFAM
Leucine Rich Repeat
JGI ISS
PF08263 PFAM
Leucine rich repeat N-terminal domain
JGI ISS
UniRef100_I1LNU1 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LNU1_SOYBN
SoyBase E_val: 0 ISS
UniRef100_Q9FII5 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Leucine-rich repeat receptor-like protein kinase TDR n=1 Tax=Arabidopsis thaliana RepID=TDR_ARATH
SoyBase E_val: 0 ISS
Expression Patterns of Glyma12g00890
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma12g00890
Paralog Evidence Comments
Glyma09g36460 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma12g00890 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.12g006300 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma12g00890
Coding sequences of Glyma12g00890
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma12g00890.1 sequence type=CDS gene model=Glyma12g00890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAAACCTTTTCTTCTCTTTCTCATCACATTCTCCTTCCTCTGCCAAACACACCTACTCCTAGTTCTCTCTGCCACAACCCCCTTGTCCCTCCAACTCATCGCCCTCCTCTCCATAAAATCGTCCCTCCTAGACCCTCTCAATAACCTCCATGACTGGGACCCCTCCCCCTCCCCCTCCAATCCCCAACACCCAATATGGTGTTCCTGGAGAGCCATCACATGCCACTCCAAGACATCACAAATCACCACCCTAGACCTCTCCCACCTCAATCTCTCCGGCACTATCTCCCCCCAAATCCGCCACCTTTCCACCTTAAACCACCTTAACCTCAGTGGAAATGACTTTACCGGCAGTTTCCAATACGCCATTTTCGAACTAACAGAACTGAGAACACTAGACATCAGCCACAATTCCTTCAACTCAACCTTCCCACCGGGTATATCAAAACTCAAGTTCCTCAGGCACTTCAACGCCTACAGCAACAGCTTCACCGGCCCTCTCCCCCAAGAGTTAACCACCCTTCGTTTCCTCGAACAACTGAACCTGGGCGGAAGTTACTTCAGCGACGGGATTCCACCAAGTTACGGCACTTTCCCGAGACTCAAGTTTCTAGACATAGCCGGTAATGCCTTGGAAGGTCCACTCCCTCCCCAACTAGGCCACTTGGCTGAACTAGAACACTTGGAAATTGGATACAACAATTTCTCAGGAACACTACCCTCAGAACTCGCATTGCTCTATAACCTCAAATACTTGGACATCTCAAGCACTAACATTTCAGGGAACGTGATTCCGGAGCTGGGAAACCTCACCAAGCTGGAGACACTTCTGCTGTTCAAGAACAGGTTAACAGGGGAAATACCATCAACCATAGGAAAATTGAAGTCCCTTAAAGGCCTTGACCTCTCAGACAACGAACTCACTGGGCCAATCCCCACTCAAGTCACCATGCTAACCGAACTAACCACGCTCAACCTAATGGACAACAACCTCACAGGAGAAATACCACAGGGAATTGGAGAACTACCTAAGCTCGACACTCTGTTCCTCTTCAACAACTCACTCACTGGAACCCTCCCTCAGCAACTTGGCTCCAACGGCTTACTGCTGAAACTCGACGTTTCCACAAACTCACTCGAAGGTCCAATCCCTGAAAATGTGTGCAAAGGTAACAAGCTCGTCAGACTCATACTCTTCCTCAACAGATTCACCGGTTCTCTCCCACCGTCCCTTTCCAACTGCACCTCACTCGCTAGGGTTCGCATCCAAAACAATTTCCTCAGCGGTTCAATCCCCGAAGGCCTCACGCTCCTCCCTAACCTAACGTTTCTAGATATCAGCACCAACAACTTCCGTGGTCAAATTCCGGAACGCTTAGGTAACTTGCAGTACTTCAACATCTCCGGAAACTCCTTCGGAACCTCACTACCGGCCTCTATTTGGAATGCTACTAATCTTGCGATCTTCTCTGCTGCTTCGTCGAACATCACTGGTCAAATTCCTGATTTCATAGGGTGTCAGGCATTGTATAAGCTCGAACTGCAGGGAAATTCCATCAACGGTACGATTCCTTGGGACGTTGGACACTGCCAGAAGTTGATTTTACTGAATCTGAGTCGAAACTCACTCACCGGTATCATTCCCTGGGAAATCTCAGCTCTCCCTTCCATCACCGACGTTGATCTCTCTCACAATTCACTCACCGGAACCATTCCTTCGAACTTCAACAACTGCTCAACGCTCGAGAATTTCAACGTCAGCTTCAACTCCCTCACCGGTCCAATTCCGTCGACCGGCATTTTCCCGAACCTACATCCTTCCTCCTACTCCGGCAACCAGGGCCTATGCGGCGGCGTGTTGGCCAAACCCTGCGCAGCCGACGCCCTCTCCGCCGCCGACAACCAGGTCGACGTCAGGCGACAGCAGCCGAAGCGAACTGCCGGTGCAATTGTGTGGATCGTCGCGGCGGCGTTCGGAATCGGCCTCTTCGTGCTCGTCGCCGGAACGCGCTGCTTTCACGCGAACTACAACAGGCGTTTCGGCGACGAGGTGGGACCGTGGAAGTTAACGGCGTTCCAGCGTTTGAATTTCACGGCGGAGGACGTGCTGGAGTGTTTGTCGATGTCCGATAAGATACTGGGGATGGGATCCACGGGAACGGTTTACAGATCGGAAATGCCAGGTGGCGAGATCATAGCGGTTAAGAAGCTGTGGGGGAAGCAGAAGGAGAATATCAGAAGGAGGAGAGGGGTTCTGGCAGAGGTGGAGGTGTTGGGAAACGTGAGGCACAGGAATATCGTGAGGTTGTTAGGGTGCTGCAGCAACAAGGAGTGCACCATGCTGCTATACGAGTACATGCCCAATGGAAACTTGGATGATTGGTTGCATGGCAAAAATAAAGGAGATAATTTGGTCGCCGATTGGTTCACTAGGTATAAGATCGCCTTGGGCGTGGCTCAGGGAATCTGCTATCTTCACCACGACTGTGATCCCGTCATCGTGCATCGCGATCTCAAACCTAGTAACATATTATTGGACGCTGAGATGGAGGCCAGAGTCGCAGATTTTGGTGTCGCCAAGTTGATTCAGACCGACGAGTCCATGTCTGTCATTGCCGGTTCCTATGGCTACATTGCTCCAGAATATGCTTACACCCTTCAAGTCGATGAAAAGAGTGACATTTACAGCTACGGAGTGGTGTTGATGGAGATCCTAAGTGGAAAACGTTCGGTTGATGCAGAATTTGGCGATGGGAACAGCGTTGTTGATTGGGTTAGGTCTAAGATAAAGTCTAAAGATGGCATTGATGACATATTGGACAAGAATGCAGGGGCAGGGTGCACCTCAGTGAGAGAAGAGATGATACAAATGCTTAGAATTGCATTGCTTTGCACCAGTAGAAACCCAGCGGATAGGCCTTCTATGAGGGATGTTGTGTTGATGCTGCAAGAGGCCAAGCCAAAGAGGAAATTGCTTGATGGTGTTCTAGGTCGATGTGCTGGGGACAATGTGGTTGTTGGTGGTGACATTCCTTTGCCACAAAAGCCAATTGCGGATCAATGTTAA
Predicted protein sequences of Glyma12g00890
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma12g00890.1 sequence type=predicted peptide gene model=Glyma12g00890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MKPFLLFLITFSFLCQTHLLLVLSATTPLSLQLIALLSIKSSLLDPLNNLHDWDPSPSPSNPQHPIWCSWRAITCHSKTSQITTLDLSHLNLSGTISPQIRHLSTLNHLNLSGNDFTGSFQYAIFELTELRTLDISHNSFNSTFPPGISKLKFLRHFNAYSNSFTGPLPQELTTLRFLEQLNLGGSYFSDGIPPSYGTFPRLKFLDIAGNALEGPLPPQLGHLAELEHLEIGYNNFSGTLPSELALLYNLKYLDISSTNISGNVIPELGNLTKLETLLLFKNRLTGEIPSTIGKLKSLKGLDLSDNELTGPIPTQVTMLTELTTLNLMDNNLTGEIPQGIGELPKLDTLFLFNNSLTGTLPQQLGSNGLLLKLDVSTNSLEGPIPENVCKGNKLVRLILFLNRFTGSLPPSLSNCTSLARVRIQNNFLSGSIPEGLTLLPNLTFLDISTNNFRGQIPERLGNLQYFNISGNSFGTSLPASIWNATNLAIFSAASSNITGQIPDFIGCQALYKLELQGNSINGTIPWDVGHCQKLILLNLSRNSLTGIIPWEISALPSITDVDLSHNSLTGTIPSNFNNCSTLENFNVSFNSLTGPIPSTGIFPNLHPSSYSGNQGLCGGVLAKPCAADALSAADNQVDVRRQQPKRTAGAIVWIVAAAFGIGLFVLVAGTRCFHANYNRRFGDEVGPWKLTAFQRLNFTAEDVLECLSMSDKILGMGSTGTVYRSEMPGGEIIAVKKLWGKQKENIRRRRGVLAEVEVLGNVRHRNIVRLLGCCSNKECTMLLYEYMPNGNLDDWLHGKNKGDNLVADWFTRYKIALGVAQGICYLHHDCDPVIVHRDLKPSNILLDAEMEARVADFGVAKLIQTDESMSVIAGSYGYIAPEYAYTLQVDEKSDIYSYGVVLMEILSGKRSVDAEFGDGNSVVDWVRSKIKSKDGIDDILDKNAGAGCTSVREEMIQMLRIALLCTSRNPADRPSMRDVVLMLQEAKPKRKLLDGVLGRCAGDNVVVGGDIPLPQKPIADQC*