Glyma12g00800 - SoyBase

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Report for Sequence Feature Glyma12g00800

Feature Type:	gene_model
Chromosome:	Gm12
Start:	410353
stop:	414176
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g00800

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G62390	AT	Annotation by Michelle Graham. TAIR10: BCL-2-associated athanogene 7 \| chr5:25052377-25054170 REVERSE LENGTH=446	SoyBase	E_val: 3.00E-55	ISS
GO:0006457	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein folding	SoyBase	N/A	ISS
GO:0034605	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to heat	SoyBase	N/A	ISS
GO:0034620	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to unfolded protein	SoyBase	N/A	ISS
GO:0046685	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to arsenic-containing substance	SoyBase	N/A	ISS
GO:0070417	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to cold	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0005516	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calmodulin binding	SoyBase	N/A	ISS
UniRef100_D7MLV8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: BCL-2-associated athanogene 7 n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7MLV8_ARALL	SoyBase	E_val: 9.00E-55	ISS
UniRef100_I1LNS8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LNS8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma12g00800

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g00800

Paralog	Evidence	Comments
Glyma09g36560	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g00800 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g005300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g00800

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma12g00800

Limit To All Plant Sequences

>Glyma12g00800.2   sequence type=transcript   gene model=Glyma12g00800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGCGTGCATGACTTACTCAATCGGGTGATAATTGAACTTGTAAATATTGAGTCAAATTATTTGACTAACTAATTTTAAGAACGACTTAAAGTTAAACATAGCTCGACTGGATCTATTAGCTTGACAAAGGAATAGGGAGAAAAGGATACAGTGATGTGACATTATTAAGGGTGTTGGTTGCAGAAACACTTTCCTCCGATCACAAAGGAATAGGGAGAAAAGGGCCCCAACGAGTCTAAAGATTCCGAGTACGCGGCGCCCCAAGTTCATACCTAATCCGTCATCCCCCACTTCAAATTCCACTTATACCCTCATCATTTCCTTTCCCTTTAAACCCATCATCATTCCCTTTCAACATCACATTATTCCCAACGAGTTGACACCGATTCCACTCACCCAACCATGAGCCGATTCAGGCGATTTGAGCTCATCGAACAGCCACCTTTCTTCCCCTCATGCTACTCTTCTCCCTTCCTCGTCCAAGACTCACTTTCTCTCGACCTCGACCTGTTGCCACTTCCCAGCCCCTTCGACGCTTTCGCAGATCTGCTCCACGCGCCGTCGTTGGCTTACCGGCGCCTGGAGAGGCAGCTCGATAATGAGTTGCGCTTGCAGAGCCTCTCTGACCGCGTCGCCGAGCTGGAATCGCGGTTCCACCGTGTGCTCGGCGGAGATCGGAAGTACACGTGGACGGCGGAGATCAAGGGAGCGGAGAAGAATGGGTTCGATAGGAAGTACAAGTGGGTAGCGGAGATCGCTGAGGAAGAAGAGAAGAAGAAGAAGAAGATGAAGAAGCAGGTGAAGGTGCCGAAGGATAGGAACGTGACGTGGGATGCTGAGGAAGAGGAGGAAAACAAGAAGAGGTTGCTGAAGGGTGTTGCCAAGAACGTGAAATGGACGGCTGAGATCACGGGAAAAGGGGAGAAGAGTGGGAGCTCGAGAAAGTACACGTTTCAGGTGCAGAGTGGGGATGCTGAGAAGAAAAAGGAGAAGGAGAAGGAGAAGGAGAAGAAGAAGGGAAATGGATCGCGCATTGTGGAGATTCACGAGCCAAGTGGTCATAGAGATGTGGTTTTGAGACAGGCATTTGCCAAGAGGTTCGGAGCTGTTCAAAATGAGAGGGGCAAAAAGAAGGACTTGTCTCCTCAAGATGCTGCATTGTTGATCCAGATCAGCTTTAGAGCTTACTTGATCCGTAGGTCAAAGGCTCTTCGTGCCCTTAGAGAACTGGCCATTGCAAAATCTAAATTAAAGGAAATCAGAGCCCAGTTCAATAACTTTTCCTACCGACGTCATGTAGCTTGTAATGCGGAGGAACGCCAGCGATTTTCTGAGAAAATAATTGTCTTGCTCCTTACTGTTGATGCCATTGAGGGAGCTGATATTATGGTAAGATCTGCCAAGAGGTCAATGGTGGGATGAGCTGGAAGCAATGCTTGATGTGGTAGATCCCCAGCCTGGTGGAAGATCAGCATCACTCTCCTCCTTCAAAAGAAGGACATTTGATATGCCTGATGGAGTCATCCGGAAGGAAATTGAAGAAGGGGTTGCACAGGTTGTGCAAATGCTTGAAGAAGCAGAGAATAGCAGCGAAGCATGACTTTGAGATCAAGAAAGTAATATTTTATATGTTTATTTCGAGCTTTCCTTCTGCTGTTGTAGTTTGTTGGTAGAGACGTATTTTAATCTAGGATTTCGAGACTCCTAAATTAGGCTTTTCCTCCAATGCTGTTTGTTTTGCTGAACTTTTGGCACATTCTGGACGAAAAGATTGGCTTGTGTTGGAGCTGTGTTATTTTACTATGACGATTTAGAGAACCTTGTTCATTTGTATCTATCCTTTAGTCTGCAGTAAATAAGTTAGTCTCAAATGCGAATGCGATGCATCTTATTTCTCTGTTC

Coding sequences of Glyma12g00800

Limit To All Plant Sequences

>Glyma12g00800.1   sequence type=CDS   gene model=Glyma12g00800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCCGATTCAGGCGATTTGAGCTCATCGAACAGCCACCTTTCTTCCCCTCATGCTACTCTTCTCCCTTCCTCGTCCAAGACTCACTTTCTCTCGACCTCGACCTGTTGCCACTTCCCAGCCCCTTCGACGCTTTCGCAGATCTGCTCCACGCGCCGTCGTTGGCTTACCGGCGCCTGGAGAGGCAGCTCGATAATGAGTTGCGCTTGCAGAGCCTCTCTGACCGCGTCGCCGAGCTGGAATCGCGGTTCCACCGTGTGCTCGGCGGAGATCGGAAGTACACGTGGACGGCGGAGATCAAGGGAGCGGAGAAGAATGGGTTCGATAGGAAGTACAAGTGGGTAGCGGAGATCGCTGAGGAAGAAGAGAAGAAGAAGAAGAAGATGAAGAAGCAGGTGAAGGTGCCGAAGGATAGGAACGTGACGTGGGATGCTGAGGAAGAGGAGGAAAACAAGAAGAGGTTGCTGAAGGGTGTTGCCAAGAACGTGAAATGGACGGCTGAGATCACGGGAAAAGGGGAGAAGAGTGGGAGCTCGAGAAAGTACACGTTTCAGGTGCAGAGTGGGGATGCTGAGAAGAAAAAGGAGAAGGAGAAGGAGAAGGAGAAGAAGAAGGGAAATGGATCGCGCATTGTGGAGATTCACGAGCCAAGTGGTCATAGAGATGTGGTTTTGAGACAGGCATTTGCCAAGAGGTTCGGAGCTGTTCAAAATGAGAGGGGCAAAAAGAAGGACTTGTCTCCTCAAGATGCTGCATTGTTGATCCAGATCAGCTTTAGAGCTTACTTGATCCGTAGGTCAAAGGCTCTTCGTGCCCTTAGAGAACTGGCCATTGCAAAATCTAAATTAAAGGAAATCAGAGCCCAGTTCAATAACTTTTCCTACCGACGTCATGTAGCTTGTAATGCGGAGGAACGCCAGCGATTTTCTGAGAAAATAATTGTCTTGCTCCTTACTGTTGATGCCATTGAGGTAGTGATCTCCATTTTTGGATCTTTCTTTGTGGAACAGATTGAATTTTTTCCTCAATTTTTGAACTGCTAA

>Glyma12g00800.2   sequence type=CDS   gene model=Glyma12g00800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCCGATTCAGGCGATTTGAGCTCATCGAACAGCCACCTTTCTTCCCCTCATGCTACTCTTCTCCCTTCCTCGTCCAAGACTCACTTTCTCTCGACCTCGACCTGTTGCCACTTCCCAGCCCCTTCGACGCTTTCGCAGATCTGCTCCACGCGCCGTCGTTGGCTTACCGGCGCCTGGAGAGGCAGCTCGATAATGAGTTGCGCTTGCAGAGCCTCTCTGACCGCGTCGCCGAGCTGGAATCGCGGTTCCACCGTGTGCTCGGCGGAGATCGGAAGTACACGTGGACGGCGGAGATCAAGGGAGCGGAGAAGAATGGGTTCGATAGGAAGTACAAGTGGGTAGCGGAGATCGCTGAGGAAGAAGAGAAGAAGAAGAAGAAGATGAAGAAGCAGGTGAAGGTGCCGAAGGATAGGAACGTGACGTGGGATGCTGAGGAAGAGGAGGAAAACAAGAAGAGGTTGCTGAAGGGTGTTGCCAAGAACGTGAAATGGACGGCTGAGATCACGGGAAAAGGGGAGAAGAGTGGGAGCTCGAGAAAGTACACGTTTCAGGTGCAGAGTGGGGATGCTGAGAAGAAAAAGGAGAAGGAGAAGGAGAAGGAGAAGAAGAAGGGAAATGGATCGCGCATTGTGGAGATTCACGAGCCAAGTGGTCATAGAGATGTGGTTTTGAGACAGGCATTTGCCAAGAGGTTCGGAGCTGTTCAAAATGAGAGGGGCAAAAAGAAGGACTTGTCTCCTCAAGATGCTGCATTGTTGATCCAGATCAGCTTTAGAGCTTACTTGATCCGTAGGTCAAAGGCTCTTCGTGCCCTTAGAGAACTGGCCATTGCAAAATCTAAATTAAAGGAAATCAGAGCCCAGTTCAATAACTTTTCCTACCGACGTCATGTAGCTTGTAATGCGGAGGAACGCCAGCGATTTTCTGAGAAAATAATTGTCTTGCTCCTTACTGTTGATGCCATTGAGGGAGCTGATATTATGGTAAGATCTGCCAAGAGGTCAATGGTGGGATGA

Predicted protein sequences of Glyma12g00800

Limit To All Plant Sequences

>Glyma12g00800.1   sequence type=predicted peptide   gene model=Glyma12g00800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSRFRRFELIEQPPFFPSCYSSPFLVQDSLSLDLDLLPLPSPFDAFADLLHAPSLAYRRLERQLDNELRLQSLSDRVAELESRFHRVLGGDRKYTWTAEIKGAEKNGFDRKYKWVAEIAEEEEKKKKKMKKQVKVPKDRNVTWDAEEEEENKKRLLKGVAKNVKWTAEITGKGEKSGSSRKYTFQVQSGDAEKKKEKEKEKEKKKGNGSRIVEIHEPSGHRDVVLRQAFAKRFGAVQNERGKKKDLSPQDAALLIQISFRAYLIRRSKALRALRELAIAKSKLKEIRAQFNNFSYRRHVACNAEERQRFSEKIIVLLLTVDAIEVVISIFGSFFVEQIEFFPQFLNC*

>Glyma12g00800.2   sequence type=predicted peptide   gene model=Glyma12g00800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSRFRRFELIEQPPFFPSCYSSPFLVQDSLSLDLDLLPLPSPFDAFADLLHAPSLAYRRLERQLDNELRLQSLSDRVAELESRFHRVLGGDRKYTWTAEIKGAEKNGFDRKYKWVAEIAEEEEKKKKKMKKQVKVPKDRNVTWDAEEEEENKKRLLKGVAKNVKWTAEITGKGEKSGSSRKYTFQVQSGDAEKKKEKEKEKEKKKGNGSRIVEIHEPSGHRDVVLRQAFAKRFGAVQNERGKKKDLSPQDAALLIQISFRAYLIRRSKALRALRELAIAKSKLKEIRAQFNNFSYRRHVACNAEERQRFSEKIIVLLLTVDAIEGADIMVRSAKRSMVG*

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