Glyma12g00790 - SoyBase

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Report for Sequence Feature Glyma12g00790

Feature Type:	gene_model
Chromosome:	Gm12
Start:	397735
stop:	403980
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g00790

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G51460	AT	Annotation by Michelle Graham. TAIR10: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein \| chr5:20902266-20904292 FORWARD LENGTH=384	SoyBase	E_val: 0	ISS
GO:0005992	GO-bp	Annotation by Michelle Graham. GO Biological Process: trehalose biosynthetic process	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004805	GO-mf	Annotation by Michelle Graham. GO Molecular Function: trehalose-phosphatase activity	SoyBase	N/A	ISS
PTHR10788	Panther	TREHALOSE-6-PHOSPHATE SYNTHASE	JGI		ISS
PF02358	PFAM	Trehalose-phosphatase	JGI		ISS
UniRef100_B9R9S0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Trehalose-6-phosphate synthase, putative n=1 Tax=Ricinus communis RepID=B9R9S0_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1LNS7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LNS7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma12g00790

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma12g00790 not represented in the dataset	Glyma12g00790 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g00790

Paralog	Evidence	Comments
Glyma09g36570	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g00790 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g005200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g00790

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma12g00790

Limit To All Plant Sequences

>Glyma12g00790.2   sequence type=transcript   gene model=Glyma12g00790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGGGCGAGAAGAGGAATTCAGGGGGCGTTTTTTATTGGTGCTGTTTCCCAATTCAACAACCGAGGAAGGTTTCCTTGTGAAGCACGTTTGGTGAGGGGGCGAAACGCTATAAATACCACGATCCTTATTTACCTGTTTCTTTCTTCCCTTCTTCGCCGCTTTGCTTTGCGCACCGTTTCGTTTCGTTTCGTTTCACTATTTTTTTCAGGTGAATATTATTGCGCTTTTCGTGTTTCTCCCCGAAAGTACAAATAACGCATTGCCTTCCCTATTGTCTCTGTGTCCGTGTTTGGCTGCCCATAATATTACCCCATTTTTAGCTTCTGCCAAACAACAACTTGTGCCTTTTTTTTTGTCTCCTTTCTTATTTGTTTCTTTTTAGCCTTTTTGTTTTTTTATTGGCCGCCAAACTAAAAACAATATCAGTATTTGCGTCTTTTAATCTGGTATTCCTCTCTTCTGACTGGTGCTTCGTTTTCGCCTTTCAAGATATTTAGACGAAAACAAGAATCCGCATTCTGATTCTGAAGATTCATGTCTAATCTCATTTCTTTCTTCCCTTGGTTGGAGCTCGTTTTTTAGGAGCTCAGCAGTTGATGGACTGTTACCCCAAGAGCAGTGACAAGAAAACATTAAAGAGGTGGTTTTTTATTGATAAAAGAGTTGGGTGAAGTGGAAATCTGATAAATATTATTTTGATTGGTACTCTATACTCCTTAAAGTTCTTACATTGTTGCTGGACTGTAAATTGATTTAAAATCTGGATCCCATGGACTTGAAGTCGAATCATACTCCTGTTCTCACTGATGCTGCACCTGTAACAAAGTCTAGACTGGGTGTGCATTCCAGTTTGTTGCCTTACTCCCATGCTGGGACAACCTTTACACATGGAATGTTATTGACTATCCCGAGGAAGAAGACAGGAATTCTTGAAGATGTTCGTTCTAGTGGTTGGTTGGATGCCATGAAATCATCTTCACCTCCAGCCAGGAAGATAACAAAGGATGTTGGCCATGGGTTTGCATCATCTGATTCTGAAACTGCTGGTGCTTATTTTAGCTGGCTGCTAAAATACCCATCCGCACTTGCATCTTTTGATCAAATCATGAACTATGCAAAAGGGAAAAGAATTGCGCTGTTTATGGATTATGATGGAACTCTTTCACCAATTGTGGATAATCCTGACTGTGCTTTCATGTCCGACAATATGCGTGCTGCTGTTAAAAAGGTGGCAGAATATTTTCCAACAGCAATAATTAGTGGAAGAAGCCGTGATAAGGTATATCAATTTGTAGGACTAACAGAACTCTATTATGCTGGTAGTCATGGAATGGACATCATTGGGCCTGTTAGACAATCTGTATCTGATAATCACCCAAATTGCATTAGGTCTACAGACAAGCAGGGTAAGGAAGTAAATTTATTCCAACCTGCTGCTGAATTTCTGCCCATGATTAATGAGGTACTTAATTCTCTTGAAGAGTGTACGAAAGACATTAAAGGAGCTAAAGTTGAGAACAATAAATTTTGTGTATCTGTGCACTACCGGAATGTAGATGAAAAGTATTGGGATTTGGTGGGGCAACATGTTCATGATGTTCTGAAGGGTTATCCGCGTTTGCGCTTAACTCATGGGCGGAAGGTTTTAGAGATCCGACCTGTGATTAACTGGGATAAGGGAAAAGCTGTCACGTTTTTACTTGAGTCACTTGGGCTAAACAATTGTGATGATGTGCTTCCTATATATATTGGAGATGATCAGACTGACGAAGATGCATTTAAGGTTTTGAGAGAGGGAAATAAAGGTTATGGGATCTTGGTGTCTTCGGCACCAAAAGAAAGCAACGCAATTTACTCTCTGCGTGATCCGTCAGAGGTCATGGAATTTCTCAAGTCCCTTGTGTTGTGGAAATCAAGCACCTTAAAAAGCCTTATATAGTGTATAGAGGAGAGAATATACTCTGCTATACTATACTATGTCATAAAAATAGCTTTTTTCGATTTTGGTTTTCTCAGAAACATTCCAAGAGGTTTACTGGAGCAGATTTACGCACAGAAGAACCTCTTTTGGTAACAACAGCGTTGTCGCTACCCAGTTTTTTTGCTCGAAGCTCTTGTGGTAGCTGTAAATTCGTCAACTCATAATTATAAATATCTTAAAGAATTAAAGAATGAGCTGAGTTGTTTCGTTTTTTTTTTCCTTCTCTCATTACAAATGTATTGATATTTAATCATTGATGTTTCAGTTTTGATCACTATATCTAACCACTAAAACGGGAGTCACACATGCGAAATCATTCATTTGTTAAGTCATTTTGCATGTAGTTTGACTGTTTGAATAATATAATTTATGATAGCTTTTGATGAGATATCCGTGATAGCTAGCTCTTTTGCCCATTGAAAGAAAAAAGAAAAAAAAAGGTTACTAGCTTTTTATTGTGCACTGCTAAAAAAAAAAAGAAGCAAGGCACGGGATTTGGAGTCTTGTCTCTGTGCAAGTTCCCCACGTATAAAGGATCCAATGACTTGGTTGATGAGGAATTGTCTGATGCCGATTAGCCAATTGGGAAGGACTAATTGTATGCTGGAGGCCTAATTAGAATTGGAAACTCTAGAAAAAAAGAAAAGGCCCAATGAACATTACGGCTTTGGAACTGAGGAATAAGAGCTTTAATCAAATAGTCGATAGTGTTTTATTTTGAACTTTATGGTTTTAAAGACCAGGGCTGTCAACCAGTAAGTCATCTT

Coding sequences of Glyma12g00790

Limit To All Plant Sequences

>Glyma12g00790.1   sequence type=CDS   gene model=Glyma12g00790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACTTGAAGTCGAATCATACTCCTGTTCTCACTGATGCTGCACCTGTAACAAAGTCTAGACTGGGTGTGCATTCCAGTTTGTTGCCTTACTCCCATGCTGGGACAACCTTTACACATGGAATGTTATTGACTATCCCGAGGAAGAAGACAGGAATTCTTGAAGATGTTCGTTCTAGTGGTTGGTTGGATGCCATGAAATCATCTTCACCTCCAGCCAGGAAGATAACAAAGGATGTTGGCCATGGGTTTGCATCATCTGATTCTGAAACTGCTGGTGCTTATTTTAGCTGGCTGCTAAAATACCCATCCGCACTTGCATCTTTTGATCAAATCATGAACTATGCAAAAGGGAAAAGAATTGCGCTGTTTATGGATTATGATGGAACTCTTTCACCAATTGTGGATAATCCTGACTGTGCTTTCATGTCCGACAATATGCGTGCTGCTGTTAAAAAGGTGGCAGAATATTTTCCAACAGCAATAATTAGTGGAAGAAGCCGTGATAAGGTATATCAATTTGTAGGACTAACAGAACTCTATTATGCTGGTAGTCATGGAATGGACATCATTGGGCCTGTTAGACAATCTGTATCTGATAATCACCCAAATTGCATTAGGTCTACAGACAAGCAGGGTAAGGAAGTAAATTTATTCCAACCTGCTGCTGAATTTCTGCCCATGATTAATGAGGTACTTAATTCTCTTGAAGAGTGTACGAAAGACATTAAAGGAGCTAAAGTTGAGAACAATAAATTTTGTGTATCTGTGCACTACCGGAATGTAGATGAAAAGTATTGGGATTTGGTGGGGCAACATGTTCATGATGTTCTGAAGGGTTATCCGCGTTTGCGCTTAACTCATGGGCGGAAGGTTTTAGAGATCCGACCTGTGATTAACTGGGATAAGGGAAAAGCTGTCACGTTTTTACTTGAGTCACTTGGGCTAAACAATTGTGATGATGTGCTTCCTATATATATTGGAGATGATCAGACTGACGAAGATGCATTTAAGGTTTTGAGAGAGGGAAATAAAGGTTATGGGATCTTGGTGTCTTCGGCACCAAAAGAAAGCAACGCAATTTACTCTCTGCGTGATCCGTCAGAGGTCATGGAATTTCTCAAGTCCCTTGTGTTGTGGAAATCAAGCACCTTAAAAAGCCTTATATAG

>Glyma12g00790.2   sequence type=CDS   gene model=Glyma12g00790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACTTGAAGTCGAATCATACTCCTGTTCTCACTGATGCTGCACCTGTAACAAAGTCTAGACTGGGTGTGCATTCCAGTTTGTTGCCTTACTCCCATGCTGGGACAACCTTTACACATGGAATGTTATTGACTATCCCGAGGAAGAAGACAGGAATTCTTGAAGATGTTCGTTCTAGTGGTTGGTTGGATGCCATGAAATCATCTTCACCTCCAGCCAGGAAGATAACAAAGGATGTTGGCCATGGGTTTGCATCATCTGATTCTGAAACTGCTGGTGCTTATTTTAGCTGGCTGCTAAAATACCCATCCGCACTTGCATCTTTTGATCAAATCATGAACTATGCAAAAGGGAAAAGAATTGCGCTGTTTATGGATTATGATGGAACTCTTTCACCAATTGTGGATAATCCTGACTGTGCTTTCATGTCCGACAATATGCGTGCTGCTGTTAAAAAGGTGGCAGAATATTTTCCAACAGCAATAATTAGTGGAAGAAGCCGTGATAAGGTATATCAATTTGTAGGACTAACAGAACTCTATTATGCTGGTAGTCATGGAATGGACATCATTGGGCCTGTTAGACAATCTGTATCTGATAATCACCCAAATTGCATTAGGTCTACAGACAAGCAGGGTAAGGAAGTAAATTTATTCCAACCTGCTGCTGAATTTCTGCCCATGATTAATGAGGTACTTAATTCTCTTGAAGAGTGTACGAAAGACATTAAAGGAGCTAAAGTTGAGAACAATAAATTTTGTGTATCTGTGCACTACCGGAATGTAGATGAAAAGTATTGGGATTTGGTGGGGCAACATGTTCATGATGTTCTGAAGGGTTATCCGCGTTTGCGCTTAACTCATGGGCGGAAGGTTTTAGAGATCCGACCTGTGATTAACTGGGATAAGGGAAAAGCTGTCACGTTTTTACTTGAGTCACTTGGGCTAAACAATTGTGATGATGTGCTTCCTATATATATTGGAGATGATCAGACTGACGAAGATGCATTTAAGGTTTTGAGAGAGGGAAATAAAGGTTATGGGATCTTGGTGTCTTCGGCACCAAAAGAAAGCAACGCAATTTACTCTCTGCGTGATCCGTCAGAGGTCATGGAATTTCTCAAGTCCCTTGTGTTGTGGAAATCAAGCACCTTAAAAAGCCTTATATAG

Predicted protein sequences of Glyma12g00790

Limit To All Plant Sequences

>Glyma12g00790.1   sequence type=predicted peptide   gene model=Glyma12g00790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDLKSNHTPVLTDAAPVTKSRLGVHSSLLPYSHAGTTFTHGMLLTIPRKKTGILEDVRSSGWLDAMKSSSPPARKITKDVGHGFASSDSETAGAYFSWLLKYPSALASFDQIMNYAKGKRIALFMDYDGTLSPIVDNPDCAFMSDNMRAAVKKVAEYFPTAIISGRSRDKVYQFVGLTELYYAGSHGMDIIGPVRQSVSDNHPNCIRSTDKQGKEVNLFQPAAEFLPMINEVLNSLEECTKDIKGAKVENNKFCVSVHYRNVDEKYWDLVGQHVHDVLKGYPRLRLTHGRKVLEIRPVINWDKGKAVTFLLESLGLNNCDDVLPIYIGDDQTDEDAFKVLREGNKGYGILVSSAPKESNAIYSLRDPSEVMEFLKSLVLWKSSTLKSLI*

>Glyma12g00790.2   sequence type=predicted peptide   gene model=Glyma12g00790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDLKSNHTPVLTDAAPVTKSRLGVHSSLLPYSHAGTTFTHGMLLTIPRKKTGILEDVRSSGWLDAMKSSSPPARKITKDVGHGFASSDSETAGAYFSWLLKYPSALASFDQIMNYAKGKRIALFMDYDGTLSPIVDNPDCAFMSDNMRAAVKKVAEYFPTAIISGRSRDKVYQFVGLTELYYAGSHGMDIIGPVRQSVSDNHPNCIRSTDKQGKEVNLFQPAAEFLPMINEVLNSLEECTKDIKGAKVENNKFCVSVHYRNVDEKYWDLVGQHVHDVLKGYPRLRLTHGRKVLEIRPVINWDKGKAVTFLLESLGLNNCDDVLPIYIGDDQTDEDAFKVLREGNKGYGILVSSAPKESNAIYSLRDPSEVMEFLKSLVLWKSSTLKSLI*

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