SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G62660 | AT | Annotation by Michelle Graham. TAIR10: Glycosyl hydrolases family 32 protein | chr1:23199949-23203515 FORWARD LENGTH=648 | SoyBase | E_val: 0 | ISS |
| GO:0005975 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process | SoyBase | N/A | ISS |
| GO:0006598 | GO-bp | Annotation by Michelle Graham. GO Biological Process: polyamine catabolic process | SoyBase | N/A | ISS |
| GO:0006816 | GO-bp | Annotation by Michelle Graham. GO Biological Process: calcium ion transport | SoyBase | N/A | ISS |
| GO:0006826 | GO-bp | Annotation by Michelle Graham. GO Biological Process: iron ion transport | SoyBase | N/A | ISS |
| GO:0007030 | GO-bp | Annotation by Michelle Graham. GO Biological Process: Golgi organization | SoyBase | N/A | ISS |
| GO:0009611 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to wounding | SoyBase | N/A | ISS |
| GO:0009617 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to bacterium | SoyBase | N/A | ISS |
| GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
| GO:0009698 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phenylpropanoid metabolic process | SoyBase | N/A | ISS |
| GO:0009805 | GO-bp | Annotation by Michelle Graham. GO Biological Process: coumarin biosynthetic process | SoyBase | N/A | ISS |
| GO:0010106 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular response to iron ion starvation | SoyBase | N/A | ISS |
| GO:0010167 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to nitrate | SoyBase | N/A | ISS |
| GO:0015706 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nitrate transport | SoyBase | N/A | ISS |
| GO:0016132 | GO-bp | Annotation by Michelle Graham. GO Biological Process: brassinosteroid biosynthetic process | SoyBase | N/A | ISS |
| GO:0042398 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular modified amino acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0071370 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular response to gibberellin stimulus | SoyBase | N/A | ISS |
| GO:0000325 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plant-type vacuole | SoyBase | N/A | ISS |
| GO:0005773 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuole | SoyBase | N/A | ISS |
| GO:0004553 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds | SoyBase | N/A | ISS |
| GO:0004564 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: beta-fructofuranosidase activity | SoyBase | N/A | ISS |
| GO:0004575 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sucrose alpha-glucosidase activity | SoyBase | N/A | ISS |
| KOG0228 | KOG | Beta-fructofuranosidase (invertase) | JGI | ISS | |
| PF00251 | PFAM | Glycosyl hydrolases family 32 N-terminal domain | JGI | ISS | |
| PF08244 | PFAM | Glycosyl hydrolases family 32 C terminal | JGI | ISS | |
| PF11837 | PFAM | Domain of unknown function (DUF3357) | JGI | ISS | |
| UniRef100_Q05JI1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Beta-fructofuranosidase n=1 Tax=Citrus sinensis RepID=Q05JI1_CITSI | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233D03D | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233D03D related cluster n=1 Tax=unknown RepID=UPI000233D03D | SoyBase | E_val: 0 | ISS |
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Glyma12g00780 not represented in the dataset |
Glyma12g00780 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma09g36580 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g005100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g00780.1 sequence type=CDS gene model=Glyma12g00780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAACCCTGATCTTGAGCATGCTCCGCAAATTCCCTTGCTGAATCCTCCAACAGGGGAAAGTGGAAGGAGAACGCAAAAGGGTACCCTTGTTTTCATTGTCCTGATGTCATTGTTTGCACTTATTATCGTAAACCTTCAGAGCCATGAGCCCAGCTTAGAAAACAATATCACATTAATACCTAAAGCTAGAGGGGTTGCTGAGGGTGTATCAGCCAAGTCAAACCAATATCTGTCACACAAAGCTTCATATAACTGGACAAATGCAATGTTATCTTGGCAAAGAACAGCTTTCCATTTTCAACCTCAAAGGAACTGGATGAACGATCCTAACGGTCCATTGTTTTACATGGGGTGGTACCATGTATTTTACCAATACAATCCGGATTCAGCCGTGTGGGGCAACATAACATGGGGCCACGCTGTATCCAGAGACTTGATTCACTGGCTCTACCTTCCCATTGCCTTGTTTCCAGATAAGTGGTTTGACGTCAACGGTGTATGGTCAGGTTCAGCAACCCTTTTGCCAGATGGCAAAATCCTAATGCTCTACACGGGTAGCACCGATCAAAACGTGCAAGTCCAAAATCTTGCCTACCCCGCCAACCTATCTGATCCCCTCCTCCTTGATTGGGTCAAATATGCTGATAACCCTGTCTTGGCCCCTCCACCAGGCATTGGGCCAAAGGATTTTCGTGACCCAACCACTGCATGGTTTGGGCCAGATGAAAAGTGGAGGATCACCATTGGCTCAAAGCTCAACGGGACAGGTCTTTCATTGGTTTATAAAACCCAAGATTTCATCCACTACGAGCAAAATGATCACTATTTGCACCAAGTCCCGGGAACGGGTATGTGGGAGTGCGTGGACTTTTACCCGGTTTCAGTAAACGGGCCTAACGATGTGAAACATGTGTTGAAGGCTAGTTTGGATGACACCAAGGTGGATCATTATGCAATTGGGACATACTTCATTGAAAATGATACATGGGTGCCCGATAACCCGCATGAGGATGTGGGTATCGGGTTCAAATTGGACTATGGCAGATACTATGCGTCAAAGACATTCTATGACCAACACAAAAACAGAAGGATCCTGTGGGGTTGGATTAATGAATCAGATAGTGAAACCGCTGACTTGAAAAAGGGTTGGGCATCTCTCCAGACTATTCCAAGAACAGTAGTGTTTGACAAGAAGACTAGAACTAATTTGGTTCACTGGCCAGTGGAAGAAGTAGAAAGCTTAAGACTTGGCAGTTCCGAATTTGAAGGAGTTGTGGTTAAACCTGGCTCAGTTGTGCCACTGGACATAGGCCCAGCCACACAGTTGGACGTATTTGCTGAATTTGAAATCGAATTTTTAGCATCCAAAGGGAGTGGCAAGGACAATATAGGATGTGGAAATGGAGCTGTTGATAGAAGTGCTTTGGGACCATTCGGTATTCTGGCTATTGCAGATGACCATCTTTCTGAACTAACACCAATTTATTTCCATCTTTCTAGTACTACTAAAGATGGCAGTTCAACCACTTCCTTCTGTGTTGATGAAACTAGGTCATCAAAGGCTCCTGATGTTTCAAAGCTCGTTTTTGGAAGCAAAGTTCCTGTTCTCAGTGATGAAAAATTATCAATGAGGGTATTGGTGGACCATTCAATCATTGAGAGCTTTGCTCAGGGAGGGAGAACAGTGATCTCATCTAGAGTTTATCCAACAGAAGCAATATATGGAGCTGCAAGATTGTTTCTGTTCAACAACGCAACGGACATAAACATCAAGGTCTCGCTCAAGATTTGGCAATTGAACTCAGCTTTCATACGCCCCTTTCCCTTTGACCAGAAGTTGTGA
>Glyma12g00780.1 sequence type=predicted peptide gene model=Glyma12g00780 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNPDLEHAPQIPLLNPPTGESGRRTQKGTLVFIVLMSLFALIIVNLQSHEPSLENNITLIPKARGVAEGVSAKSNQYLSHKASYNWTNAMLSWQRTAFHFQPQRNWMNDPNGPLFYMGWYHVFYQYNPDSAVWGNITWGHAVSRDLIHWLYLPIALFPDKWFDVNGVWSGSATLLPDGKILMLYTGSTDQNVQVQNLAYPANLSDPLLLDWVKYADNPVLAPPPGIGPKDFRDPTTAWFGPDEKWRITIGSKLNGTGLSLVYKTQDFIHYEQNDHYLHQVPGTGMWECVDFYPVSVNGPNDVKHVLKASLDDTKVDHYAIGTYFIENDTWVPDNPHEDVGIGFKLDYGRYYASKTFYDQHKNRRILWGWINESDSETADLKKGWASLQTIPRTVVFDKKTRTNLVHWPVEEVESLRLGSSEFEGVVVKPGSVVPLDIGPATQLDVFAEFEIEFLASKGSGKDNIGCGNGAVDRSALGPFGILAIADDHLSELTPIYFHLSSTTKDGSSTTSFCVDETRSSKAPDVSKLVFGSKVPVLSDEKLSMRVLVDHSIIESFAQGGRTVISSRVYPTEAIYGAARLFLFNNATDINIKVSLKIWQLNSAFIRPFPFDQKL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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