SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G70710 | AT | Annotation by Michelle Graham. TAIR10: glycosyl hydrolase 9B1 | chr1:26659356-26662962 REVERSE LENGTH=492 | SoyBase | E_val: 0 | ISS |
| GO:0005975 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process | SoyBase | N/A | ISS |
| GO:0009664 | GO-bp | Annotation by Michelle Graham. GO Biological Process: plant-type cell wall organization | SoyBase | N/A | ISS |
| GO:0010583 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cyclopentenone | SoyBase | N/A | ISS |
| GO:0042545 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell wall modification | SoyBase | N/A | ISS |
| GO:0042547 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell wall modification involved in multidimensional cell growth | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0004553 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds | SoyBase | N/A | ISS |
| GO:0008810 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: cellulase activity | SoyBase | N/A | ISS |
| PTHR22298 | Panther | ENDO-1,4-BETA-GLUCANASE | JGI | ISS | |
| PF00759 | PFAM | Glycosyl hydrolase family 9 | JGI | ISS | |
| UniRef100_B9R9R3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Endo-1,4-beta-glucanase, putative n=1 Tax=Ricinus communis RepID=B9R9R3_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233D03B | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233D03B related cluster n=1 Tax=unknown RepID=UPI000233D03B | SoyBase | E_val: 0 | ISS |
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Glyma12g00750 not represented in the dataset |
Glyma12g00750 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma09g36620 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g004800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g00750.1 sequence type=CDS gene model=Glyma12g00750 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTTTCCCGCAAAGGTTGCTGTTTATATTGGCAGCAGGTACCATATTGAGTGTAACGGGTTTGGAGCATAACTATGGAGAAGCTTTGTCAAAGAGCATATTGTTCTTTGAAGGACAGAGGTCTGGGAAATTGCCACCAACACAGAGAATGACTTGGAGGAAGGATTCTGCGCTTCAAGATGTCTATATAGTCCCTGCTGATACTACTGTCTTACCTTTCCTTCGTAATAAAGTTGACTTGGTTGGTGGTTACTACGATGCTGGCGACAACGTGAAATTCAACTTTCCAATGGCATTTTCAACAACCATGCTTGCCTGGAGTGTGATAGAGTTCGGAAAATTCATGGGTCCAGACCTTAAACATGCGTTAGACGCTATTCGTTGGGCCACAGAGTATTTCCTCAAAGCCACAAGCATCCCCGGTTTTGTGTTTGCACAAGTCGGTGACCCATATGCTGATCACAATTGCTGGGAGAGACCTGAAGACATGGACACCCCCAGAACAGCCTTTGCCGTTAGCAGAGACTTCCCTGGCTCTGAAGTTTCAGCAGAGATAGCAGCTGCACTTGCAGCCTCCTCAATTGTATATAGGAAGTATCATTTAGGTTACTCTACAAGACTTCTCCAAAGGGCTATAAAGGTTTTTGATTTTGCAGATAAGTACAGAGGATCATACAATGACAGCCTCGGACCGTGGGTATGCCCATTCTATTGTGATTTTAGTGGCTACCAGGACGAATTGGTGTGGGGAGCAGCATGGTTGTTCAAGGCTACTAAACGCCCTTACTACGCAGATTACATTGACAAAAACGTTCATAATCTGAAAAACTTTGCTGAATTTGGATGGGACTCAAAGGATGCTGGCATCAACGTGCTCGTGTCTAAGCTTCTAATTAATAGTAGCTCTAATTCTAAGCCTTTCATCCTCAACAATGCTGACAAGTTTGTCTGTTCTGTGCTACCTGAATCACCTTCAGTATTGGTCTCATACTCTTCAGGTGGGCTTCTATTCAAGCCTGGAGGGAGTAACTTGCAGCATGCAACAGCAATCTCATTTCTGTTTCTGGTTTATGCTGGCTATTTGAAACAGACAAATAAAGAGATTGACTGTGGGGGTAAAGTTTTTGCTTCTCCAAAGCGACTCAAACAAATAGCAAGAGGCCAGGTGGATTACATACTAGGAAGCAATCCAGCGAATATGTCATACATGGTAGGATACGGAGCAAAATATCCTGAAAGAATACATCATCGTGCGTCGTCATTGCCATCCGTGGATGAGCACCGCGGCCACATTGGTTGCAAAGGAGGATCATTTTATTTTGACAACCAAAATGCAAACCCCAACTTGCTTGTCGGAGCTGTTGTGGGAGGACCAGATATGAAGGATTCATACGCAGATTCTCGAGCAGATTTTGTACACTCTGAACCTACAACATACATCAATGCACCCCTTGTGGGTGTTTTGGCATACTTCAATTCACATCCATCCTAG
>Glyma12g00750.1 sequence type=predicted peptide gene model=Glyma12g00750 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGFPQRLLFILAAGTILSVTGLEHNYGEALSKSILFFEGQRSGKLPPTQRMTWRKDSALQDVYIVPADTTVLPFLRNKVDLVGGYYDAGDNVKFNFPMAFSTTMLAWSVIEFGKFMGPDLKHALDAIRWATEYFLKATSIPGFVFAQVGDPYADHNCWERPEDMDTPRTAFAVSRDFPGSEVSAEIAAALAASSIVYRKYHLGYSTRLLQRAIKVFDFADKYRGSYNDSLGPWVCPFYCDFSGYQDELVWGAAWLFKATKRPYYADYIDKNVHNLKNFAEFGWDSKDAGINVLVSKLLINSSSNSKPFILNNADKFVCSVLPESPSVLVSYSSGGLLFKPGGSNLQHATAISFLFLVYAGYLKQTNKEIDCGGKVFASPKRLKQIARGQVDYILGSNPANMSYMVGYGAKYPERIHHRASSLPSVDEHRGHIGCKGGSFYFDNQNANPNLLVGAVVGGPDMKDSYADSRADFVHSEPTTYINAPLVGVLAYFNSHPS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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