SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G62360 | AT | Annotation by Michelle Graham. TAIR10: Plant invertase/pectin methylesterase inhibitor superfamily protein | chr5:25040699-25041310 FORWARD LENGTH=203 | SoyBase | E_val: 9.00E-59 | ISS |
| GO:0005575 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cellular component | SoyBase | N/A | ISS |
| GO:0004857 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: enzyme inhibitor activity | SoyBase | N/A | ISS |
| GO:0030599 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: pectinesterase activity | SoyBase | N/A | ISS |
| GO:0046910 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: pectinesterase inhibitor activity | SoyBase | N/A | ISS |
| PTHR22931 | Panther | PHOSPHOENOLPYRUVATE DIKINASE-RELATED | JGI | ISS | |
| PTHR22931:SF14 | Panther | INVERTASE/PECTIN METHYLESTERASE INHIBITOR FAMILY P | JGI | ISS | |
| PF04043 | PFAM | Plant invertase/pectin methylesterase inhibitor | JGI | ISS | |
| UniRef100_B9R9R0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: 21 kDa protein, putative n=1 Tax=Ricinus communis RepID=B9R9R0_RICCO | SoyBase | E_val: 4.00E-64 | ISS |
| UniRef100_I1LNS0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LNS0_SOYBN | SoyBase | E_val: 1.00E-144 | ISS |
|
Glyma12g00730 not represented in the dataset |
Glyma12g00730 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma09g36640 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g004600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g00730.2 sequence type=CDS gene model=Glyma12g00730 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATAATATACAGAGTATTAATAGTAAAATTGCACAAGGTAGAAAATTTGAGTCCTATATATAGGTCACCTTCCATCCTATTTCTTTCCTCACCCAAACCAACCAACCACCAAATTAATCCATATATAGAGAGAGTTAGGAAAACAATGGAAGCCATTTCTCCTAAGCATCTTATGACATCCCTTGTAATAATTATAGCTTCTAGTTTGACCGCACACTGTGGCTGTGCCAAGAGAGGGGGTGAAAGACCATACAAAGAAGCCAACACACTGTTCATAAGAACATCTTGCAGCTCCACAACATATCCAAGACTCTGCTACAGCTCCTTAGTGAAGCATGCAGACTTGATCCAAACAAATCGTGTGGTTCTGACAGGCGCAGCCCTGAATGTGACTCTTGCGTCAGTGAAATCGACATCGGCAATGATGTCAACGCTGGCAAAGAAGCAGGGGCTGAAGCCAAGAGAGGTTGCAGCGATGCAGGACTGTGTGGAGCAGCTGAGTGACACTGTGGATGAACTGAGAAGGTCTATTGCAGAGATGAGTGATCTAAGAGCTTCCAATTTTGAGATGATAATGAGTGATGTACAAACATGGGTGAGTGCCGCTTTGACGGATGAAACCACCTGCAACGATGGCTTCCAAGAGATCACTGCTGCCACTGATATTAAAAGCACCGTCAGAAGACTCGTTATTCAGGTAGCTCAATTGACTAGCAATGCCTTGGCTTTGATAAATAAGCTAGCCAATTCTTAA
>Glyma12g00730.2 sequence type=predicted peptide gene model=Glyma12g00730 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MIIYRVLIVKLHKVENLSPIYRSPSILFLSSPKPTNHQINPYIERVRKTMEAISPKHLMTSLVIIIASSLTAHCGCAKRGGERPYKEANTLFIRTSCSSTTYPRLCYSSLVKHADLIQTNRVVLTGAALNVTLASVKSTSAMMSTLAKKQGLKPREVAAMQDCVEQLSDTVDELRRSIAEMSDLRASNFEMIMSDVQTWVSAALTDETTCNDGFQEITAATDIKSTVRRLVIQVAQLTSNALALINKLANS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
