SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G61670 | AT | Annotation by Michelle Graham. TAIR10: Encodes a close homolog of the Cauliflower OR (Orange) protein. The function of OR is to induce the differentiation of proplastids or other noncolored plastids into chromoplasts for carotenoid accumulation. Both proteins contain a Cysteine-rich zinc finger domain that is highly specific to DnaJ-like molecular chaperons. | chr5:24783629-24785201 FORWARD LENGTH=307 | SoyBase | E_val: 6.00E-175 | ISS |
| GO:0009661 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chromoplast organization | SoyBase | N/A | ISS |
| GO:0016120 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carotene biosynthetic process | SoyBase | N/A | ISS |
| GO:0009536 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plastid | SoyBase | N/A | ISS |
| UniRef100_I1LNQ9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1LNQ9_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_I6N0L8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Orange protein n=1 Tax=Nicotiana tabacum RepID=I6N0L8_TOBAC | SoyBase | E_val: 4.00E-174 | ISS |
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Glyma12g00600 not represented in the dataset |
Glyma12g00600 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma09g36770 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g003500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g00600.4 sequence type=transcript gene model=Glyma12g00600 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AATTCCATTTATCCACTTTTATTTTTTAATTGATTTGGATTTAGTGAAGGTTGATGAGGACGGTGTGCACTCCACTAAAAATACCATGTATTCCAAATATCCGATTAAATATTTGTTTCTGGTCTGCAACCTAAAATTCTATGTGAGTGAATTGGGAGGATGCTGTGTCTGGGTCGATTCGGCGGGGTCTCTCACTACCCAATCAAATCCGGTTGGAGTCGGAGGGACTACACCAATAACAGGCCCAGATGGTGTTTGATGGCCGCCCAGGAATCCGACTCTTCTTTTGCACCCTCTCTTGACTCCGACAAAACCGCCTCTGCTGGATTCTGCATCATTGAAGGCCCAGAAACGGTACAGGATTTTGCCAAGATGGAACTTCAAGAAATTCAGGACAACATTCGAAGTCGGAGGAACAAAATCTTCTTACACATGGAAGAGGTTCGTAGGCTTAGGATACAGCAAAGAATTAAAAGTGCCGAACTTGGAATTTTAAACGAAGAGCAAGAGAATGAACTCCCTAACTTCCCATCATTCATTCCTTTCTTGCCTCCTTTGACTTCAGCAAATCTCAAGCAATATTATGCAACCTGTTTTTCTCTTATTGCCGGGATAATTCTTTTTGGTGGTCTCCTTGCACCTAGTTTGGAGCTTAAGCTTGGACTAGGGGGCACATCTTATGCAGATTTTATTGAAAGTTTACATCTTCCTATGCAACTGAGTCAGGTTGATCCCATAGTGGCATCATTCTCTGGAGGAGCAGTTGGAGTAATCTCGGCATTAATGGTGGTTGAGATAAACAATGTAAAACAGCAGGAGCAGAAAAGATGCAAATACTGTCTTGGTACTGGATATCTTGCATGTGCTCGCTGTTCAAGCACAGGAGCACTTGTTCTGATTGAACCAGTATCCACAGTCAAAGGTGGAGATAAGCCTCTTTCACCACCAAAAACTGAGAGATGTTCAAATTGCTCTGGATCTGGCAAGGTTATGTGTCCAACATGTCTTTGCACTGGAATGGCCATGGCAAGCGAACATGATCCACGAATTGATCCATTTGATTAGAGGTTCAATAATTTGGAAGTGGTATTCGTTTCCGTGGCGGAGAAATGGATTTTCTGTAAATATGTATAAACACTTACATGAAAAAGAAAATTGTTAAAAATATATAGACAGTTTCCCTTTATTTTTGAGGATTGAAAGTGGTGCAGATATAAAGTTCACCAAGTGGTTGGAGAAGGGAGAAGGAATTTTGGGTTCGAATCTCTCGTGACATTTCTAACTAAACTAACATTTTACGCTGGAAAAAGTGTTTACTTTTTGAAAATGATTATAGAACATTTTTCTAGCAAAAGGAACACAAGCTTCACTTGTTTCCTA >Glyma12g00600.5 sequence type=transcript gene model=Glyma12g00600 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AATTCCATTTATCCACTTTTATTTTTTAATTGATTTGGATTTAGTGAAGGTTGATGAGGACGGTGTGCACTCCACTAAAAATACCATGTATTCCAAATATCCGATTAAATATTTGTTTCTGGTCTGCAACCTAAAATTCTATGTGAGTGAATTGGGAGGATGCTGTGTCTGGGTCGATTCGGCGGGGTCTCTCACTACCCAATCAAATCCGGTTGGAGTCGGAGGGACTACACCAATAACAGGCCCAGATGGTGTTTGATGGCCGCCCAGGAATCCGACTCTTCTTTTGCACCCTCTCTTGACTCCGACAAAACCGCCTCTGCTGGATTCTGCATCATTGAAGGCCCAGAAACGGTACAGGATTTTGCCAAGATGGAACTTCAAGAAATTCAGGACAACATTCGAAGTCGGAGGAACAAAATCTTCTTACACATGGAAGAGGTTCGTAGGCTTAGGATACAGCAAAGAATTAAAAGTGCCGAACTTGGAATTTTAAACGAAGAGCAAGAGAATGAACTCCCTAACTTCCCATCATTCATTCCTTTCTTGCCTCCTTTGACTTCAGCAAATCTCAAGCAATATTATGCAACCTGTTTTTCTCTTATTGCCGGGATAATTCTTTTTGGTGGTCTCCTTGCACCTAGTTTGGAGCTTAAGCTTGGACTAGGGGGCACATCTTATGCAGATTTTATTGAAAGTTTACATCTTCCTATGCAACTGAGTCAGGTTGATCCCATAGTGGCATCATTCTCTGGAGGAGCAGTTGGAGTAATCTCGGCATTAATGGTGGTTGAGATAAACAATGTAAAACAGCAGGAGCAGAAAAGATGCAAATACTGTCTTGGTACTGGATATCTTGCATGTGCTCGCTGTTCAAGCACAGGAGCACTTGTTCTGATTGAACCAGTATCCACAGTCAAAGGTGGAGATAAGCCTCTTTCACCACCAAAAACTGAGAGATGTTCAAATTGCTCTGGATCTGGCAAGGTTATGTGTCCAACATGTCTTTGCACTGGAATGGCCATGGCAAGCGAACATGATCCACGAATTGATCCATTTGATTAGAGGTTCAGTAATTATAGTTATCCCGAGCAGTTATAAGAAAAATCTGGTATTTTTTGTTGAAGTGGTTTTTATTTCCGAGCAGGTTCAATAATTTGGAAGTGGTATTCGTTTCCGTGGCGGAGAAATGGATTTTCTGTAAATATGTATAAACACTTACATGAAAAAGAAAATTGTTAAAAATATATAGACAGTTTCCCTTTATTTTTGAGGATTGAAAGTGGTGCAGATATAAAGTTCACCAAGTGGTTGGAGAAGGGAGAAGGAATTTTGGGTTCGAATCTCTCGTGACATTTCTAACTAAACTAACATTTTACGCTGGAAAAAGTGTTTACTTTTTGAAAATGATTATAGAACATTTTTCTAGCAAAAGGAACACAAGCTTCACTTGTTTCCTA
>Glyma12g00600.2 sequence type=CDS gene model=Glyma12g00600 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAACTTCAAGAAATTCAGGACAACATTCGAAGTCGGAGGAACAAAATCTTCTTACACATGGAAGAGGTTCGTAGGCTTAGGATACAGCAAAGAATTAAAAGTGCCGAACTTGGAATTTTAAACGAAGAGCAAGAGAATGAACTCCCTAACTTCCCATCATTCATTCCTTTCTTGCCTCCTTTGACTTCAGCAAATCTCAAGCAATATTATGCAACCTGTTTTTCTCTTATTGCCGGGATAATTCTTTTTGGTGGTCTCCTTGCACCTAGTTTGGAGCTTAAGCTTGGACTAGGGGGCACATCTTATGCAGATTTTATTGAAAGTTTACATCTTCCTATGCAACTGAGTCAGGTTGATCCCATAGTGGCATCATTCTCTGGAGGAGCAGTTGGAGTAATCTCGGCATTAATGGTGGTTGAGATAAACAATGTAAAACAGCAGGAGCAGAAAAGATGCAAATACTGTCTTGGTACTGGATATCTTGCATGTGCTCGCTGTTCAAGCACAGGAGCACTTGTTCTGATTGAACCAGTATCCACAGTCAAAGGTGGAGATAAGCCTCTTTCACCACCAAAAACTGAGAGATGTTCAAATTGCTCTGGATCTGGCAAGGTTATGTGTCCAACATGTCTTTGCACTGGAATGGCCATGGCAAGCGAACATGATCCACGAATTGATCCATTTGATTAG >Glyma12g00600.4 sequence type=CDS gene model=Glyma12g00600 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTGTGTCTGGGTCGATTCGGCGGGGTCTCTCACTACCCAATCAAATCCGGTTGGAGTCGGAGGGACTACACCAATAACAGGCCCAGATGGTGTTTGATGGCCGCCCAGGAATCCGACTCTTCTTTTGCACCCTCTCTTGACTCCGACAAAACCGCCTCTGCTGGATTCTGCATCATTGAAGGCCCAGAAACGGTACAGGATTTTGCCAAGATGGAACTTCAAGAAATTCAGGACAACATTCGAAGTCGGAGGAACAAAATCTTCTTACACATGGAAGAGGTTCGTAGGCTTAGGATACAGCAAAGAATTAAAAGTGCCGAACTTGGAATTTTAAACGAAGAGCAAGAGAATGAACTCCCTAACTTCCCATCATTCATTCCTTTCTTGCCTCCTTTGACTTCAGCAAATCTCAAGCAATATTATGCAACCTGTTTTTCTCTTATTGCCGGGATAATTCTTTTTGGTGGTCTCCTTGCACCTAGTTTGGAGCTTAAGCTTGGACTAGGGGGCACATCTTATGCAGATTTTATTGAAAGTTTACATCTTCCTATGCAACTGAGTCAGGTTGATCCCATAGTGGCATCATTCTCTGGAGGAGCAGTTGGAGTAATCTCGGCATTAATGGTGGTTGAGATAAACAATGTAAAACAGCAGGAGCAGAAAAGATGCAAATACTGTCTTGGTACTGGATATCTTGCATGTGCTCGCTGTTCAAGCACAGGAGCACTTGTTCTGATTGAACCAGTATCCACAGTCAAAGGTGGAGATAAGCCTCTTTCACCACCAAAAACTGAGAGATGTTCAAATTGCTCTGGATCTGGCAAGGTTATGTGTCCAACATGTCTTTGCACTGGAATGGCCATGGCAAGCGAACATGATCCACGAATTGATCCATTTGATTAG >Glyma12g00600.5 sequence type=CDS gene model=Glyma12g00600 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTGTGTCTGGGTCGATTCGGCGGGGTCTCTCACTACCCAATCAAATCCGGTTGGAGTCGGAGGGACTACACCAATAACAGGCCCAGATGGTGTTTGATGGCCGCCCAGGAATCCGACTCTTCTTTTGCACCCTCTCTTGACTCCGACAAAACCGCCTCTGCTGGATTCTGCATCATTGAAGGCCCAGAAACGGTACAGGATTTTGCCAAGATGGAACTTCAAGAAATTCAGGACAACATTCGAAGTCGGAGGAACAAAATCTTCTTACACATGGAAGAGGTTCGTAGGCTTAGGATACAGCAAAGAATTAAAAGTGCCGAACTTGGAATTTTAAACGAAGAGCAAGAGAATGAACTCCCTAACTTCCCATCATTCATTCCTTTCTTGCCTCCTTTGACTTCAGCAAATCTCAAGCAATATTATGCAACCTGTTTTTCTCTTATTGCCGGGATAATTCTTTTTGGTGGTCTCCTTGCACCTAGTTTGGAGCTTAAGCTTGGACTAGGGGGCACATCTTATGCAGATTTTATTGAAAGTTTACATCTTCCTATGCAACTGAGTCAGGTTGATCCCATAGTGGCATCATTCTCTGGAGGAGCAGTTGGAGTAATCTCGGCATTAATGGTGGTTGAGATAAACAATGTAAAACAGCAGGAGCAGAAAAGATGCAAATACTGTCTTGGTACTGGATATCTTGCATGTGCTCGCTGTTCAAGCACAGGAGCACTTGTTCTGATTGAACCAGTATCCACAGTCAAAGGTGGAGATAAGCCTCTTTCACCACCAAAAACTGAGAGATGTTCAAATTGCTCTGGATCTGGCAAGGTTATGTGTCCAACATGTCTTTGCACTGGAATGGCCATGGCAAGCGAACATGATCCACGAATTGATCCATTTGATTAG
>Glyma12g00600.2 sequence type=predicted peptide gene model=Glyma12g00600 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MELQEIQDNIRSRRNKIFLHMEEVRRLRIQQRIKSAELGILNEEQENELPNFPSFIPFLPPLTSANLKQYYATCFSLIAGIILFGGLLAPSLELKLGLGGTSYADFIESLHLPMQLSQVDPIVASFSGGAVGVISALMVVEINNVKQQEQKRCKYCLGTGYLACARCSSTGALVLIEPVSTVKGGDKPLSPPKTERCSNCSGSGKVMCPTCLCTGMAMASEHDPRIDPFD* >Glyma12g00600.4 sequence type=predicted peptide gene model=Glyma12g00600 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLCLGRFGGVSHYPIKSGWSRRDYTNNRPRWCLMAAQESDSSFAPSLDSDKTASAGFCIIEGPETVQDFAKMELQEIQDNIRSRRNKIFLHMEEVRRLRIQQRIKSAELGILNEEQENELPNFPSFIPFLPPLTSANLKQYYATCFSLIAGIILFGGLLAPSLELKLGLGGTSYADFIESLHLPMQLSQVDPIVASFSGGAVGVISALMVVEINNVKQQEQKRCKYCLGTGYLACARCSSTGALVLIEPVSTVKGGDKPLSPPKTERCSNCSGSGKVMCPTCLCTGMAMASEHDPRIDPFD* >Glyma12g00600.5 sequence type=predicted peptide gene model=Glyma12g00600 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLCLGRFGGVSHYPIKSGWSRRDYTNNRPRWCLMAAQESDSSFAPSLDSDKTASAGFCIIEGPETVQDFAKMELQEIQDNIRSRRNKIFLHMEEVRRLRIQQRIKSAELGILNEEQENELPNFPSFIPFLPPLTSANLKQYYATCFSLIAGIILFGGLLAPSLELKLGLGGTSYADFIESLHLPMQLSQVDPIVASFSGGAVGVISALMVVEINNVKQQEQKRCKYCLGTGYLACARCSSTGALVLIEPVSTVKGGDKPLSPPKTERCSNCSGSGKVMCPTCLCTGMAMASEHDPRIDPFD*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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