SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G33430 | AT | Annotation by Michelle Graham. TAIR10: Galactosyltransferase family protein | chr1:12124438-12126052 REVERSE LENGTH=395 | SoyBase | E_val: 0 | ISS |
| GO:0006486 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein glycosylation | SoyBase | N/A | ISS |
| GO:0010584 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pollen exine formation | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0008378 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: galactosyltransferase activity | SoyBase | N/A | ISS |
| GO:0016757 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups | SoyBase | N/A | ISS |
| GO:0016758 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring hexosyl groups | SoyBase | N/A | ISS |
| KOG2288 | KOG | Galactosyltransferases | JGI | ISS | |
| PTHR11214 | Panther | BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE | JGI | ISS | |
| PTHR11214:SF5 | Panther | gb def: b0024.3.p [caenorhabditis elegans] | JGI | ISS | |
| PF01762 | PFAM | Galactosyltransferase | JGI | ISS | |
| UniRef100_G7JRD7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Avr9 elicitor response protein n=1 Tax=Medicago truncatula RepID=G7JRD7_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LNQ3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LNQ3_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma12g00530 not represented in the dataset |
Glyma12g00530 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma09g36830 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.12g003100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g00530.3 sequence type=transcript gene model=Glyma12g00530 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TGTTAATTGCTGAATTTGTTGCATCATGAAAACCACATGACCAAACTACCATTATTCTGGCAATCAAAAATGCCATATAACTATAATGGCATTTATAGAGAGCTATAGATAGGTACATTGTCAGACATCTCTGCCAATGACGCTTATTATTCTAGTATTTTAAGAATTTTCAGTCAAAAGTGACATGATCCTGCAATCATCAAACACATCTTTTTAAGGCTCAATTTAAAAGTTCAAGAGGTGTCATCAGGCGTTGAGATAGAAAAGAAAACATGAGGGGAAAGGCAGGTTCAGGAAAGACCATTTTGTTTGTATGCATTGCATGCTTTCTTGCGGGAACCCTCTTCAATGGCCAGATGTGGACACGCCCCTCCAACCATGAAAATGAAAATACACTACTACGTCTACCACCCAGACCTGATTGTGATCATAAGCGAAAACTGATTGAAGGCAAACCTGGTGATGTAATGGAGGAAGTCGTAAAGACTCATCAAGCTATCAAGTCACTGGATAAGGCAGTTTCGACACTGGAAATGGAACTGACAGCAAGCCAAACTGGTGGGCGGCAACGGTCTTCTAACCACAGTGTACAGAAGGCTTTTGTGGTGATTGGTATTAACACAGCATTTAGCAGCAAAAGGCGAAGAGACTCGATACGCCAAACATGGTTATCTAAACGAAATCAGCTGAAGGAATTAGAGAAAGAGAAGGGCATTGTTGTAAGGTTCGTGATCGGGCACAGTACAACACCGGGTGGCATTCTTGATAAAGCAATTGATGCAGAAGAGGCAGAACACAAGGACTTCCTCAGGTTAGACCATGTTGAGGGCTACCATGAGCTATCCACCAAGACTCGCCTCTACTTTTCCACTATTACTTCTATGTGGGATGCTGATTTCTATGTCAAGGTCGACGATGATATCCATTTAAATCTAGGTATGTTAGTGAGTACACTTGCTAAGTACCGATCAAGACCCAGGATTTATATTGGTTGCATGAAATCTGGTCCTGTTCTATATCAAAAAGGAGTAAAGTATCATGAGGCTGAGAACTGGAAGTTTGGAGAGGAAGGAAACAAGTATTTTAGGCATGCCACTGGCCAAATATATGCCATCTCCAAGGATCTCGCTACTTATATATCCATCAATTGGCCCATATTGCACAGATACGCAAATGAAGACGTATCTTTAGGTTCATGGTTATTGGGCCTAGAAGTTGAACATGTCGATGAACGCTCTATGTGTTGCGGGACCCCTCCAGATTGTGATTGGAAGGCAAGGACGGGAAATGTGTGCGTGGCATCCTTCGACTGGTCATGCAGTGGTATCTGTAAGTCGGTAGAGAGAATGAGAGATATACACAAAACTTGTGGGGAGGGTGACGGAGCTGTTTGGAACGTTGACCTTTAATTCTCAAATTGAGACATAGAAAATCTTATAGCTTTACTACTTTTGCATTAAGAGGAATTGAATCCATTTTCCTTATATTTTAATGAAATTTGAGGGACAATATCTATACTAAGTGAATAACTTGTTTCATCAAAAGAAAA
>Glyma12g00530.2 sequence type=CDS gene model=Glyma12g00530 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGGGGAAAGGCAGGTTCAGGAAAGACCATTTTGTTTGTATGCATTGCATGCTTTCTTGCGGGAACCCTCTTCAATGGCCAGATGTGGACACGCCCCTCCAACCATGAAAATGAAAATACACTACTACGTCTACCACCCAGACCTGATTGTGATCATAAGCGAAAACTGATTGAAGGCAAACCTGGTGATGTAATGGAGGAAGTCGTAAAGACTCATCAAGCTATCAAGTCACTGGATAAGGCAGTTTCGACACTGGAAATGGAACTGACAGCAAGCCAAACTGGTGGGCGGCAACGGTCTTCTAACCACAGTGTACAGAAGGCTTTTGTGGTGATTGGTATTAACACAGCATTTAGCAGCAAAAGGCGAAGAGACTCGATACGCCAAACATGGTTATCTAAACGAAATCAGCTGAAGGAATTAGAGAAAGAGAAGGGCATTGTTGTAAGGTTCGTGATCGGGCACAGTACAACACCGGGTGGCATTCTTGATAAAGCAATTGATGCAGAAGAGGCAGAACACAAGGACTTCCTCAGGTTAGACCATGTTGAGGGCTACCATGAGCTATCCACCAAGACTCGCCTCTACTTTTCCACTATTACTTCTATGTGGGATGCTGATTTCTATGTCAAGGTCGACGATGATATCCATTTAAATCTAGGTATGTTAGTGAGTACACTTGCTAAGTACCGATCAAGACCCAGGATTTATATTGGTTGCATGAAATCTGGTCCTGTTCTATATCAAAAAGGAGTAAAGTATCATGAGGCTGAGAACTGGAAGTTTGGAGAGGAAGGAAACAAGTATTTTAGGCATGCCACTGGCCAAATATATGCCATCTCCAAGGATCTCGCTACTTATATATCCATCAATTGGCCCATATTGCACAGATACGCAAATGAAGACGTATCTTTAGGTTCATGGTTATTGGGCCTAGAAGTTGAACATGTCGATGAACGCTCTATGTGTTGCGGGACCCCTCCAGATTGTGATTGGAAGGCAAGGACGGGAAATGTGTGCGTGGCATCCTTCGACTGGTCATGCAGTGGTATCTGTAAGTCGGTAGAGAGAATGAGAGATATACACAAAACTTGTGGGGAGGGTGACGGAGCTGTTTGGAACGTTGACCTTTAA >Glyma12g00530.3 sequence type=CDS gene model=Glyma12g00530 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGGGGAAAGGCAGGTTCAGGAAAGACCATTTTGTTTGTATGCATTGCATGCTTTCTTGCGGGAACCCTCTTCAATGGCCAGATGTGGACACGCCCCTCCAACCATGAAAATGAAAATACACTACTACGTCTACCACCCAGACCTGATTGTGATCATAAGCGAAAACTGATTGAAGGCAAACCTGGTGATGTAATGGAGGAAGTCGTAAAGACTCATCAAGCTATCAAGTCACTGGATAAGGCAGTTTCGACACTGGAAATGGAACTGACAGCAAGCCAAACTGGTGGGCGGCAACGGTCTTCTAACCACAGTGTACAGAAGGCTTTTGTGGTGATTGGTATTAACACAGCATTTAGCAGCAAAAGGCGAAGAGACTCGATACGCCAAACATGGTTATCTAAACGAAATCAGCTGAAGGAATTAGAGAAAGAGAAGGGCATTGTTGTAAGGTTCGTGATCGGGCACAGTACAACACCGGGTGGCATTCTTGATAAAGCAATTGATGCAGAAGAGGCAGAACACAAGGACTTCCTCAGGTTAGACCATGTTGAGGGCTACCATGAGCTATCCACCAAGACTCGCCTCTACTTTTCCACTATTACTTCTATGTGGGATGCTGATTTCTATGTCAAGGTCGACGATGATATCCATTTAAATCTAGGTATGTTAGTGAGTACACTTGCTAAGTACCGATCAAGACCCAGGATTTATATTGGTTGCATGAAATCTGGTCCTGTTCTATATCAAAAAGGAGTAAAGTATCATGAGGCTGAGAACTGGAAGTTTGGAGAGGAAGGAAACAAGTATTTTAGGCATGCCACTGGCCAAATATATGCCATCTCCAAGGATCTCGCTACTTATATATCCATCAATTGGCCCATATTGCACAGATACGCAAATGAAGACGTATCTTTAGGTTCATGGTTATTGGGCCTAGAAGTTGAACATGTCGATGAACGCTCTATGTGTTGCGGGACCCCTCCAGATTGTGATTGGAAGGCAAGGACGGGAAATGTGTGCGTGGCATCCTTCGACTGGTCATGCAGTGGTATCTGTAAGTCGGTAGAGAGAATGAGAGATATACACAAAACTTGTGGGGAGGGTGACGGAGCTGTTTGGAACGTTGACCTTTAA
>Glyma12g00530.2 sequence type=predicted peptide gene model=Glyma12g00530 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRGKAGSGKTILFVCIACFLAGTLFNGQMWTRPSNHENENTLLRLPPRPDCDHKRKLIEGKPGDVMEEVVKTHQAIKSLDKAVSTLEMELTASQTGGRQRSSNHSVQKAFVVIGINTAFSSKRRRDSIRQTWLSKRNQLKELEKEKGIVVRFVIGHSTTPGGILDKAIDAEEAEHKDFLRLDHVEGYHELSTKTRLYFSTITSMWDADFYVKVDDDIHLNLGMLVSTLAKYRSRPRIYIGCMKSGPVLYQKGVKYHEAENWKFGEEGNKYFRHATGQIYAISKDLATYISINWPILHRYANEDVSLGSWLLGLEVEHVDERSMCCGTPPDCDWKARTGNVCVASFDWSCSGICKSVERMRDIHKTCGEGDGAVWNVDL* >Glyma12g00530.3 sequence type=predicted peptide gene model=Glyma12g00530 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRGKAGSGKTILFVCIACFLAGTLFNGQMWTRPSNHENENTLLRLPPRPDCDHKRKLIEGKPGDVMEEVVKTHQAIKSLDKAVSTLEMELTASQTGGRQRSSNHSVQKAFVVIGINTAFSSKRRRDSIRQTWLSKRNQLKELEKEKGIVVRFVIGHSTTPGGILDKAIDAEEAEHKDFLRLDHVEGYHELSTKTRLYFSTITSMWDADFYVKVDDDIHLNLGMLVSTLAKYRSRPRIYIGCMKSGPVLYQKGVKYHEAENWKFGEEGNKYFRHATGQIYAISKDLATYISINWPILHRYANEDVSLGSWLLGLEVEHVDERSMCCGTPPDCDWKARTGNVCVASFDWSCSGICKSVERMRDIHKTCGEGDGAVWNVDL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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