Glyma12g00370 - SoyBase

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Report for Sequence Feature Glyma12g00370

Feature Type:	gene_model
Chromosome:	Gm12
Start:	122593
stop:	124014
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g00370

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G22600	AT	Annotation by Michelle Graham. TAIR10: Late embryogenesis abundant protein (LEA) family protein \| chr1:7987308-7989187 REVERSE LENGTH=385	SoyBase	E_val: 4.00E-76	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG2886	KOG	Uncharacterized conserved protein	JGI		ISS
PTHR23241	Panther	LATE EMBRYOGENESIS ABUNDANT (PLANTS) LEA-RELATED	JGI		ISS
PTHR23241:SF1	Panther	LATE EMBRYOGENESIS ABUNDANT (LEA)-RELATED	JGI		ISS
UniRef100_C6TE25	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=C6TE25_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9SKA2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Late embryogenesis abundant protein (LEA) family protein n=1 Tax=Arabidopsis thaliana RepID=Q9SKA2_ARATH	SoyBase	E_val: 2.00E-73	ISS

Expression Patterns of Glyma12g00370

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g00370

Paralog	Evidence	Comments
Glyma08g26100	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g00370 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g001600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g00370

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma12g00370

Limit To All Plant Sequences

>Glyma12g00370.1   sequence type=CDS   gene model=Glyma12g00370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAATTGAATCCTAAAAACAGCAACGAGCAAACAAAAGAAGCAATGATGATGAATGTCATAGGGCTGAGTCTGAGTCTGGTGTTAACTTCACTGGCAGCAGCGAGCACCATCGTCAAAGAAGGGCACAGAGTTGTCGTGGTTGAATACGACCAAGGTGGCCATCAGAACACCAAAATCTCAATATCACCAGAACAACCTACGCATGCTAATCTTAAAGATCCCATTTGCGACGCCTATGGAAAATGCAAGCACAAAATCGTGGATGCAATGGAGAAGTCTCAAGAGGTCATCCATGAGAAGAAGGACGAGATTGCCGCCAACAAGGAGGCAGCACGCCAAGTTGCTGGTAAAACCAAAGAGAGAGTGTATGATAAAGCCCGTCATGTCCACGAATACGCCCAAAACACTGTAGAAACAGCCAAGAACCATATTGCCTGTAACGTGTCAAACGCCAAAGATGCATTCAAGCGTCTAATAGCAGGATCTTTGGAGAGGCAGAGCCTTAATTCTTTGATGGGGGTGGCTAACATGTTGGGGTTTTCCACGGCTTATGGGATGTGTGTGTGGGTTACGTTCATCTCCAGCTATGTGCAGTCCAGGGCTATGGCAAGGCAACAATTTGCAGTGGTGCAGAGTAAAATATATCCTGTTTATTTCAGGGCCATGTCTTATAGCATCGGGGTCGCTTTATTCGCCCATGTCTTGGCCCATAGAAACACCTTGCTCTCCAACAAGTCTGACTTATTGCAAGCATATAATCTTCTGGCCTCCCTTGTCACACTTTTCTTCAATTCTCTTTACTTGGAGCCTCGGGCCACCAAGTTGATGTTCGAGAGGATAAAGATAGAAAAAGAGGAAGGAAGAGGCAGATCAGAAGATGTGAGTAGCAGAACTAAAGAGCCAGCTTCCACGACCGCAGACCAGGATGCAGTCAGAACAAGGATAATCAAGCTCAATGACAAGCTCAAGAAACTCAATTCCTACTCCTCATTCCTCAATATCCTCAATCTCATGTCTCTTACTTGGCATCTCGTTTATTTGGCTCAACGACTTCCCCATATTTGCTAA

Predicted protein sequences of Glyma12g00370

Limit To All Plant Sequences

>Glyma12g00370.1   sequence type=predicted peptide   gene model=Glyma12g00370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MELNPKNSNEQTKEAMMMNVIGLSLSLVLTSLAAASTIVKEGHRVVVVEYDQGGHQNTKISISPEQPTHANLKDPICDAYGKCKHKIVDAMEKSQEVIHEKKDEIAANKEAARQVAGKTKERVYDKARHVHEYAQNTVETAKNHIACNVSNAKDAFKRLIAGSLERQSLNSLMGVANMLGFSTAYGMCVWVTFISSYVQSRAMARQQFAVVQSKIYPVYFRAMSYSIGVALFAHVLAHRNTLLSNKSDLLQAYNLLASLVTLFFNSLYLEPRATKLMFERIKIEKEEGRGRSEDVSSRTKEPASTTADQDAVRTRIIKLNDKLKKLNSYSSFLNILNLMSLTWHLVYLAQRLPHIC*

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