Glyma12g00360 - SoyBase

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Report for Sequence Feature Glyma12g00360

Feature Type:	gene_model
Chromosome:	Gm12
Start:	113565
stop:	117401
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma12g00360

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G22610	AT	Annotation by Michelle Graham. TAIR10: C2 calcium/lipid-binding plant phosphoribosyltransferase family protein \| chr1:7994478-7997567 FORWARD LENGTH=1029	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG1028	KOG	Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis	JGI		ISS
PTHR10024	Panther	SYNAPTOTAGMIN	JGI		ISS
PTHR10024:SF97	Panther	C2 DOMAIN-CONTAINING PROTEIN	JGI		ISS
PF00168	PFAM	C2 domain	JGI		ISS
PF08372	PFAM	Plant phosphoribosyltransferase C-terminal	JGI		ISS
UniRef100_D7KLT5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: C2 domain-containing protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7KLT5_ARALL	SoyBase	E_val: 0	ISS
UniRef100_I1LNN7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LNN7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma12g00360

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma12g00360

Paralog	Evidence	Comments
Glyma08g26090	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma12g00360 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.12g001500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma12g00360

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma12g00360

Limit To All Plant Sequences

>Glyma12g00360.1   sequence type=CDS   gene model=Glyma12g00360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGAACAGACTGGTGGTAGAAGTTGTGGAGGCTAGCGACCTGATGCCCAAAGATGGGGAAGGGTCAGCTAGCCCCTTTGTAGAGGTAAAGTTGGATGAGCAGCAGCACAGCACTGAAACAAAGCACAAAGACCTGAATCCTTGTTGGAATGAAAAGTTTGTGTTCAACATCAATAACCCCAGAGATCTTGCGCACAAGACAATTGAAGTGGTTGTATACAATCACAACGATGGGAACCACAATAACTTCCTCGGAAGGGTGAGACTTTCAGGCGCCTCTATCCCTCTATCGGAGTCCCAGGCTCGTGTGGAACGCTACCCACTTGAGAAACGTGGCCTCTTCTCAAACATCAGGGGAGATATTGCTCTCAGATGTTATGCGGTGCATGATCATGCTGATGCTGAGGAACACCATCACCCCCAAGTAGACACTCCTGCTGCTGAGGAGGCGTATCAGGGCACTCCCTTTCAAGAAATAAACCCCAACATCAACATGGTGCTAGATGAGGAAAGCGTGGTTGGTGACGGGGACAAGAATAAGAAGAAGAAGATGAAAAAGAAAGAGAAGGAAGTCAGGACTTTTCACTCTATTCCAGCAGCAGCGAAGGCATACCCGGCGCCGGCAATGGAAACAACGCAAAGGAGGGTTGATTTTGCAAAAGCTGGGCCACCCAATGTAATGTTAATGCAGCAGATCCCTAGGCAAAATCCTGAGTATTCGTTGGTGGAGACTAGTCCACCACTGGCGGCTCGTTTGCGCTATAGAGGAGGAGGAGGAGGGGACAAGATATCCACCACCTACGACTTAGTGGAACAGATGAATTACTTGTACGTGAATGTCGTCAAGGCTAGGGATCTACCTGTCATGGATATAACTGGAAGCCTTGACCCTTATGTGGAAGTCAAGCTTGGTAACTACAAGGGCCTGACCAAGCACTTGGACAAGAACCAGAACCCTGTCTGGAAGCAAATCTTTGCCTTCTCCAAGGACAGGTTGCAGTCCAATTTGCTTGAAGTCACCGTCAAGGATAAGGACATTGGCAAGGATGATTTTGTGGGGAGAGTTATGTTTGATCTCACCGAGGTTCCTCTTCGGGTACCCCCTGACAGCCCCTTGGCTCCTCAATGGTACAGACTGGAGGACAAGAAGGGCCAAAAAATTCATAATAACGGGGAAATCATGCTTGCGGTTTGGATGGGAACTCAAGCGGATGAGTCCTTCCCGGAGGCCTGGCACTCTGATGCTCACAACGTTAGTCACTCCAACCTTTCAAACACCCGCTCAAAGGTCTACTTCTCCCCCAAGCTTTACTATCTTAGAGTTCAAGTAATCGAGGCTCAGGATCTCGTTCCTTCCGAAAAAGGAAGGCCCCCTGACTCCCTTGTTAGAGTGCAGCTAGGGAATCAGATGAGATTCACCCGGCCTTCTCAAATTAGAGGCACCAACCCTGTTTGGAATGACGAGCTTATGTTTGTGGCCGCCGAGCCATTTGAGGATTTTATCATTGTCACTGTTGAGGACAAAGTTGGTCCTAATGTTGAAATCTTAGGAAGGGAGATCATATCCGTCAGAAGTGTTCTTCCCAGACACGAGTCCAGCAAGAAGCTCCCCGATTCTCGTTGGTTCAATTTACACAGGCCCAATGCGGTTGGCGAGGAAGAAACACAGAAAAAGAAGGAGAAATTCTCAAGCAAGATTCACCTCCGAGTGTGTCTTGAGGCCGGCTACCACGTGCTTGATGAGTCCACGCATTTCAGCAGTGATCTTCAGCCATCCTCCAAACATTTGAGGAAGAAAAACATTGGAATTCTCGAACTTGGGATCCTGAGTGCCCGCAATTTGCTGCCCATGAAGGCCAGGGAAGGGAGGACTACTGATGCATACTGTGTGGCCAAGTATGGCAACAAATGGGTTCGAACCAGAACTCTGCTTGATACTCTCTCCCCTCGATGGAATGAGCAATATACCTGGGAGGTTCATGATCCGTGCACTGTCATCACAGTTGGGGTTTTTGACAACCACCACATCAATGGGAGCAGTGATGCCAGAGATCAGAGAATTGGAAAGGTGAGAATCAGGTTGTCAACTCTGGAGACTGATAGGGTGTATACTCATTTTTATCCTCTGCTGGTTCTCCAACCCAATGGCCTGAAGAAGAATGGAGAGCTTCACTTGGCAGTGAGATTCACTTGCACCGCATGGGTTAACATGGTAGCCCAGTATGGTAGGCCTTTACTGCCCAAAATGCATTATGTCCAACCAATACCCGTCAGGCACATAGATTGGCTCCGCCACCAGGCCATGCAGATTGTGGCAGCTCGCCTATCTAGAGCCGAGCCACCCCTTAGGCGTGAAGCAGTTGAGTACATGCTCGACGTTGACTACCACATGTGGAGTCTAAGGAGAAGCAAAGCCAACTTTCAACGCATAATGTCACTCCTCAAAGGAGTTACAGCTATTTGCAAATGGTTTGATGACATCTGTACCTGGAGAAACCCAATCACAACCTGCCTTGTTCACGTCTTGTTCTTGATACTGGTTTGCTACCCGGAATTGATACTGCCCACCATTTTTCTTTACTTGTTTGTAATTGGTATTTGGAATTACCGGTTCAGGCCAAGGCATCCACCCCACATGGATGCTAGGCTTTCACAAGCAGAAGCTGCTCACCCAGATGAACTGGACGAGGAATTTGACACTTTTCCAACAACAAAACCTTCAGATATTGTGAGAATGAGGTATGACAGATTGCGGAGTGTGGCAGGTAGAGTGCAGACTGTGGTTGGAGATTTGGCTACTCAAGGAGAAAGAGCTCAAGCCATACTTGGTTGGAGAGACTCCAGAGCTACATCCATCTTCATCATCTTCTCACTCATTTGGGCTGTTTTCATTTACATTACTCCCTTCCAAGTCGTTGCAATTCTAGTTGGCCTCTATATGCTACGTCATCCTCGGTTTAGGAGCAAGATGCCATCGGTACCAGTTAATTTCTTCAAGAGATTGCCTTCCAAATCAGATATGCTGATATGA

Predicted protein sequences of Glyma12g00360

Limit To All Plant Sequences

>Glyma12g00360.1   sequence type=predicted peptide   gene model=Glyma12g00360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMNRLVVEVVEASDLMPKDGEGSASPFVEVKLDEQQHSTETKHKDLNPCWNEKFVFNINNPRDLAHKTIEVVVYNHNDGNHNNFLGRVRLSGASIPLSESQARVERYPLEKRGLFSNIRGDIALRCYAVHDHADAEEHHHPQVDTPAAEEAYQGTPFQEINPNINMVLDEESVVGDGDKNKKKKMKKKEKEVRTFHSIPAAAKAYPAPAMETTQRRVDFAKAGPPNVMLMQQIPRQNPEYSLVETSPPLAARLRYRGGGGGDKISTTYDLVEQMNYLYVNVVKARDLPVMDITGSLDPYVEVKLGNYKGLTKHLDKNQNPVWKQIFAFSKDRLQSNLLEVTVKDKDIGKDDFVGRVMFDLTEVPLRVPPDSPLAPQWYRLEDKKGQKIHNNGEIMLAVWMGTQADESFPEAWHSDAHNVSHSNLSNTRSKVYFSPKLYYLRVQVIEAQDLVPSEKGRPPDSLVRVQLGNQMRFTRPSQIRGTNPVWNDELMFVAAEPFEDFIIVTVEDKVGPNVEILGREIISVRSVLPRHESSKKLPDSRWFNLHRPNAVGEEETQKKKEKFSSKIHLRVCLEAGYHVLDESTHFSSDLQPSSKHLRKKNIGILELGILSARNLLPMKAREGRTTDAYCVAKYGNKWVRTRTLLDTLSPRWNEQYTWEVHDPCTVITVGVFDNHHINGSSDARDQRIGKVRIRLSTLETDRVYTHFYPLLVLQPNGLKKNGELHLAVRFTCTAWVNMVAQYGRPLLPKMHYVQPIPVRHIDWLRHQAMQIVAARLSRAEPPLRREAVEYMLDVDYHMWSLRRSKANFQRIMSLLKGVTAICKWFDDICTWRNPITTCLVHVLFLILVCYPELILPTIFLYLFVIGIWNYRFRPRHPPHMDARLSQAEAAHPDELDEEFDTFPTTKPSDIVRMRYDRLRSVAGRVQTVVGDLATQGERAQAILGWRDSRATSIFIIFSLIWAVFIYITPFQVVAILVGLYMLRHPRFRSKMPSVPVNFFKRLPSKSDMLI*

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