Report for Sequence Feature Glyma12g00300
Feature Type: gene_model
Chromosome: Gm12
Start: 72935
stop: 74036
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma12g00300
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G09350 AT
Annotation by Michelle Graham. TAIR10: Chaperone DnaJ-domain superfamily protein | chr4:5931317-5932152 REVERSE LENGTH=249
SoyBase E_val: 2.00E-99 ISS
GO:0006457 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein folding
SoyBase N/A ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0031072 GO-mf
Annotation by Michelle Graham. GO Molecular Function: heat shock protein binding
SoyBase N/A ISS
PTHR24077 Panther
FAMILY NOT NAMED
JGI ISS
PTHR24077:SF97 Panther
JGI ISS
PF00226 PFAM
DnaJ domain
JGI ISS
UniRef100_D7LX90 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: DNAJ heat shock N-terminal domain-containing protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7LX90_ARALL
SoyBase E_val: 2.00E-97 ISS
UniRef100_UPI000189D9AD UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000189D9AD related cluster n=1 Tax=unknown RepID=UPI000189D9AD
SoyBase E_val: 0 ISS
Expression Patterns of Glyma12g00300
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma12g00300
Paralog Evidence Comments
Glyma08g26020 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma12g00300 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.12g001000 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma12g00300
Coding sequences of Glyma12g00300
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma12g00300.1 sequence type=CDS gene model=Glyma12g00300 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGTGGAAGAGACACAAATGAAAGGTATTGTGGTATTACCGCTCTGTTCTCCCATGGCAGCTCCTCTGCAGGTTGTATTATACGGAAATCAGCCTCACCCAGAAGCCAAGTTTTTGTTTTTGAGGAGTACTGGTCGTTGCACTAATTTTCAGGTTCACTCCTCTCGCAGAGCACCCCCTGGTGTTGACACCAGAATCCATTGGGAAAACGAAGATGAAGGTTGGATCGGAGGTACCAATACCAAACACCAACAAACCCACAAACCCAATAACATGTTACAGGCTGATGACTTTCCAGATCTCCTCTCTGCTTCTTTAGGTTCTCATTACGAATTCTTAGGCGTATCACCAGATGCGGATTTAGAAGAAATTAAAGTTGCTTATCGGAAACTGTCAAAGGAGTATCATCCCGACACAACTTCCCTCCCTCTCAAAACTGCCTCAGAAAAGTTCATGAAATTAAGAGAGGTTTACAACGTTCTTAGCAATGAAGAGAGTCGGAAATTCTATGACTGGACCCTTGCTCAAGAGGTTGCAAGCCGCCACGCAGAGAAGATGAAAATGAAATTAGAGGATCCTCGCGAGCAACAACTCAAGAACTGGGAACCTGTTCCAGACATGGTTGACCGCCTTGGTGGAAGGAATATGAAGCTTAGTGATCAGGCAGTTTCTGCCATCACTATTGATCTTTTCATCATTGTTTTTGCCATATGTTGTATCATATATGTAATTTTCTTTAAAGAACCCTATTACTACTAA
Predicted protein sequences of Glyma12g00300
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma12g00300.1 sequence type=predicted peptide gene model=Glyma12g00300 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MVEETQMKGIVVLPLCSPMAAPLQVVLYGNQPHPEAKFLFLRSTGRCTNFQVHSSRRAPPGVDTRIHWENEDEGWIGGTNTKHQQTHKPNNMLQADDFPDLLSASLGSHYEFLGVSPDADLEEIKVAYRKLSKEYHPDTTSLPLKTASEKFMKLREVYNVLSNEESRKFYDWTLAQEVASRHAEKMKMKLEDPREQQLKNWEPVPDMVDRLGGRNMKLSDQAVSAITIDLFIIVFAICCIIYVIFFKEPYYY*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
