SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G20720 | AT | Annotation by Michelle Graham. TAIR10: RAD3-like DNA-binding helicase protein | chr1:7185658-7192794 REVERSE LENGTH=1175 | SoyBase | E_val: 5.00E-83 | ISS |
| GO:0006139 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nucleobase-containing compound metabolic process | SoyBase | N/A | ISS |
| GO:0006261 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA-dependent DNA replication | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0004003 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP-dependent DNA helicase activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0008026 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP-dependent helicase activity | SoyBase | N/A | ISS |
| GO:0016817 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on acid anhydrides | SoyBase | N/A | ISS |
| GO:0016818 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | SoyBase | N/A | ISS |
| PTHR11472 | Panther | DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER | JGI | ISS | |
| PTHR11472:SF6 | Panther | gb def: helicase, rad3b [halobacterium sp. nrc-1] | JGI | ISS | |
| PF06733 | PFAM | DEAD 2 | JGI | ISS | |
| UniRef100_B9R8Q0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Brca1 interacting protein helicase 1 brip1, putative n=1 Tax=Ricinus communis RepID=B9R8Q0_RICCO | SoyBase | E_val: 4.00E-82 | ISS |
| UniRef100_I1MBY2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1MBY2_SOYBN | SoyBase | E_val: 9.00E-94 | ISS |
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Glyma12g00200 not represented in the dataset |
Glyma12g00200 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma12g00200.1 sequence type=CDS gene model=Glyma12g00200 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATCTTTGCATCAAACCCTAATCCTAAAAAAGTGTACCTCATCGGAGGTTTGCAAGTGGAGTTTCCCTACCAACCATATGGATCTCAGTTTGCGTTTATGGCTAGAGTGATTTCCACCCTTAATCTAGCTCAGAAAGAAGGCCATTGTCACACGTTGCTTGAGTCTCCAAGCGGTACTGGTAAGTCCCTTTCGCTTCTTTGTTCCTCTCTCGCTTGGCAGCACCACTTAAATCTCAACATCACCATCTCAAGCCTGCGTCGGAGGCAACCATCGATCCTCTGGCTCTGGTGGTGGATTTTTTCAGAAATTCCCGACCATACGCAATTTGAGATCAACAACAAGAAGCAGAAGAAAAAGGAAGCACCAACCATATATTATGCCTCAAGGAGAACGCACTCACAAATTTCTCAAGTGGTTCGTGAATTGCGGAAAACTGCATACAGGGTGCCTATGGCTGTGTTGATCAGGCAACAGGGTGTCCAGAATTCAAGTGAGTGTATGCTTATTTGCTCATGCTTCCTATCTATTTTTCATATCACTTTTCCTGAAGTAAAAATGCTCATAAAGTCAAAGGTCATCCTTCCCTTCAGAAAGGAGGATGCAATGTGGTGCGTGACAGAAGATCTTGTAAAAGTTGGACAATTGGTAAAAGGTTGCTGTTATTATGGTGCTCGTTCTATGTCAAATGATGCTCAATTAGTATTTTGTCCATATAACTACATCAATAATCCAGTCATTCGGGCACCAATGGAAGTGGATATTAAAGTAGGTATAGTTATTCTTGACGAAGCTCACAATATGGAGGACATTACTTGTGATGCTGGCAGTGTGGATAATGAAGATGTTTTGGATAGTAATAGGATTATATATTGGGTTTGCAATGGCCTTACTAGTTGGATGGAACACAAGAAAAAAAAGCTAGAAAAATGTGATTTTCACCACCGT
>Glyma12g00200.1 sequence type=predicted peptide gene model=Glyma12g00200 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MIFASNPNPKKVYLIGGLQVEFPYQPYGSQFAFMARVISTLNLAQKEGHCHTLLESPSGTGKSLSLLCSSLAWQHHLNLNITISSLRRRQPSILWLWWWIFSEIPDHTQFEINNKKQKKKEAPTIYYASRRTHSQISQVVRELRKTAYRVPMAVLIRQQGVQNSSECMLICSCFLSIFHITFPEVKMLIKSKVILPFRKEDAMWCVTEDLVKVGQLVKGCCYYGARSMSNDAQLVFCPYNYINNPVIRAPMEVDIKVGIVILDEAHNMEDITCDAGSVDNEDVLDSNRIIYWVCNGLTSWMEHKKKKLEKCDFHHR
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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