Glyma11g38230 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma11g38230

Feature Type:	gene_model
Chromosome:	Gm11
Start:	39157711
stop:	39160917
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g38230

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G65140	AT	Annotation by Michelle Graham. TAIR10: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein \| chr5:26019878-26022077 REVERSE LENGTH=370	SoyBase	E_val: 0	ISS
GO:0005992	GO-bp	Annotation by Michelle Graham. GO Biological Process: trehalose biosynthetic process	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004805	GO-mf	Annotation by Michelle Graham. GO Molecular Function: trehalose-phosphatase activity	SoyBase	N/A	ISS
PTHR10788	Panther	TREHALOSE-6-PHOSPHATE SYNTHASE	JGI		ISS
PF02358	PFAM	Trehalose-phosphatase	JGI		ISS
UniRef100_B9T4H6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Trehalose-6-phosphate synthase, putative n=1 Tax=Ricinus communis RepID=B9T4H6_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1LNL8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LNL8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma11g38230

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g38230

Paralog	Evidence	Comments
Glyma18g02160	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g38230 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g239300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g38230

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma11g38230

Limit To All Plant Sequences

>Glyma11g38230.2   sequence type=transcript   gene model=Glyma11g38230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCTCACACATACAATACAACACAATACACTCTCCATTTCTCACTCCTTTTCTTCTCTTCACTCTTCATTTCCTCTCATTAATCTCTTTCTTTGATCCATATTCTGCCATAACAGCACACGATAACTAAACCACAACAACACTTGAAGTTAGTTACTTGTACTTTCTCTGAAACTTTGATTGTGTCAAAATGACGCAGCAGAATGTGGTAGTGTCTGATACTAAATCAGGAGTTTCCTTAACGGTTTTCTCAACAACACAAAAGCCACCGGCGGCGCCAGGAGGGTACATTTCCATTCCAAGGAGGAGGGTTTTGAAGAACCTTGAAATCAATGGAGGCCAAAGAATCAATGCATGGGTTGAGTCCATGAGAGCCTCCTCTCCAACCCATCATAAATCCACACCTTCTTTGTCTCAGGAGCATAACTCTTGGATTCTTCACCATCCATCAGCATTAGACATGTTTGACCAAATCATTGACGCGTCAAAGGGAAAACAAATTGTCATGTTTCTGGACTATGATGGCACGCTGTCTCCTATAGTTGACGACCCTGACCGTGCTTTCATGTCTGATTCGATGAGAAAAACAGTGAGGAAACTTGCTAGGTGTTTCCCTACTGCTATAGTGACCGGCAGATGCAAAGACAAGGTGTACAATTTTGTTCGCTTGGCAGAGCTATATTATGCAGGAAGCCATGGCATGGATATTAAAGGACCAACAAGAAGCTCCAAATACAACAAAGATAGCAAAGCTGAGGCAATCCTTTGTCAACCTGCCAGTGATTTTCTTCCCATGATAGATGAGGTGTATCAACAATTAGTTGAAAAGACAAAATCAACTCCTGGAGCTCTGGTTGAGAACAACAAGTTCTGTCTTTCTGTTCATTTTCGTTGTGTTGATGAAAAGAAATGGAGTGAACTGGCACGCCAAGTGAAATCAGTTTTAAAGGAGTACCCGAAACTTCGACTTACCCAAGGAAGAAAGGTGCTAGAGATTCGTCCCACTATTAAATGGGACAAAGGGAAAGCCTTGGAATTTTTATTAGAGTCACTTGGTGAGTTTTAGTCTAACACACTCTACGTTTTATTGCCACAATTGAACATGTGCTAACATGTTTCTTTTATAAAACATGTATTAATGATGGCTCAAAGTTACGTATATGTCTGTGGCTCTGTGCTATTCAGTTGTTGGATAACTCTGAAGTGCTTTGACTATTTACAAATAATTAAAGGAAACTCCCATACCCTGCGTGATTAATTTACTCATTTGAACATTGTTTTAACACATGACTACATGAGATTCTTAATTTTTATTAAAGTTTGTTTTAAATTGTCCACCATCATCTAAATTACAAATAATTTTCAATAGGTTTGGCCAACTGTAGTGATGTCTTTCCTGTTTATATTGGCGATGATCGATCCGATGAAGATGCTTTCAAGAAATTAAGAGACAGAGGACAAGGTTTTGGCATTCTTGTCTCCAAATTTCCGAAAGACACAAGCGCATCTTACTCTTTGCAAGAACCCAATGAGGTGATGAACTTTCTTCAACGCTTGGTGGAGTGGAAACATGTGTCCCTGCGAGCACGTTCCTGAGTGTAAATGAGAAAGATGAAATGACATGTACATCCCTACCCTGCCATGAAAAAGAAGTTCAGCTTGGGTAGAATATAGGATGTTTTGTATTTTTTGTTCAGTCAGAACAAAAGTGTATGGAAATAGAAAGACAAAAGTGTCTTTCTTAGTTTGAAAGACGTCCACATTCATGTAATTAGCCAAGTATTACTCAGTACATGGGAAAAAAGTTTATGTAGCCTTCAGATGCAAGTCTGAATGGATTAAAATTTCGCTTCCTTGTTACATGGATCAAACTATGATTAAGTAAGTATGGTTTCTCAATCGTGATTTTGTTGTTTGTCTCACTCTTACCATGCTACCTTCGAAAAACTTATTTGTTTGTCCTCTAGCTCCTCT

Coding sequences of Glyma11g38230

Limit To All Plant Sequences

>Glyma11g38230.1   sequence type=CDS   gene model=Glyma11g38230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACGCAGCAGAATGTGGTAGTGTCTGATACTAAATCAGGAGTTTCCTTAACGGTTTTCTCAACAACACAAAAGCCACCGGCGGCGCCAGGAGGGTACATTTCCATTCCAAGGAGGAGGGTTTTGAAGAACCTTGAAATCAATGGAGGCCAAAGAATCAATGCATGGGTTGAGTCCATGAGAGCCTCCTCTCCAACCCATCATAAATCCACACCTTCTTTGTCTCAGGAGCATAACTCTTGGATTCTTCACCATCCATCAGCATTAGACATGTTTGACCAAATCATTGACGCGTCAAAGGGAAAACAAATTGTCATGTTTCTGGACTATGATGGCACGCTGTCTCCTATAGTTGACGACCCTGACCGTGCTTTCATGTCTGATTCGATGAGAAAAACAGTGAGGAAACTTGCTAGGTGTTTCCCTACTGCTATAGTGACCGGCAGATGCAAAGACAAGGTGTACAATTTTGTTCGCTTGGCAGAGCTATATTATGCAGGAAGCCATGGCATGGATATTAAAGGACCAACAAGAAGCTCCAAATACAACAAAGATAGCAAAGCTGAGGCAATCCTTTGTCAACCTGCCAGTGATTTTCTTCCCATGATAGATGAGGTGTATCAACAATTAGTTGAAAAGACAAAATCAACTCCTGGAGCTCTGGTTGAGAACAACAAGTTCTGTCTTTCTGTTCATTTTCGTTGTGTTGATGAAAAGAAATGGAGTGAACTGGCACGCCAAGTGAAATCAGTTTTAAAGGAGTACCCGAAACTTCGACTTACCCAAGGAAGAAAGGTGCTAGAGATTCGTCCCACTATTAAATGGGACAAAGGGAAAGCCTTGGAATTTTTATTAGAGTCACTTGGTTTGGCCAACTGTAGTGATGTCTTTCCTGTTTATATTGGCGATGATCGATCCGATGAAGATGCTTTCAAGAAATTAAGAGACAGAGGACAAGGTTTTGGCATTCTTGTCTCCAAATTTCCGAAAGACACAAGCGCATCTTACTCTTTGCAAGAACCCAATGAGGTGATGAACTTTCTTCAACGCTTGGTGGAGTGGAAACATGTGTCCCTGCGAGCACGTTCCTGA

>Glyma11g38230.2   sequence type=CDS   gene model=Glyma11g38230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACGCAGCAGAATGTGGTAGTGTCTGATACTAAATCAGGAGTTTCCTTAACGGTTTTCTCAACAACACAAAAGCCACCGGCGGCGCCAGGAGGGTACATTTCCATTCCAAGGAGGAGGGTTTTGAAGAACCTTGAAATCAATGGAGGCCAAAGAATCAATGCATGGGTTGAGTCCATGAGAGCCTCCTCTCCAACCCATCATAAATCCACACCTTCTTTGTCTCAGGAGCATAACTCTTGGATTCTTCACCATCCATCAGCATTAGACATGTTTGACCAAATCATTGACGCGTCAAAGGGAAAACAAATTGTCATGTTTCTGGACTATGATGGCACGCTGTCTCCTATAGTTGACGACCCTGACCGTGCTTTCATGTCTGATTCGATGAGAAAAACAGTGAGGAAACTTGCTAGGTGTTTCCCTACTGCTATAGTGACCGGCAGATGCAAAGACAAGGTGTACAATTTTGTTCGCTTGGCAGAGCTATATTATGCAGGAAGCCATGGCATGGATATTAAAGGACCAACAAGAAGCTCCAAATACAACAAAGATAGCAAAGCTGAGGCAATCCTTTGTCAACCTGCCAGTGATTTTCTTCCCATGATAGATGAGGTGTATCAACAATTAGTTGAAAAGACAAAATCAACTCCTGGAGCTCTGGTTGAGAACAACAAGTTCTGTCTTTCTGTTCATTTTCGTTGTGTTGATGAAAAGAAATGGAGTGAACTGGCACGCCAAGTGAAATCAGTTTTAAAGGAGTACCCGAAACTTCGACTTACCCAAGGAAGAAAGGTGCTAGAGATTCGTCCCACTATTAAATGGGACAAAGGGAAAGCCTTGGAATTTTTATTAGAGTCACTTGGTGAGTTTTAG

Predicted protein sequences of Glyma11g38230

Limit To All Plant Sequences

>Glyma11g38230.1   sequence type=predicted peptide   gene model=Glyma11g38230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTQQNVVVSDTKSGVSLTVFSTTQKPPAAPGGYISIPRRRVLKNLEINGGQRINAWVESMRASSPTHHKSTPSLSQEHNSWILHHPSALDMFDQIIDASKGKQIVMFLDYDGTLSPIVDDPDRAFMSDSMRKTVRKLARCFPTAIVTGRCKDKVYNFVRLAELYYAGSHGMDIKGPTRSSKYNKDSKAEAILCQPASDFLPMIDEVYQQLVEKTKSTPGALVENNKFCLSVHFRCVDEKKWSELARQVKSVLKEYPKLRLTQGRKVLEIRPTIKWDKGKALEFLLESLGLANCSDVFPVYIGDDRSDEDAFKKLRDRGQGFGILVSKFPKDTSASYSLQEPNEVMNFLQRLVEWKHVSLRARS*

>Glyma11g38230.2   sequence type=predicted peptide   gene model=Glyma11g38230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTQQNVVVSDTKSGVSLTVFSTTQKPPAAPGGYISIPRRRVLKNLEINGGQRINAWVESMRASSPTHHKSTPSLSQEHNSWILHHPSALDMFDQIIDASKGKQIVMFLDYDGTLSPIVDDPDRAFMSDSMRKTVRKLARCFPTAIVTGRCKDKVYNFVRLAELYYAGSHGMDIKGPTRSSKYNKDSKAEAILCQPASDFLPMIDEVYQQLVEKTKSTPGALVENNKFCLSVHFRCVDEKKWSELARQVKSVLKEYPKLRLTQGRKVLEIRPTIKWDKGKALEFLLESLGEF*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain