SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G10210 | AT | Annotation by Michelle Graham. TAIR10: CONTAINS InterPro DOMAIN/s: C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65030.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:3206236-3206829 FORWARD LENGTH=197 | SoyBase | E_val: 7.00E-28 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PF00168 | PFAM | C2 domain | JGI | ISS | |
| UniRef100_G7J3S7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: GRAS family transcription factor n=1 Tax=Medicago truncatula RepID=G7J3S7_MEDTR | SoyBase | E_val: 1.00E-49 | ISS |
| UniRef100_I1LNL1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LNL1_SOYBN | SoyBase | E_val: 2.00E-146 | ISS |
|
Glyma11g38150 not represented in the dataset |
Glyma11g38150 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma18g02090 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g239900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g38150.1 sequence type=CDS gene model=Glyma11g38150 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATCATTCACATAAACTTCCTTCCTTTAGTTGTGAACTTAGAATTATACAAGCCCAAAACGTTGAGTCCATAAAGACCACAAAAAACCTATTTACCAGGTTATATCTTCCAGCAGGAAACAACAAAAGAATTCAACTCAACACCAAAAAAGTTTCCTCCAATACCCAATGTGTTCCCTTTTGGAACGAGTCCTTCAACTTAGATTGTTCATGTCCCCAAGAATTCTTGGAAAGCCTTAAGAAGGAAAGCCTTGTGTTGGAGCTAAGGCAAAACAAGATTTTTAGGTCACATTTGGTGGGAAAGGGTGAGATTCCTTGGAAGGCAATTCTTGAATCACCAAAGATGGAATTCAAGGAATGGGTGAAGATGGATTTGGTGAGTGGAATTAGTGATTGTGAAGATATTATGTTCAAGGCACCACAAGTGCAAGTGGAGATTAAAATACAAGTGGAGAAGGAGAATAATAATAATAATAGGAGAAAGAGGTTGAACAATAAGTGGGACGAGTGTGGATGCAAACATGGTCATGGTCAACATGCATGGTGCAGTGCTGATGATTATGATATATATGCTTTGGGGGCAGTTTTGGAGGCTTTTTGA
>Glyma11g38150.1 sequence type=predicted peptide gene model=Glyma11g38150 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDHSHKLPSFSCELRIIQAQNVESIKTTKNLFTRLYLPAGNNKRIQLNTKKVSSNTQCVPFWNESFNLDCSCPQEFLESLKKESLVLELRQNKIFRSHLVGKGEIPWKAILESPKMEFKEWVKMDLVSGISDCEDIMFKAPQVQVEIKIQVEKENNNNNRRKRLNNKWDECGCKHGHGQHAWCSADDYDIYALGAVLEAF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
