Glyma11g38090 - SoyBase

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Report for Sequence Feature Glyma11g38090

Feature Type:	gene_model
Chromosome:	Gm11
Start:	39043401
stop:	39050802
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g38090

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G22310	AT	Annotation by Michelle Graham. TAIR10: ubiquitin-specific protease 4 \| chr2:9476733-9478825 REVERSE LENGTH=365	SoyBase	E_val: 0	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0006511	GO-bp	Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0004221	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ubiquitin thiolesterase activity	SoyBase	N/A	ISS
GO:0004843	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ubiquitin-specific protease activity	SoyBase	N/A	ISS
KOG1871	KOG	Ubiquitin-specific protease	JGI		ISS
PTHR24006	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24006:SF54	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00443	PFAM	Ubiquitin carboxyl-terminal hydrolase	JGI		ISS
UniRef100_I1LNK3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Glycine max RepID=I1LNK3_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1LNK3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Glycine max RepID=I1LNK3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma11g38090

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g38090 not represented in the dataset	Glyma11g38090 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g38090

Paralog	Evidence	Comments
Glyma18g02020	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g38090 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g240500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g38090

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma11g38090

Limit To All Plant Sequences

>Glyma11g38090.2   sequence type=transcript   gene model=Glyma11g38090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATAAGCACGCCATTGTGGCTTATGGTGCCGCCATAGCGGTCTCCCTATACAAATGGCCTATGGCGGTTGACAAAAAATCTGCCATGACACCACCATTTAACAACACTGCTGTCAAGTATATTAGGCACTATACTTCTGTGTTCCATTTCGAGAACAATTGCTAGAGTATTATGCAAATAACAAAAGCATAGCGGATGCAGAGGAAAATCTTTTGACTTGCTTAGCCGACTTATTTTCACAGTTCTCAGAAGAAGAAAACAGGTGTCATTGCTCCCAAACGATTTGTACAAAGGTTGAAAAAACAGAATGAACTCTTCCGTAGCTATATGCACCAGGATGCCCATGAATTCTTGAACTTTTTGTTAAATGAACTTGTTGACATTCTGGAGAAAGAGGCCCAGTCTGCAAAAAATGATCAAGAGACTTCACCACCATCTGAAAAGGCTGCAAATGGACCTAAGAATGGTCTAGCCAATGGTGCTAAAAAGGAGCCTTTAGTTACTTGGGTGCATAAAAATTTTCAGGGAATACTCACCAACGAGACTAGGTGCCTGCGATGTGAAACTGTGACAGCTAGGGATGAAACATTTTTTGATTTGAGCCTTGATATTGAACAAAATAGTTCAATTACAAGTTGTTTGAAAAACTTCAGTTCGACGGAGACATTGAATGCCGAAGACAAATTTTTTTGTGACAAGTGCTGCAGTTTGCAAGAAGCTCAGAAGAGAATGAAGATAAAGAAACCACCTCACATCTTGGTCATCCACCTTAAGCGGTTTAAATACATTGAACAACTGGGTCGCTACAAGAAGCTGTCTTACCGGGTTGTCTTCCCTCTTGAGCTGAAATTGAGCGATACTGCTGAAAATTCAGATATTGAGTATTCTCTATTTGCAGTAGTTGTCCATGTTGGGAGTGGGCCCAACCATGGGCATTATGTAAGCCTTGTGAAAAGCCATAACCACTGGTTATTTTTTGACGACGAAAATGTTGAGATGATTGATGAGTCTGCCGTTCAGACATTCTTTGGGTCATCGCAAGAATATTCCAGCAATACAGACCATGGTTACATTTTGTTCTATGAGAGCATTGGCTCTGGTAACAGGAACTAGACGGAGGAGCCTTATGAGTTTTAGATACTTAAATCATTTGGACTTGTCTTTTTCATCTGTTTAATTATTAATTATTTTTTTCCCGTTTTATTCAACCTGCTTGAGTAGTTGTTATACATCAATGAGAGGATACGGGTTGTGAAAATGTATACTTAGTGGTCGGCATGTACAGTGGATAGTGGAAGCACTGTCCTTTTTCCCCTTATTTTTTTTTACAATTAAGAGCAGTGTATATGGTTTGAGAATTTCACCGACAGTATATTCACGATGTTAACTGTTAAGTATTAAATCAATAGAAACACGATGCAATGGCAGGATCACTCGTAAATTATGGTGTTTTCATCTACATTGTCATACA

>Glyma11g38090.3   sequence type=transcript   gene model=Glyma11g38090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCACCATTTAACAACACTGCTGTCAAGTATATTAGGCACTATACTTCTGTGTTCCATTTCGAGAACAATTGCTAGAGTATTATGCAAATAACAAAAGCATAGCGGATGCAGAGGAAAATCTTTTGACTTGCTTAGCCGACTTATTTTCACAGATAAGTTCTCAGAAGAAGAAAACAGGTGTCATTGCTCCCAAACGATTTGTACAAAGGTTGAAAAAACAGAATGAACTCTTCCGTAGCTATATGCACCAGGATGCCCATGAATTCTTGAACTTTTTGTTAAATGAACTTGTTGACATTCTGGAGAAAGAGGCCCAGTCTGCAAAAAATGATCAAGAGACTTCACCACCATCTGAAAAGGCTGCAAATGGACCTAAGAATGGTCTAGCCAATGGTGCTAAAAAGGAGCCTTTAGTTACTTGGGTGCATAAAAATTTTCAGGGAATACTCACCAACGAGACTAGGTGCCTGCGATGTGAAACTGTGACAGCTAGGGATGAAACATTTTTTGATTTGAGCCTTGATATTGAACAAAATAGTTCAATTACAAGTTGTTTGAAAAACTTCAGTTCGACGGAGACATTGAATGCCGAAGACAAATTTTTTTGTGACAAGTGCTGCAGTTTGCAAGAAGCTCAGAAGAGAATGAAGATAAAGAAACCACCTCACATCTTGGTCATCCACCTTAAGCGGTTTAAATACATTGAACAACTGGGTCGCTACAAGAAGCTGTCTTACCGGGTTGTCTTCCCTCTTGAGCTGAAATTGAGCGATACTGCTGAAAATTCAGATATTGAGTATTCTCTATTTGCAGTAGTTGTCCATGTTGGGAGTGGGCCCAACCATGGGCATTATGTAAGCCTTGTGAAAAGCCATAACCACTGGTTATTTTTTGACGACGAAAATGTTGAGATGATTGATGAGTCTGCCGTTCAGACATTCTTTGGGTCATCGCAAGAATATTCCAGCAATACAGACCATGGTTACATTTTGTTCTATGAGAGCATTGGCTCTGGTAACAGGAACTAGACGGAGGAGCCTTATGAGTTTTAGATACTTAAATCATTTGGACTTGTCTTTTTCATCTGTTTAATTATTAATTATTTTTTTCCCGTTTTATTCAACCTGCTTGAGTAGTTGTTATACATCAATGAGAGGATACGGGTTGTGAAAATGTATACTTAGTGGTCGGCATGTACAGTGGATAGTGGAAGCACTGTCCTTTTTCCCCTTATTTTTTTTTACAATTAAGAGCAGTGTATATGGTTTGAGAATTTCACCGACAGTATATTCACGATGTTAACTGTTAAGTATTAAATCAATAGAAACACGATGCAATGGCAGGATCACTCGTAAATTATGGTGTTTTCATCTACATTGTCATACA

Coding sequences of Glyma11g38090

Limit To All Plant Sequences

>Glyma11g38090.1   sequence type=CDS   gene model=Glyma11g38090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGCTGCGGGCTCCAAGCTCGAGAAGGCTCTCGGCGACCAATTCCCTGAAGGAGAGCGTTACTTTGGCCTTGAGAATTTCGGCAATACTTGTTACTGCAACAGCGTTTTGCAGGCACTATACTTCTGTGTTCCATTTCGAGAACAATTGCTAGAGTATTATGCAAATAACAAAAGCATAGCGGATGCAGAGGAAAATCTTTTGACTTGCTTAGCCGACTTATTTTCACAGATAAGTTCTCAGAAGAAGAAAACAGGTGTCATTGCTCCCAAACGATTTGTACAAAGGTTGAAAAAACAGAATGAACTCTTCCGTAGCTATATGCACCAGGATGCCCATGAATTCTTGAACTTTTTGTTAAATGAACTTGTTGACATTCTGGAGAAAGAGGCCCAGTCTGCAAAAAATGATCAAGAGACTTCACCACCATCTGAAAAGGCTGCAAATGGACCTAAGAATGGTCTAGCCAATGGTGCTAAAAAGGAGCCTTTAGTTACTTGGGTGCATAAAAATTTTCAGGGAATACTCACCAACGAGACTAGGTGCCTGCGATGTGAAACTGTGACAGCTAGGGATGAAACATTTTTTGATTTGAGCCTTGATATTGAACAAAATAGTTCAATTACAAGTTGTTTGAAAAACTTCAGTTCGACGGAGACATTGAATGCCGAAGACAAATTTTTTTGTGACAAGTGCTGCAGTTTGCAAGAAGCTCAGAAGAGAATGAAGATAAAGAAACCACCTCACATCTTGGTCATCCACCTTAAGCGGTTTAAATACATTGAACAACTGGGTCGCTACAAGAAGCTGTCTTACCGGGTTGTCTTCCCTCTTGAGCTGAAATTGAGCGATACTGCTGAAAATTCAGATATTGAGTATTCTCTATTTGCAGTAGTTGTCCATGTTGGGAGTGGGCCCAACCATGGGCATTATGTAAGCCTTGTGAAAAGCCATAACCACTGGTTATTTTTTGACGACGAAAATGTTGAGATGATTGATGAGTCTGCCGTTCAGACATTCTTTGGGTCATCGCAAGAATATTCCAGCAATACAGACCATGGTTACATTTTGTTCTATGAGAGCATTGGCTCTGGTAACAGGAACTAG

>Glyma11g38090.2   sequence type=CDS   gene model=Glyma11g38090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCACCAGGATGCCCATGAATTCTTGAACTTTTTGTTAAATGAACTTGTTGACATTCTGGAGAAAGAGGCCCAGTCTGCAAAAAATGATCAAGAGACTTCACCACCATCTGAAAAGGCTGCAAATGGACCTAAGAATGGTCTAGCCAATGGTGCTAAAAAGGAGCCTTTAGTTACTTGGGTGCATAAAAATTTTCAGGGAATACTCACCAACGAGACTAGGTGCCTGCGATGTGAAACTGTGACAGCTAGGGATGAAACATTTTTTGATTTGAGCCTTGATATTGAACAAAATAGTTCAATTACAAGTTGTTTGAAAAACTTCAGTTCGACGGAGACATTGAATGCCGAAGACAAATTTTTTTGTGACAAGTGCTGCAGTTTGCAAGAAGCTCAGAAGAGAATGAAGATAAAGAAACCACCTCACATCTTGGTCATCCACCTTAAGCGGTTTAAATACATTGAACAACTGGGTCGCTACAAGAAGCTGTCTTACCGGGTTGTCTTCCCTCTTGAGCTGAAATTGAGCGATACTGCTGAAAATTCAGATATTGAGTATTCTCTATTTGCAGTAGTTGTCCATGTTGGGAGTGGGCCCAACCATGGGCATTATGTAAGCCTTGTGAAAAGCCATAACCACTGGTTATTTTTTGACGACGAAAATGTTGAGATGATTGATGAGTCTGCCGTTCAGACATTCTTTGGGTCATCGCAAGAATATTCCAGCAATACAGACCATGGTTACATTTTGTTCTATGAGAGCATTGGCTCTGGTAACAGGAACTAG

>Glyma11g38090.3   sequence type=CDS   gene model=Glyma11g38090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCACCAGGATGCCCATGAATTCTTGAACTTTTTGTTAAATGAACTTGTTGACATTCTGGAGAAAGAGGCCCAGTCTGCAAAAAATGATCAAGAGACTTCACCACCATCTGAAAAGGCTGCAAATGGACCTAAGAATGGTCTAGCCAATGGTGCTAAAAAGGAGCCTTTAGTTACTTGGGTGCATAAAAATTTTCAGGGAATACTCACCAACGAGACTAGGTGCCTGCGATGTGAAACTGTGACAGCTAGGGATGAAACATTTTTTGATTTGAGCCTTGATATTGAACAAAATAGTTCAATTACAAGTTGTTTGAAAAACTTCAGTTCGACGGAGACATTGAATGCCGAAGACAAATTTTTTTGTGACAAGTGCTGCAGTTTGCAAGAAGCTCAGAAGAGAATGAAGATAAAGAAACCACCTCACATCTTGGTCATCCACCTTAAGCGGTTTAAATACATTGAACAACTGGGTCGCTACAAGAAGCTGTCTTACCGGGTTGTCTTCCCTCTTGAGCTGAAATTGAGCGATACTGCTGAAAATTCAGATATTGAGTATTCTCTATTTGCAGTAGTTGTCCATGTTGGGAGTGGGCCCAACCATGGGCATTATGTAAGCCTTGTGAAAAGCCATAACCACTGGTTATTTTTTGACGACGAAAATGTTGAGATGATTGATGAGTCTGCCGTTCAGACATTCTTTGGGTCATCGCAAGAATATTCCAGCAATACAGACCATGGTTACATTTTGTTCTATGAGAGCATTGGCTCTGGTAACAGGAACTAG

Predicted protein sequences of Glyma11g38090

Limit To All Plant Sequences

>Glyma11g38090.1   sequence type=predicted peptide   gene model=Glyma11g38090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGAAGSKLEKALGDQFPEGERYFGLENFGNTCYCNSVLQALYFCVPFREQLLEYYANNKSIADAEENLLTCLADLFSQISSQKKKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNFLLNELVDILEKEAQSAKNDQETSPPSEKAANGPKNGLANGAKKEPLVTWVHKNFQGILTNETRCLRCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKPPHILVIHLKRFKYIEQLGRYKKLSYRVVFPLELKLSDTAENSDIEYSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMIDESAVQTFFGSSQEYSSNTDHGYILFYESIGSGNRN*

>Glyma11g38090.2   sequence type=predicted peptide   gene model=Glyma11g38090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHQDAHEFLNFLLNELVDILEKEAQSAKNDQETSPPSEKAANGPKNGLANGAKKEPLVTWVHKNFQGILTNETRCLRCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKPPHILVIHLKRFKYIEQLGRYKKLSYRVVFPLELKLSDTAENSDIEYSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMIDESAVQTFFGSSQEYSSNTDHGYILFYESIGSGNRN*

>Glyma11g38090.3   sequence type=predicted peptide   gene model=Glyma11g38090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHQDAHEFLNFLLNELVDILEKEAQSAKNDQETSPPSEKAANGPKNGLANGAKKEPLVTWVHKNFQGILTNETRCLRCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKPPHILVIHLKRFKYIEQLGRYKKLSYRVVFPLELKLSDTAENSDIEYSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMIDESAVQTFFGSSQEYSSNTDHGYILFYESIGSGNRN*

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