Glyma11g37951 - SoyBase

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Report for Sequence Feature Glyma11g37951

Feature Type:	gene_model
Chromosome:	Gm11
Start:	38940678
stop:	38943982
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g37951

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G31860	AT	Annotation by Michelle Graham. TAIR10: histidine biosynthesis bifunctional protein (HISIE) \| chr1:11434250-11436530 REVERSE LENGTH=281	SoyBase	E_val: 2.00E-21	ISS
GO:0000105	GO-bp	Annotation by Michelle Graham. GO Biological Process: histidine biosynthetic process	SoyBase	N/A	ISS
GO:0009165	GO-bp	Annotation by Michelle Graham. GO Biological Process: nucleotide biosynthetic process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0004635	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphoribosyl-AMP cyclohydrolase activity	SoyBase	N/A	ISS
GO:0004636	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphoribosyl-ATP diphosphatase activity	SoyBase	N/A	ISS
PTHR21256	Panther	HISTIDINOL DEHYDROGENASE (HDH)	JGI		ISS
PTHR21256:SF5	Panther	AT-IE (ARABIDOPSIS THALIANA BIFUNCTIONAL HISI-HISE	JGI		ISS
PF01503	PFAM	Phosphoribosyl-ATP pyrophosphohydrolase	JGI		ISS
UniRef100_D7KGN4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AT-IE n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7KGN4_ARALL	SoyBase	E_val: 3.00E-19	ISS
UniRef100_I1LNI2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LNI2_SOYBN	SoyBase	E_val: 4.00E-53	ISS

Expression Patterns of Glyma11g37951

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g37951 not represented in the dataset	Glyma11g37951 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma11g37951 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g241900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g37951

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma11g37951

Limit To All Plant Sequences

>Glyma11g37951.2   sequence type=transcript   gene model=Glyma11g37951   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTGTTAAAAAACAGTTTTTTACATAAGATATAAATCTTATTTTTAAGAAATTCTTCCTGCCACGTAGATTTGTTCCAATAGGAAAGAAACTCTAGGAAACAGTTTCTTCACTTAAAAACCCCTTTAAGAACCCCCAATTGGAGATCCTATAAGAAACTTCAAGAAATTTTAAGAAAGTCATACTTTTATATATATATTTTTTTTACTTTCACTTGATTATGATTGAAATAAAATAATTAATTCAATTTTTTCATTATTGCATATAAAAATATGATCTCCCACGGTGCATGTGGTTTCCCCAAATCTCTTCCTCAAAATCAAATCTCGTGTGAGGTACAACGAAGGTGCGACAGAGGTGTGGTAGCAAGGCTAGGTTTGACAGACCAGCGACGGCACAATGCGACAACAAGGCTAGGTGTGATGAAGGTGCGGCATCAAGGCTAGGTGTGACCACACAACGACAAGGTGAGGTGTGATGACACGGTGCGATGCAGCAGCAAGGCAACCGTTGAGAGAGGTGCAGGCTTACTTCAAATCAATGGCTGTTTCGTATGTTCACATGCTTCAACGTAACAGGGCTTTCCACAAGGAGAAGAGGCAAACGAGTTGTGTCAAATCTAGAGAACAATGAGGGCGAGTCACGTACTGCTTCAGAGATGGCTGATGTACTCTATCATTCCATGGCTCTGTTGGCAAAGAAAGGTGTCAAAATAGAAGATGTTTTGCAGGTTCTTCGTCTGAGATTTTCCCAATCTGGTATTGAGGAGAAGAAAAGTCGTGTATTCCAGAAATCAATGGATTGAATGTTCAGTAAAGTCTATATCTCAACCAGTATATTTAGCTTTTGGCGACATAGCCAGATGCACCATTCGCGTTCTTATCGATGTGACTATGCAGATTAGGGTAACATTGTTAAATAGTGTAGAGAATGTCAAGAACACCATGTAACTGTGATCCTCCCATTTTTGCAGAATTCAGTTTTTCATTTAGTTAATTGTATTGCTTGCATCATGCTTATGTGTAGCAAACTGCAAGTCATGCACTAAGCTCTTAACTTTTGTGTGTCTTAGTTATTTTCTTAAGTGTCTTTTAAAGTTGAGTAGAATTGATTTTGAACCGTTAAATGTAGTTAGATATGTGTTAAATTTCAACCGTGGATTTATTAAAATGTGTGTATGGTGT

>Glyma11g37951.3   sequence type=transcript   gene model=Glyma11g37951   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTGTTAAAAAACAGTTTTTTACATAAGATATAAATCTTATTTTTAAGAAATTCTTCCTGCCACGTAGATTTGTTCCAATAGGAAAGAAACTCTAGGAAACAGTTTCTTCACTTAAAAACCCCTTTAAGAACCCCCAATTGGAGATCCTATAAGAAACTTCAAGAAATTTTAAGAAAGTCATACTTTTATATATATATTTTTTTTACTTTCACTTGATTATGATTGAAATAAAATAATTAATTCAATTTTTTCATTATTGCATATAAAAATATGATCTCCCACGGTGCATGTGGTTTCCCCAAATCTCTTCCTCAAAATCAAATCTCGTGTGAGGTACAACGAAGGTGCGACAGAGGTGTGGTAGCAAGGCTAGGTTTGACAGACCAGCGACGGCACAATGCGACAACAAGGCTAGGTGTGATGAAGGTGCGGCATCAAGGCTAGGTGTGACCACACAACGACAAGGTGAGGTGTGATGACACGGTGCGATGCAGCAGCAAGGCAACCGTTGAGAGAGGTGCAGGCTTACTTCAAATCAATGGCTGTTTCGTATGTTCACATGCTTCAACGTAACAGGGCTTTCCACAAGGGTAACTCTCCTATCCTAATTGCATTTACAAGGCAAGAAGGAACCACTGTTTAGTTTTTGCTTCTATGCACACACCAGACCCTAAGAGAAGAGGCAAACGAGTTGTGTCAAATCTAGAGAACAATGAGGGCGAGTCACGTACTGCTTCAGAGATGGCTGATGTACTCTATCATTCCATGGCTCTGTTGGCAAAGAAAGGTGTCAAAATAGAAGATGTTTTGCAGGTTCTTCGTCTGAGATTTTCCCAATCTGGTATTGAGGAGAAGAAAAGTCGTGTATTCCAGAAATCAATGGATTGAATGTTCAGTAAAGTCTATATCTCAACCAGTATATTTAGCTTTTGGCGACATAGCCAGATGCACCATTCGCGTTCTTATCGATGTGACTATGCAGATTAGGGTAACATTGTTAAATAGTGTAGAGAATGTCAAGAACACCATGTAACTGTGATCCTCCCATTTTTGCAGAATTCAGTTTTTCATTTAGTTAATTGTATTGCTTGCATCATGCTTATGTGTAGCAAACTGCAAGTCATGCACTAAGCTCTTAACTTTTGTGTGTCTTAGTTATTTTCTTAAGTGTCTTTTAAAGTTGAGTAGAATTGATTTTGAACCGTTAAATGTAGTTAGATATGTGTTAAATTTCAACCGTGGATTTATTAAAATGTGTGTATGGTGT

Coding sequences of Glyma11g37951

Limit To All Plant Sequences

>Glyma11g37951.1   sequence type=CDS   gene model=Glyma11g37951   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGTTTCGTATGTTCACATGCTTCAACGTAACAGGGCTTTCCACAAGGGTAACTCTCCTATCCTAATTGCATTTACAAGGCAAGAAGGAACCACTATTGTTTTCTTAAGATCCCAGACTGTAACTGTATCTTTCTACCTGCAGAGAAGAGGCAAACGAGTTGTGTCAAATCTAGAGAACAATGAGGGCGAGTCACGTACTGCTTCAGAGATGGCTGATGTACTCTATCATTCCATGGCTCTGTTGGCAAAGAAAGGTGTCAAAATAGAAGATGTTTTGCAGGTTCTTCGTCTGAGATTTTCCCAATCTGGTATTGAGGAGAAGAAAAGTCGTGTATTCCAGAAATCAATGGATTGA

>Glyma11g37951.2   sequence type=CDS   gene model=Glyma11g37951   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTCACATGCTTCAACGTAACAGGGCTTTCCACAAGGAGAAGAGGCAAACGAGTTGTGTCAAATCTAGAGAACAATGAGGGCGAGTCACGTACTGCTTCAGAGATGGCTGATGTACTCTATCATTCCATGGCTCTGTTGGCAAAGAAAGGTGTCAAAATAGAAGATGTTTTGCAGGTTCTTCGTCTGAGATTTTCCCAATCTGGTATTGAGGAGAAGAAAAGTCGTGTATTCCAGAAATCAATGGATTGA

>Glyma11g37951.3   sequence type=CDS   gene model=Glyma11g37951   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCACACACCAGACCCTAAGAGAAGAGGCAAACGAGTTGTGTCAAATCTAGAGAACAATGAGGGCGAGTCACGTACTGCTTCAGAGATGGCTGATGTACTCTATCATTCCATGGCTCTGTTGGCAAAGAAAGGTGTCAAAATAGAAGATGTTTTGCAGGTTCTTCGTCTGAGATTTTCCCAATCTGGTATTGAGGAGAAGAAAAGTCGTGTATTCCAGAAATCAATGGATTGA

Predicted protein sequences of Glyma11g37951

Limit To All Plant Sequences

>Glyma11g37951.1   sequence type=predicted peptide   gene model=Glyma11g37951   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAVSYVHMLQRNRAFHKGNSPILIAFTRQEGTTIVFLRSQTVTVSFYLQRRGKRVVSNLENNEGESRTASEMADVLYHSMALLAKKGVKIEDVLQVLRLRFSQSGIEEKKSRVFQKSMD*

>Glyma11g37951.2   sequence type=predicted peptide   gene model=Glyma11g37951   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFTCFNVTGLSTRRRGKRVVSNLENNEGESRTASEMADVLYHSMALLAKKGVKIEDVLQVLRLRFSQSGIEEKKSRVFQKSMD*

>Glyma11g37951.3   sequence type=predicted peptide   gene model=Glyma11g37951   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHTPDPKRRGKRVVSNLENNEGESRTASEMADVLYHSMALLAKKGVKIEDVLQVLRLRFSQSGIEEKKSRVFQKSMD*

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