Glyma11g37881 - SoyBase

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Report for Sequence Feature Glyma11g37881

Feature Type:	gene_model
Chromosome:	Gm11
Start:	38865679
stop:	38869665
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g37881

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
PTHR10551	Panther	FASCIN	JGI		ISS
PTHR10551:SF6	Panther	OS10G0370800 PROTEIN	JGI		ISS
PF00150	PFAM	Cellulase (glycosyl hydrolase family 5)	JGI		ISS
UniRef100_G7J373	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Glucan 1,3-beta-glucosidase n=1 Tax=Medicago truncatula RepID=G7J373_MEDTR	SoyBase	E_val: 9.00E-156	ISS
UniRef100_I1MYN6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1MYN6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma11g37881

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g37881 not represented in the dataset	Glyma11g37881 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g37881

Paralog	Evidence	Comments
Glyma18g01781	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g37881 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g242600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g37881

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma11g37881

Limit To All Plant Sequences

>Glyma11g37881.1   sequence type=CDS   gene model=Glyma11g37881   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGAAAATTTGCAGGTTGTGGCTTAGCTTATGTCGTAACCACTGTCAATTTGGAAGATACTAGACATGGAATTGAGCGGGACGGAAAAAATAGGATTCACCTCAAGATAAAGGGTGGGGCATATCTTCAGAGACATAGAAATAGCTTTATCACCATAGAGGATTTCAAATTTCTATATAAACATGGAATAAATACTGTGAGGATACCAGTTGGGTGGTGGGTTGCTTATGATCCTGATCCTCCGAGTCCATTTATTGGAGGAAGTCTTGAAGCTCTAGATAATGCATTTTCATGGGCACAGGAATATGATATTAAATGCATAATTGACCTTCATGCTGCTCCTGCTTCCCAAAATGGGATGGAGCATAGTGCAAGCAGAGATGGATTTACGGGCTGGCCAACTTCTCCTGATTATATTTCCGACTCATTACATGCTATTGATTTTTTAGTTTCTAGATATGCAAAAAATCCTGCTTTGCTGGGAATTGAGCTATTGAATGAACCATCTGCTGCCACAGTTTCATTAGATGTTTTAATTTCATATTACAAGCAGGGCTACCAAATTGTTCGAAAATATTCATCATCAGCTTATGTGATAATCTGCCAGAGAATTGGTGTTGCAGATCCTATGGAACTTTATCAAGCCAACATAGGATCTCACAACTTAGTTTTGGATTTGCATTTCTACAATCTCTTTGACACATTTTTCGATAATATGAGTGCTATGGATAATATTCAATACATATACAAAAGTCGGGTAGGTCAACTGCAAGCCTTAAACAATTCAAATGGCCCACTTGTTTTAGTTGGAGAGTGGGTGAACGAGTGGAATGTGACAAACGGATCCCTAAAAGATTAA

Predicted protein sequences of Glyma11g37881

Limit To All Plant Sequences

>Glyma11g37881.1   sequence type=predicted peptide   gene model=Glyma11g37881   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRKFAGCGLAYVVTTVNLEDTRHGIERDGKNRIHLKIKGGAYLQRHRNSFITIEDFKFLYKHGINTVRIPVGWWVAYDPDPPSPFIGGSLEALDNAFSWAQEYDIKCIIDLHAAPASQNGMEHSASRDGFTGWPTSPDYISDSLHAIDFLVSRYAKNPALLGIELLNEPSAATVSLDVLISYYKQGYQIVRKYSSSAYVIICQRIGVADPMELYQANIGSHNLVLDLHFYNLFDTFFDNMSAMDNIQYIYKSRVGQLQALNNSNGPLVLVGEWVNEWNVTNGSLKD*

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