SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G13120 | AT | Annotation by Michelle Graham. TAIR10: embryo defective 1745 | chr1:4469334-4472775 REVERSE LENGTH=611 | SoyBase | E_val: 2.00E-155 | ISS |
| GO:0006312 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mitotic recombination | SoyBase | N/A | ISS |
| GO:0009560 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo sac egg cell differentiation | SoyBase | N/A | ISS |
| GO:0009793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy | SoyBase | N/A | ISS |
| GO:0048316 | GO-bp | Annotation by Michelle Graham. GO Biological Process: seed development | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005635 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nuclear envelope | SoyBase | N/A | ISS |
| GO:0005643 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nuclear pore | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| KOG2412 | KOG | Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor | JGI | ISS | |
| PTHR12960 | Panther | GLE-1-RELATED | JGI | ISS | |
| PF07817 | PFAM | GLE1-like protein | JGI | ISS | |
| UniRef100_G7J344 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Nucleoporin GLE1 n=1 Tax=Medicago truncatula RepID=G7J344_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233D3E6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233D3E6 related cluster n=1 Tax=unknown RepID=UPI000233D3E6 | SoyBase | E_val: 0 | ISS |
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Glyma11g37710 not represented in the dataset |
Glyma11g37710 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma18g01641 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g244100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g37710.2 sequence type=CDS gene model=Glyma11g37710 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGAGCTGTCAAATTGAATCTTCGTTGTTCTTCGCAACGAGTCGATGGCGTTGCCGCTGAACCCGAACCTGATTGGACCTTCGACGATCTTGTTTCGGAACTCAACGCTTTGGAGACTAAGCTCGCCACTAATGCTTCTTCTTCCACCCAACGTTCTTCACCTCTCGATAAATCAATATCGAAGTGTGGGAAAGAAATCCAGAGAGGTAGGGCTTTCGTGTTGCGTGCCGACGAGTTTGACATGGAGGACTCAGAGAGCGACGATGATGATCATGTTGACAGGGCTTTGGTAGTAACTGACAGTGGCAAACGGTTCACCTGTGATGAACTTTATCTGAGTGTCAGTGATGATGATTCTGACATTGCCTCTGGTTTTGAAGTGAGACCCTACTTGATGGATGAATTGGGAGAGGTCGAAGGTGCCTTGTTGGAGTTGACACATGAACATCAGCTTAGGGTTAAGGATGAAATAAGGAACAAGATCTCGGCATTGGAGACAGCTCTGGTGAATGAAACTCAGAATTCTACTTCTTCCTTTCTTCGGGTTGAGAAATATAAAGAAACAAGGCTGGACTTGGATAAAAAGTTTGACACTCAATATCAGCGTCGGATTGCAGAAGCACTTGATAATCACTTGACAGCTGTTCAACGGGACCGTGAACTTAGATCACAAATAGAAGAAAGGAAAATAAGAAGTGATGCAGCTTATGAAGAGGCCAAGAGAAAGGTTGCTTTTGAAAAGCAGCAGCAAGAAAAGGCTAAAGCTGAAGCAGAGGCCAAACTTAGAGCTGAGGAAGCAAAACGAGAAGCTGAGAGCAAAGCAGCAATGGAGGCCAAGAAACAGGCAGCAATTGAAGCTGAAAAAAGCGCAGCAGTAGAAGCTGAAAGAAGAGCAGAAAAGGAAGCTACTGAAACTTCCAAAAGAGTTACTTCTGGAGGGACCCAACAAGCTACTGCCCATCCAACAGGTAATTTATATCGAGCTGCAGCAAATGCTTTGAATTTAGAACAGTGGAGACTGCAGAAACTGAAAGAGCTATGTGAGGGGAACCAAATGATAAGATCAAGTTATAATGAGGATTGTACCCGCCACGAGGGTCGCATTTCCCGGAATATAAGACAAATAAGGGGCATAAGTGACAATGTTAGGTCAAAAGCAAGTGAACTCACTAAACTTTTGAGTCATCCTCAATCTTTTCAATCAATCAGCATTGAGATATTTGCTAAAAAGGTTGTTGCATACTGTGCAAACCCCGCTAATGTGCCCTTTGCAAGTGCCTATGTCATTGTTCTTGTTACATCTCAGGTCCCACATGCTATGGATATTTTACTAGCTGAGCTTCACAGGGCTTGCATATATACTGTCCCAAAGCACCTGGTTTACAAGAAGTCTGCCTATCAATCAAAAGAGGCATACTTCAGAAGTATTGGCTATCGAGAAGATGATGAAAAGATGGAGAGTACGGAAGATTATTTAAAGCGGTTAGAATCATACATGAAGATGTATGGTGCACTGGTTCAGACTGAAATTACAAACTGTCAAAATTTTCACGGCTTGAAAGAAGGTTGGGCATGGCTTGCAAGGTTCTTGAATACACACCCAGCAAATCAATACACAGCTGTTTCGCTTAATGCATTCTTGCAAATGGCTGGATTTGCTCTCTATAACAGATATAAATCTCAATTCTTAAAGATGCTGAACGTCGTCTCTGAGAACTTTTTAGTTGATCTGAAATCACAGAATATACCAGAATTGGCGAGGACAGTTACGGAGATACAGACTTACATAGACGATAAGAAGTTCCTTCAAGAGCCAGAAGGAAGAAGCCTGCAGTCTGATTTGTTATCAACCAAGATACTTCAAGAGGCAGACAGATGGATACCGAAGCCTAGTTTTAATAATTATTATTGA
>Glyma11g37710.2 sequence type=predicted peptide gene model=Glyma11g37710 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGAVKLNLRCSSQRVDGVAAEPEPDWTFDDLVSELNALETKLATNASSSTQRSSPLDKSISKCGKEIQRGRAFVLRADEFDMEDSESDDDDHVDRALVVTDSGKRFTCDELYLSVSDDDSDIASGFEVRPYLMDELGEVEGALLELTHEHQLRVKDEIRNKISALETALVNETQNSTSSFLRVEKYKETRLDLDKKFDTQYQRRIAEALDNHLTAVQRDRELRSQIEERKIRSDAAYEEAKRKVAFEKQQQEKAKAEAEAKLRAEEAKREAESKAAMEAKKQAAIEAEKSAAVEAERRAEKEATETSKRVTSGGTQQATAHPTGNLYRAAANALNLEQWRLQKLKELCEGNQMIRSSYNEDCTRHEGRISRNIRQIRGISDNVRSKASELTKLLSHPQSFQSISIEIFAKKVVAYCANPANVPFASAYVIVLVTSQVPHAMDILLAELHRACIYTVPKHLVYKKSAYQSKEAYFRSIGYREDDEKMESTEDYLKRLESYMKMYGALVQTEITNCQNFHGLKEGWAWLARFLNTHPANQYTAVSLNAFLQMAGFALYNRYKSQFLKMLNVVSENFLVDLKSQNIPELARTVTEIQTYIDDKKFLQEPEGRSLQSDLLSTKILQEADRWIPKPSFNNYY*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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