Glyma11g37380 - SoyBase

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Report for Sequence Feature Glyma11g37380

Feature Type:	gene_model
Chromosome:	Gm11
Start:	38511513
stop:	38513709
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g37380

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G25980	AT	Annotation by Michelle Graham. TAIR10: DNA-binding HORMA family protein \| chr3:9503232-9504402 FORWARD LENGTH=209	SoyBase	E_val: 4.00E-135	ISS
GO:0007094	GO-bp	Annotation by Michelle Graham. GO Biological Process: mitotic cell cycle spindle assembly checkpoint	SoyBase	N/A	ISS
GO:0007346	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of mitotic cell cycle	SoyBase	N/A	ISS
GO:0008283	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell proliferation	SoyBase	N/A	ISS
GO:0016572	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone phosphorylation	SoyBase	N/A	ISS
GO:0042023	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA endoreduplication	SoyBase	N/A	ISS
GO:0043161	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteasomal ubiquitin-dependent protein catabolic process	SoyBase	N/A	ISS
GO:0043248	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteasome assembly	SoyBase	N/A	ISS
GO:0051510	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of unidimensional cell growth	SoyBase	N/A	ISS
GO:0051788	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to misfolded protein	SoyBase	N/A	ISS
GO:0000776	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: kinetochore	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005635	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nuclear envelope	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0010369	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chromocenter	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
KOG3285	KOG	Spindle assembly checkpoint protein	JGI		ISS
PTHR11842	Panther	MITOTIC SPINDLE ASSEMBLY CHECKPOINT PROTEIN MAD2	JGI		ISS
PTHR11842:SF11	Panther	MITOTIC SPINDLE ASSEMBLY CHECKPOINT PROTEIN MAD2A	JGI		ISS
PF02301	PFAM	HORMA domain	JGI		ISS
UniRef100_B9RMJ8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Plant mitotic spindle assembly checkpoint protein mad2, putative n=1 Tax=Ricinus communis RepID=B9RMJ8_RICCO	SoyBase	E_val: 9.00E-144	ISS
UniRef100_I1LNB9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LNB9_SOYBN	SoyBase	E_val: 1.00E-150	ISS

Expression Patterns of Glyma11g37380

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g37380 not represented in the dataset	Glyma11g37380 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g37380

Paralog	Evidence	Comments
Glyma18g01350	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g37380 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g247400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g37380

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma11g37380

Limit To All Plant Sequences

>Glyma11g37380.3   sequence type=transcript   gene model=Glyma11g37380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTCGCTCACAAGTGCTCCTCCGAAAACCGAAATAAAACCGTTCCCATCGTGCGAACAAGTTCAATCGATTCCAAAGTCTAAAACTGTGAACGTTCTTTATTGTGAACTCTCTGATAACCGAAGAAAAGGACATGGCCTCAAGAACAGTTGCAAAAGACATAATCACTCTTCGCGGTTCCGCTGCAATTGTTAGCGAGTTCTTCGGATATGCTGCTAACAGAAGAAAGCTTTGTGAAGGTTAAGAAATATGGCCTCCCCATGTTGCTTACTGAAGATGAGGGTGTCAAAACTTTTTTAGCCAATCTAACTGCTCAGCTCTCTGAATGGCTTGAAGCTGGCAAGTTGCAGAGGGTTGTCCTTGTTATAATGAGCAAGGCCACCAGTGAAGTGCTTGAAAGGTGGAACTTCAGCATTGAGACTGACTGCGAGGTTGTTGAGAAGGGTGTCTCGAGGGAAAAGAGTGACAAGGAGATCATGAGAGAGATACAAGCCATTATGAGGCAGATTGCTTCAAGTATCACTTATTTGCCATGCCTGGATGAACCTTGCATTTTTGATGTGTTAGCGTATACTGACAAGGATGTGGCAGTTCCATTCACATGGGTTGAGAGTGATCCAAAACTCATTGCAAATCCGCAAATGGTGAAATTGCATTCCTTTGATACTAAGATTCACAAGGTTGACACACTTGTATCATACAAGAATGACGAATGGGATGAGCAGTAATGGCAGTCCGTGTCTTGTATTTTTTTGTTCAGCTTCTTGCGTTTTGTTTCTTCAGGTCTTGAGTGAATTTCCTGTTTTGTTAGACCTGTAAATTGTGAATTTTCTATTCACATTGTTAGATGTGTGTACTACTCTGGGATTCAACGGGTATTTATTATTAATCCTCCCTTTTGTATGTTTGACTTGTTGTGGCAGTAAGAATTGCCATGTGGGATCTCAAGAAATCTCCCTGTTGTTTTCAGAAGGTTGGATTTATCAATCATTTCAGTCTTATGAAACAAATGCCGCATTCCGAGTATTAATTC

Coding sequences of Glyma11g37380

Limit To All Plant Sequences

>Glyma11g37380.1   sequence type=CDS   gene model=Glyma11g37380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCTCAAGAACAGTTGCAAAAGACATAATCACTCTTCGCGGTTCCGCTGCAATTGTTAGCGAGTTCTTCGGATATGCTGCTAACAGCATTCTTTACAACCGTGGAGTTTATCCAGAAGAAAGCTTTGTGAAGGTTAAGAAATATGGCCTCCCCATGTTGCTTACTGAAGATGAGGGTGTCAAAACTTTTTTAGCCAATCTAACTGCTCAGCTCTCTGAATGGCTTGAAGCTGGCAAGTTGCAGAGGGTTGTCCTTGTTATAATGAGCAAGGCCACCAGTGAAGTGCTTGAAAGGTGGAACTTCAGCATTGAGACTGACTGCGAGGTTGTTGAGAAGGGTGTCTCGAGGGAAAAGAGTGACAAGGAGATCATGAGAGAGATACAAGCCATTATGAGGCAGATTGCTTCAAGTATCACTTATTTGCCATGCCTGGATGAACCTTGCATTTTTGATGTGTTAGCGTATACTGACAAGGATGTGGCAGTTCCATTCACATGGGTTGAGAGTGATCCAAAACTCATTGCAAATCCGCAAATGGTGAAATTGCATTCCTTTGATACTAAGATTCACAAGGTTGACACACTTGTATCATACAAGAATGACGAATGGGATGAGCAGTAA

>Glyma11g37380.3   sequence type=CDS   gene model=Glyma11g37380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTGCTAACAGAAGAAAGCTTTGTGAAGGTTAAGAAATATGGCCTCCCCATGTTGCTTACTGAAGATGAGGGTGTCAAAACTTTTTTAGCCAATCTAACTGCTCAGCTCTCTGAATGGCTTGAAGCTGGCAAGTTGCAGAGGGTTGTCCTTGTTATAATGAGCAAGGCCACCAGTGAAGTGCTTGAAAGGTGGAACTTCAGCATTGAGACTGACTGCGAGGTTGTTGAGAAGGGTGTCTCGAGGGAAAAGAGTGACAAGGAGATCATGAGAGAGATACAAGCCATTATGAGGCAGATTGCTTCAAGTATCACTTATTTGCCATGCCTGGATGAACCTTGCATTTTTGATGTGTTAGCGTATACTGACAAGGATGTGGCAGTTCCATTCACATGGGTTGAGAGTGATCCAAAACTCATTGCAAATCCGCAAATGGTGAAATTGCATTCCTTTGATACTAAGATTCACAAGGTTGACACACTTGTATCATACAAGAATGACGAATGGGATGAGCAGTAA

Predicted protein sequences of Glyma11g37380

Limit To All Plant Sequences

>Glyma11g37380.1   sequence type=predicted peptide   gene model=Glyma11g37380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASRTVAKDIITLRGSAAIVSEFFGYAANSILYNRGVYPEESFVKVKKYGLPMLLTEDEGVKTFLANLTAQLSEWLEAGKLQRVVLVIMSKATSEVLERWNFSIETDCEVVEKGVSREKSDKEIMREIQAIMRQIASSITYLPCLDEPCIFDVLAYTDKDVAVPFTWVESDPKLIANPQMVKLHSFDTKIHKVDTLVSYKNDEWDEQ*

>Glyma11g37380.3   sequence type=predicted peptide   gene model=Glyma11g37380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLLTEESFVKVKKYGLPMLLTEDEGVKTFLANLTAQLSEWLEAGKLQRVVLVIMSKATSEVLERWNFSIETDCEVVEKGVSREKSDKEIMREIQAIMRQIASSITYLPCLDEPCIFDVLAYTDKDVAVPFTWVESDPKLIANPQMVKLHSFDTKIHKVDTLVSYKNDEWDEQ*

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