Glyma11g37250 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma11g37250

Feature Type:	gene_model
Chromosome:	Gm11
Start:	38417940
stop:	38427204
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g37250

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G67550	AT	Annotation by Michelle Graham. TAIR10: urease \| chr1:25312842-25316911 FORWARD LENGTH=838	SoyBase	E_val: 0	ISS
GO:0006807	GO-bp	Annotation by Michelle Graham. GO Biological Process: nitrogen compound metabolic process	SoyBase	N/A	ISS
GO:0019627	GO-bp	Annotation by Michelle Graham. GO Biological Process: urea metabolic process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0009039	GO-mf	Annotation by Michelle Graham. GO Molecular Function: urease activity	SoyBase	N/A	ISS
GO:0016151	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nickel cation binding	SoyBase	N/A	ISS
GO:0016787	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity	SoyBase	N/A	ISS
GO:0016810	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	SoyBase	N/A	ISS
PTHR11647	Panther	AMINOHYDROLASE	JGI		ISS
PTHR11647:SF39	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00449	PFAM	Urease alpha-subunit, N-terminal domain	JGI		ISS
PF00547	PFAM	Urease, gamma subunit	JGI		ISS
PF00699	PFAM	Urease beta subunit	JGI		ISS
PF01979	PFAM	Amidohydrolase family	JGI		ISS
UniRef100_Q949H4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Leaf ubiquitous urease n=1 Tax=Glycine max RepID=Q949H4_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q949H4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Leaf ubiquitous urease n=1 Tax=Glycine max RepID=Q949H4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma11g37250

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma11g37250 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g248700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g37250

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma11g37250

Limit To All Plant Sequences

>Glyma11g37250.1   sequence type=CDS   gene model=Glyma11g37250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAACTGAGTCCAAGGGAGATCGAGAAACTAGACCTGCATAATGCAGGCTACCTTGCACAGAAACGCCTTGCTCGTGGTTTAAGGCTCAATTATGTTGAAACTGTGGCTCTCATAGCAACACAGATTTTGGAATTTGTTCGTGATGGTGAAAAGACTGTTGCACAGCTAATGTGCATTGGGAGAGAACTTCTGGGAAGGAAACAAGTTCTTCCAGCTGTTCCTCATCTTGTTGAAAGTGTTCAGGTTGAAGCCACCTTTCGAGATGGTACTAAGTTAGTCACCATTCATGACCTATTTGCTTGCGAGAATGGAAACCTTGAACTAGCATTATTTGGTTCTTTTCTTCCAGTACCTTCACTTGACAAGTTTACAGAGAACGAAGAAGATCATAGAACTCCAGGTGAAATCATATGTAGAAGTGAAAATCTGATTCTTAACCCCAGAAGGAATGCAATAATTCTCAGAGTTGTCAACAAGGGAGACAGACCAATTCAGGTTGGCAGCCACTATCATTTTATTGAAGTAAATCCTTATTTAACCTTTGATCGAAGGAAAGCATATGGCATGCGCCTCAATATAGCTGCTGGGAATGCCACACGCTTTGAGCCAGGGGAATGTAAAAGCGTTGTGCTTGTAAGCATTGGAGGTAACAAAGTCATCAGAGGAGGTAATAACATTGCCGATGGTCCAGTTAATGATTCTAATTGCAGAGCAGCCATGAAAGCTGTGGTCACAAGGGGATTTGGACATGTGGAAGAGGAAAATGCTAGGGAAGGTGTTACTGGAGAAGACTATTCATTAACTACAGTAATTTCTCGAGAGGAATATGCTCACAAGTATGGCCCTACAACTGGTGACAAAATCCGTCTTGGTGATACTGACTTGTTTGCTGAAATTGAAAAAGATTTTGCTGTCTATGGTGATGAATGTGTTTTTGGAGGTGGGAAAGTCATAAGAGACGGAATGGGTCAATCAAGTGGCCATCCACCTGAGGGCTCCTTGGATACTGTTATAACAAATGCTGTGATCATTGATTATACTGGAATTATCAAAGCAGATATCGGTATTAAAGATGGACTGATCATCTCAACAGGAAAAGCAGGAAATCCAGACATTATGAATGATGTATTTCCTAATATGATAATTGGGGCTAATACCGAAGTTATTGCTGGAGAGGGCTTGATTGTGACAGCTGGGGCTATAGATTGTCATGTGCATTTTATATGTCCTCAATTAGTATATGATGCCGTAACAAGTGGTATCACAACATTAGTGGGAGGAGGAACAGGACCAGCTGATGGAACACGTGCTACAACTTGTACACCAGCACCAAATCAGATGAAATTGATGCTACAATCAACAGATGACATGCCTTTAAACTTTGGTTTCACTGGAAAAGGGAATAGTGCCAAACCTGATGAACTGCATGAAATAATCAGGGCTGGAGCTATGGGACTGAAGCTGCATGAGGACTGGGGAACTACACCGGCTGCAATAGACAGTTGTTTGACAGTTGCAGACCAATATGATATCCAGGTTAACATACATACTGACACCTTAAACGAATCTGGATTTGTTGAACATACAATTGCTGCATTTAAAGGAAGAACTATTCATACTTACCACAGTGAAGGAGCTGGTGGTGGCCATGCTCCAGATATCATAAAAGTATGTGGTGAGAAGAATGTCCTACCCTCATCAACAAATCCCACACGTCCTTATACACATAATACCATAGATGAGCATCTCGACATGTTGATGGTCTGCCATCATCTTAATAAGAATATTCCAGAAGATGTAGCTTTTGCTGAATCAAGAATAAGAGCTGAAACAATTGCTGCTGAAGATATTTTACATGACAAGGGGGCAATTAGCATTATATCATCTGATTCACAGGCTATGGGTCGAATTGGAGAGGTGATAAGCAGAACCTGGCAAACTGCTGATAAGATGAAGTCACAAAGAGGACCACTGCAGCCTGGTGAAGACAATGACAACTTTCGGATCAAGCGTTATGTTGCAAAGTATACCATAAATCCAGCTATAGCGAATGGTTTGTCGCAATATGTTGGTTCAGTTGAGGCGGGTAAGTTGGCTGATCTTGTATTATGGAAGCCGTCATTTTTTGGAGCAAAACCAGAAATGGTGATCAAAGGTGGTGAGGTTGCATATGCTAACATGGGTGACCCAAATGCAAGCATCCCAACACCTGAACCGGTGATTATGAGGCCTATGTTCGGAGCATTTGGCAAGGCTGGTAGTTCACACTCCATTGCTTTTGTGAGCAAGGCAGCTTTGGACGAAGGGGTGAAAGCTTCATATGGACTTAACAAGAGGGTGGAAGCTGTGAAGAATGTGAGGAAGCTCACCAAACGAGACATGAAACTGAATGACACTCTTCCACAAATCACTGTGGACCCAGAAACATACACAGTTACAGCAGATGGAGAGGTTCTCACCTGCACCGCAGCCAAGACTGTTCCTCTTTCCCGAAATTACTTCCTCTTTTAA

Predicted protein sequences of Glyma11g37250

Limit To All Plant Sequences

>Glyma11g37250.1   sequence type=predicted peptide   gene model=Glyma11g37250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKLSPREIEKLDLHNAGYLAQKRLARGLRLNYVETVALIATQILEFVRDGEKTVAQLMCIGRELLGRKQVLPAVPHLVESVQVEATFRDGTKLVTIHDLFACENGNLELALFGSFLPVPSLDKFTENEEDHRTPGEIICRSENLILNPRRNAIILRVVNKGDRPIQVGSHYHFIEVNPYLTFDRRKAYGMRLNIAAGNATRFEPGECKSVVLVSIGGNKVIRGGNNIADGPVNDSNCRAAMKAVVTRGFGHVEEENAREGVTGEDYSLTTVISREEYAHKYGPTTGDKIRLGDTDLFAEIEKDFAVYGDECVFGGGKVIRDGMGQSSGHPPEGSLDTVITNAVIIDYTGIIKADIGIKDGLIISTGKAGNPDIMNDVFPNMIIGANTEVIAGEGLIVTAGAIDCHVHFICPQLVYDAVTSGITTLVGGGTGPADGTRATTCTPAPNQMKLMLQSTDDMPLNFGFTGKGNSAKPDELHEIIRAGAMGLKLHEDWGTTPAAIDSCLTVADQYDIQVNIHTDTLNESGFVEHTIAAFKGRTIHTYHSEGAGGGHAPDIIKVCGEKNVLPSSTNPTRPYTHNTIDEHLDMLMVCHHLNKNIPEDVAFAESRIRAETIAAEDILHDKGAISIISSDSQAMGRIGEVISRTWQTADKMKSQRGPLQPGEDNDNFRIKRYVAKYTINPAIANGLSQYVGSVEAGKLADLVLWKPSFFGAKPEMVIKGGEVAYANMGDPNASIPTPEPVIMRPMFGAFGKAGSSHSIAFVSKAALDEGVKASYGLNKRVEAVKNVRKLTKRDMKLNDTLPQITVDPETYTVTADGEVLTCTAAKTVPLSRNYFLF*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain