SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G67550 | AT | Annotation by Michelle Graham. TAIR10: urease | chr1:25312842-25316911 FORWARD LENGTH=838 | SoyBase | E_val: 0 | ISS |
| GO:0006807 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nitrogen compound metabolic process | SoyBase | N/A | ISS |
| GO:0019627 | GO-bp | Annotation by Michelle Graham. GO Biological Process: urea metabolic process | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0009039 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: urease activity | SoyBase | N/A | ISS |
| GO:0016151 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nickel cation binding | SoyBase | N/A | ISS |
| GO:0016787 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity | SoyBase | N/A | ISS |
| GO:0016810 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds | SoyBase | N/A | ISS |
| PTHR11647 | Panther | AMINOHYDROLASE | JGI | ISS | |
| PTHR11647:SF39 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00449 | PFAM | Urease alpha-subunit, N-terminal domain | JGI | ISS | |
| PF00547 | PFAM | Urease, gamma subunit | JGI | ISS | |
| PF00699 | PFAM | Urease beta subunit | JGI | ISS | |
| PF01979 | PFAM | Amidohydrolase family | JGI | ISS | |
| UniRef100_Q949H4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Leaf ubiquitous urease n=1 Tax=Glycine max RepID=Q949H4_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q949H4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Leaf ubiquitous urease n=1 Tax=Glycine max RepID=Q949H4_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma11g37250 not represented in the dataset |
Glyma11g37250 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g248700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g37250.1 sequence type=CDS gene model=Glyma11g37250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAACTGAGTCCAAGGGAGATCGAGAAACTAGACCTGCATAATGCAGGCTACCTTGCACAGAAACGCCTTGCTCGTGGTTTAAGGCTCAATTATGTTGAAACTGTGGCTCTCATAGCAACACAGATTTTGGAATTTGTTCGTGATGGTGAAAAGACTGTTGCACAGCTAATGTGCATTGGGAGAGAACTTCTGGGAAGGAAACAAGTTCTTCCAGCTGTTCCTCATCTTGTTGAAAGTGTTCAGGTTGAAGCCACCTTTCGAGATGGTACTAAGTTAGTCACCATTCATGACCTATTTGCTTGCGAGAATGGAAACCTTGAACTAGCATTATTTGGTTCTTTTCTTCCAGTACCTTCACTTGACAAGTTTACAGAGAACGAAGAAGATCATAGAACTCCAGGTGAAATCATATGTAGAAGTGAAAATCTGATTCTTAACCCCAGAAGGAATGCAATAATTCTCAGAGTTGTCAACAAGGGAGACAGACCAATTCAGGTTGGCAGCCACTATCATTTTATTGAAGTAAATCCTTATTTAACCTTTGATCGAAGGAAAGCATATGGCATGCGCCTCAATATAGCTGCTGGGAATGCCACACGCTTTGAGCCAGGGGAATGTAAAAGCGTTGTGCTTGTAAGCATTGGAGGTAACAAAGTCATCAGAGGAGGTAATAACATTGCCGATGGTCCAGTTAATGATTCTAATTGCAGAGCAGCCATGAAAGCTGTGGTCACAAGGGGATTTGGACATGTGGAAGAGGAAAATGCTAGGGAAGGTGTTACTGGAGAAGACTATTCATTAACTACAGTAATTTCTCGAGAGGAATATGCTCACAAGTATGGCCCTACAACTGGTGACAAAATCCGTCTTGGTGATACTGACTTGTTTGCTGAAATTGAAAAAGATTTTGCTGTCTATGGTGATGAATGTGTTTTTGGAGGTGGGAAAGTCATAAGAGACGGAATGGGTCAATCAAGTGGCCATCCACCTGAGGGCTCCTTGGATACTGTTATAACAAATGCTGTGATCATTGATTATACTGGAATTATCAAAGCAGATATCGGTATTAAAGATGGACTGATCATCTCAACAGGAAAAGCAGGAAATCCAGACATTATGAATGATGTATTTCCTAATATGATAATTGGGGCTAATACCGAAGTTATTGCTGGAGAGGGCTTGATTGTGACAGCTGGGGCTATAGATTGTCATGTGCATTTTATATGTCCTCAATTAGTATATGATGCCGTAACAAGTGGTATCACAACATTAGTGGGAGGAGGAACAGGACCAGCTGATGGAACACGTGCTACAACTTGTACACCAGCACCAAATCAGATGAAATTGATGCTACAATCAACAGATGACATGCCTTTAAACTTTGGTTTCACTGGAAAAGGGAATAGTGCCAAACCTGATGAACTGCATGAAATAATCAGGGCTGGAGCTATGGGACTGAAGCTGCATGAGGACTGGGGAACTACACCGGCTGCAATAGACAGTTGTTTGACAGTTGCAGACCAATATGATATCCAGGTTAACATACATACTGACACCTTAAACGAATCTGGATTTGTTGAACATACAATTGCTGCATTTAAAGGAAGAACTATTCATACTTACCACAGTGAAGGAGCTGGTGGTGGCCATGCTCCAGATATCATAAAAGTATGTGGTGAGAAGAATGTCCTACCCTCATCAACAAATCCCACACGTCCTTATACACATAATACCATAGATGAGCATCTCGACATGTTGATGGTCTGCCATCATCTTAATAAGAATATTCCAGAAGATGTAGCTTTTGCTGAATCAAGAATAAGAGCTGAAACAATTGCTGCTGAAGATATTTTACATGACAAGGGGGCAATTAGCATTATATCATCTGATTCACAGGCTATGGGTCGAATTGGAGAGGTGATAAGCAGAACCTGGCAAACTGCTGATAAGATGAAGTCACAAAGAGGACCACTGCAGCCTGGTGAAGACAATGACAACTTTCGGATCAAGCGTTATGTTGCAAAGTATACCATAAATCCAGCTATAGCGAATGGTTTGTCGCAATATGTTGGTTCAGTTGAGGCGGGTAAGTTGGCTGATCTTGTATTATGGAAGCCGTCATTTTTTGGAGCAAAACCAGAAATGGTGATCAAAGGTGGTGAGGTTGCATATGCTAACATGGGTGACCCAAATGCAAGCATCCCAACACCTGAACCGGTGATTATGAGGCCTATGTTCGGAGCATTTGGCAAGGCTGGTAGTTCACACTCCATTGCTTTTGTGAGCAAGGCAGCTTTGGACGAAGGGGTGAAAGCTTCATATGGACTTAACAAGAGGGTGGAAGCTGTGAAGAATGTGAGGAAGCTCACCAAACGAGACATGAAACTGAATGACACTCTTCCACAAATCACTGTGGACCCAGAAACATACACAGTTACAGCAGATGGAGAGGTTCTCACCTGCACCGCAGCCAAGACTGTTCCTCTTTCCCGAAATTACTTCCTCTTTTAA
>Glyma11g37250.1 sequence type=predicted peptide gene model=Glyma11g37250 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKLSPREIEKLDLHNAGYLAQKRLARGLRLNYVETVALIATQILEFVRDGEKTVAQLMCIGRELLGRKQVLPAVPHLVESVQVEATFRDGTKLVTIHDLFACENGNLELALFGSFLPVPSLDKFTENEEDHRTPGEIICRSENLILNPRRNAIILRVVNKGDRPIQVGSHYHFIEVNPYLTFDRRKAYGMRLNIAAGNATRFEPGECKSVVLVSIGGNKVIRGGNNIADGPVNDSNCRAAMKAVVTRGFGHVEEENAREGVTGEDYSLTTVISREEYAHKYGPTTGDKIRLGDTDLFAEIEKDFAVYGDECVFGGGKVIRDGMGQSSGHPPEGSLDTVITNAVIIDYTGIIKADIGIKDGLIISTGKAGNPDIMNDVFPNMIIGANTEVIAGEGLIVTAGAIDCHVHFICPQLVYDAVTSGITTLVGGGTGPADGTRATTCTPAPNQMKLMLQSTDDMPLNFGFTGKGNSAKPDELHEIIRAGAMGLKLHEDWGTTPAAIDSCLTVADQYDIQVNIHTDTLNESGFVEHTIAAFKGRTIHTYHSEGAGGGHAPDIIKVCGEKNVLPSSTNPTRPYTHNTIDEHLDMLMVCHHLNKNIPEDVAFAESRIRAETIAAEDILHDKGAISIISSDSQAMGRIGEVISRTWQTADKMKSQRGPLQPGEDNDNFRIKRYVAKYTINPAIANGLSQYVGSVEAGKLADLVLWKPSFFGAKPEMVIKGGEVAYANMGDPNASIPTPEPVIMRPMFGAFGKAGSSHSIAFVSKAALDEGVKASYGLNKRVEAVKNVRKLTKRDMKLNDTLPQITVDPETYTVTADGEVLTCTAAKTVPLSRNYFLF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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