SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G67370 | AT | Annotation by Michelle Graham. TAIR10: DNA-binding HORMA family protein | chr1:25239347-25243713 REVERSE LENGTH=596 | SoyBase | E_val: 0 | ISS |
| GO:0006302 | GO-bp | Annotation by Michelle Graham. GO Biological Process: double-strand break repair | SoyBase | N/A | ISS |
| GO:0007062 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sister chromatid cohesion | SoyBase | N/A | ISS |
| GO:0007129 | GO-bp | Annotation by Michelle Graham. GO Biological Process: synapsis | SoyBase | N/A | ISS |
| GO:0007130 | GO-bp | Annotation by Michelle Graham. GO Biological Process: synaptonemal complex assembly | SoyBase | N/A | ISS |
| GO:0007131 | GO-bp | Annotation by Michelle Graham. GO Biological Process: reciprocal meiotic recombination | SoyBase | N/A | ISS |
| GO:0010212 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to ionizing radiation | SoyBase | N/A | ISS |
| GO:0010332 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to gamma radiation | SoyBase | N/A | ISS |
| GO:0032204 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of telomere maintenance | SoyBase | N/A | ISS |
| GO:0032504 | GO-bp | Annotation by Michelle Graham. GO Biological Process: multicellular organism reproduction | SoyBase | N/A | ISS |
| GO:0042138 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meiotic DNA double-strand break formation | SoyBase | N/A | ISS |
| GO:0043247 | GO-bp | Annotation by Michelle Graham. GO Biological Process: telomere maintenance in response to DNA damage | SoyBase | N/A | ISS |
| GO:0045132 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meiotic chromosome segregation | SoyBase | N/A | ISS |
| GO:0051026 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chiasma assembly | SoyBase | N/A | ISS |
| GO:0000785 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chromatin | SoyBase | N/A | ISS |
| GO:0000794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: condensed nuclear chromosome | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005654 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleoplasm | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| KOG4652 | KOG | HORMA domain | JGI | ISS | |
| PTHR21518 | Panther | MEIOSIS SPECIFIC PROTEIN HOP1 | JGI | ISS | |
| PF02301 | PFAM | HORMA domain | JGI | ISS | |
| UniRef100_G7JBZ6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: HORMA domain-containing protein n=1 Tax=Medicago truncatula RepID=G7JBZ6_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233D278 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233D278 related cluster n=1 Tax=unknown RepID=UPI000233D278 | SoyBase | E_val: 0 | ISS |
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Glyma11g37091 not represented in the dataset |
Glyma11g37091 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma18g01010 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g250400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g37091.2 sequence type=transcript gene model=Glyma11g37091 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GTGCATTGTGGCCTATAAATATCACTCCCCTACCGCCACATTCCTCATTCAAATTTTCTTATAACGAAGTGAATCGCACTCTTCTCTCACTTTGAGTTTGCGACTCTGGAATTCTGCTACCATGGTCGTTGCACAGAAAGTTAAGGAAGCTGAAATCACCGAGCAGGATTCACTTCTTCTCACGAGGATCCTGCTCCGAATTGCCATATTCAACATCAGTTATATCAGAGGACTATTTCCTGAGAAGTATTTCAATGATAAGTCTGTTCCCGCGTTAGAGATGAAGATAAAAAAACTTATGCCGGTGGATGCTGAGTCTCGCAGATTGATTGATTGGATGGAGAAAGGTGTATACGACGCCTTACAGAAGAAATACCTGAAGACGCTTCTGTTCTGTGTGTGCGAAGCAGTGGACGGACCGATGCTTGAGGAATATGCATTTTCATTTAGCTATTCAGATTCTGATAATCAAGAGGTGTCGATGAATATCAACCGCACTGGAAACAAAAAGAACCGGGGGACCTTCAAGTGTAATTCGACTACAGAAGTTACTCCCCATCAGATGAGGAGTTCTGCGTGTAAGATGATCCGAACTCTCGTTCAGTTGATGAGAACTCTGGAGAAAATGCCAGAAGAGCGCACTATTATGATGAAGCTCCTCTACTATGATGATGTGACGCCAGCTGATTATGAGCCTCCTTTCTTCAAGGGATGCACTGATGAAGAAACTTATCATCCATGGGAGAAGAATCCATTGAAAATGGAGGTTGGGAATGTAAACAGCAAGCACTTTGTGTTAGCTCTGAAGGTGAAGAGTGTGCTCGACCCTTGTGAGGATGATAATGAGGGAGTCCAAGACGATTTCAGCGCTGGAGATGATTCCATGCAACAGAATGAATATTATGATACTGACAGTGAGGTTTATCTTACTCAAGGGAATCGATATATAGTTGCTCCAATAGACAATACCCAGGACCCGGTGGATGATGAGCAACAACTGGTCCGGGTCAAGGAGTGGATCAACTGTTGTCACCGTGACACTATCGAGTTTAATGATGTTCTATCGAATTTTCCAGACATCTCCGTGGTTCTATCCGAAGAGATCACAGACAAGCTTGTTGAGGAAGGTGTGCTATCAAAGATAGGGAAGGAAACCTACGCCATTAACAAGGACAAGAACCTTGAATATGAGTTCGCCATTGTGAAGGAAGAAATTGACGGTCAAATTCCTCAAGTCTTTGACAGAGCTTTGCAGGTTGAAGATCGCATATACATGAAAGCTCTCTATCATGTTCTTCCGATGACACACGTTTCAGTCACTAAGCTTCAAAGCTTGCTTGAGGGAGAAGTAAACCAGATAGCAGCACGAAAGATCCTAGATAAAATGGTGCGGGATGGAATTATTGAACCCAAAGGCAGCAAAAGATTAGGGAAACGTGTTATCCATTCTGACTTAACTGAAAGGAAATTCATTGAAGTCCAGAAAGCTCTAAGTGCTACTACTGAAGCAATGGATGTTGATCACTGTGAACCAAATAGCAAGTCCAAAAAAACTGGTTTCCGTTTAAATGGAAGCAACTATGACGTGTCTACATATGGGGTTCTCCACTCTATTGGATCAGATTTAACACGAATGAAAGTGACATCTGAGACAAACTATAGTGACTCCGGGAATGGACAGAAAGCATCAAAGGCAAAAGAGCCCGGGAACACCCCCATAAGCAGGCCAGTTATTTCAAGAGAGAGTTTTGCGCAAGGCAAAGAGAACGGAAGAACAAATGGAATAGCAAATCAAGGGGACGAAGCTGACACAATCATATGCAGCAAGTCTTCCCAAGACAAACGACCAAGGAAAACTAGCGCGGCGAAGGAGCCTATCCATCAAAACATGAAGCGACAGAGATCTGAGGCTCAGTGA
>Glyma11g37091.1 sequence type=CDS gene model=Glyma11g37091 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTCGTTGCACAGAAAGTTAAGGAAGCTGAAATCACCGAGCAGGATTCACTTCTTCTCGTACTTAACCTTCGTTCTGCTTCATGCATTTCTTATATTACTCATTTTTCTTCAATCACGAGGATCCTGCTCCGAATTGCCATATTCAACATCAGTTATATCAGAGGACTATTTCCTGAGAAGTATTTCAATGATAAGTCTGTTCCCGCGTTAGAGATGAAGATAAAAAAACTTATGCCGGTGGATGCTGAGTCTCGCAGATTGATTGATTGGATGGAGAAAGGTGTATACGACGCCTTACAGAAGAAATACCTGAAGACGCTTCTGTTCTGTGTGTGCGAAGCAGTGGACGGACCGATGCTTGAGGAATATGCATTTTCATTTAGCTATTCAGATTCTGATAATCAAGAGGTGTCGATGAATATCAACCGCACTGGAAACAAAAAGAACCGGGGGACCTTCAAGTGTAATTCGACTACAGAAGTTACTCCCCATCAGATGAGGAGTTCTGCGTGTAAGATGATCCGAACTCTCGTTCAGTTGATGAGAACTCTGGAGAAAATGCCAGAAGAGCGCACTATTATGATGAAGCTCCTCTACTATGATGATGTGACGCCAGCTGATTATGAGCCTCCTTTCTTCAAGGGATGCACTGATGAAGAAACTTATCATCCATGGGAGAAGAATCCATTGAAAATGGAGGTTGGGAATGTAAACAGCAAGCACTTTGTGTTAGCTCTGAAGGTGAAGAGTGTGCTCGACCCTTGTGAGGATGATAATGAGGGAGTCCAAGACGATTTCAGCGCTGGAGATGATTCCATGCAACAGAATGAATATTATGATACTGACAGTGAGGTTTATCTTACTCAAGGGAATCGATATATAGTTGCTCCAATAGACAATACCCAGGACCCGGTGGATGATGAGCAACAACTGGTCCGGGTCAAGGAGTGGATCAACTGTTGTCACCGTGACACTATCGAGTTTAATGATGTTCTATCGAATTTTCCAGACATCTCCGTGGTTCTATCCGAAGAGATCACAGACAAGCTTGTTGAGGAAGGTGTGCTATCAAAGATAGGGAAGGAAACCTACGCCATTAACAAGGACAAGAACCTTGAATATGAGTTCGCCATTGTGAAGGAAGAAATTGACGGTCAAATTCCTCAAGTCTTTGACAGAGCTTTGCAGGTTGAAGATCGCATATACATGAAAGCTCTCTATCATGTTCTTCCGATGACACACGTTTCAGTCACTAAGCTTCAAAGCTTGCTTGAGGGAGAAGTAAACCAGATAGCAGCACGAAAGATCCTAGATAAAATGGTGCGGGATGGAATTATTGAACCCAAAGGCAGCAAAAGATTAGGGAAACGTGTTATCCATTCTGACTTAACTGAAAGGAAATTCATTGAAGTCCAGAAAGCTCTAAGTGCTACTACTGAAGCAATGGATGTTGATCACTGTGAACCAAATAGCAAGTCCAAAAAAACTGGTTTCCGTTTAAATGGAAGCAACTATGACGTGTCTACATATGGGGTTCTCCACTCTATTGGATCAGATTTAACACGAATGAAAGTGACATCTGAGACAAACTATAGTGACTCCGGGAATGGACAGAAAGCATCAAAGGCAAAAGAGCCCGGGAACACCCCCATAAGCAGGCCAGTTATTTCAAGAGAGAGTTTTGCGCAAGGCAAAGAGAACGGAAGAACAAATGGAATAGCAAATCAAGGGGACGAAGCTGACACAATCATATGCAGCAAGTCTTCCCAAGACAAACGACCAAGGAAAACTAGCGCGGCGAAGGAGCCTATCCATCAAAACATGAAGCGACAGAGATCTGAGGCTCAGTGA >Glyma11g37091.2 sequence type=CDS gene model=Glyma11g37091 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTCGTTGCACAGAAAGTTAAGGAAGCTGAAATCACCGAGCAGGATTCACTTCTTCTCACGAGGATCCTGCTCCGAATTGCCATATTCAACATCAGTTATATCAGAGGACTATTTCCTGAGAAGTATTTCAATGATAAGTCTGTTCCCGCGTTAGAGATGAAGATAAAAAAACTTATGCCGGTGGATGCTGAGTCTCGCAGATTGATTGATTGGATGGAGAAAGGTGTATACGACGCCTTACAGAAGAAATACCTGAAGACGCTTCTGTTCTGTGTGTGCGAAGCAGTGGACGGACCGATGCTTGAGGAATATGCATTTTCATTTAGCTATTCAGATTCTGATAATCAAGAGGTGTCGATGAATATCAACCGCACTGGAAACAAAAAGAACCGGGGGACCTTCAAGTGTAATTCGACTACAGAAGTTACTCCCCATCAGATGAGGAGTTCTGCGTGTAAGATGATCCGAACTCTCGTTCAGTTGATGAGAACTCTGGAGAAAATGCCAGAAGAGCGCACTATTATGATGAAGCTCCTCTACTATGATGATGTGACGCCAGCTGATTATGAGCCTCCTTTCTTCAAGGGATGCACTGATGAAGAAACTTATCATCCATGGGAGAAGAATCCATTGAAAATGGAGGTTGGGAATGTAAACAGCAAGCACTTTGTGTTAGCTCTGAAGGTGAAGAGTGTGCTCGACCCTTGTGAGGATGATAATGAGGGAGTCCAAGACGATTTCAGCGCTGGAGATGATTCCATGCAACAGAATGAATATTATGATACTGACAGTGAGGTTTATCTTACTCAAGGGAATCGATATATAGTTGCTCCAATAGACAATACCCAGGACCCGGTGGATGATGAGCAACAACTGGTCCGGGTCAAGGAGTGGATCAACTGTTGTCACCGTGACACTATCGAGTTTAATGATGTTCTATCGAATTTTCCAGACATCTCCGTGGTTCTATCCGAAGAGATCACAGACAAGCTTGTTGAGGAAGGTGTGCTATCAAAGATAGGGAAGGAAACCTACGCCATTAACAAGGACAAGAACCTTGAATATGAGTTCGCCATTGTGAAGGAAGAAATTGACGGTCAAATTCCTCAAGTCTTTGACAGAGCTTTGCAGGTTGAAGATCGCATATACATGAAAGCTCTCTATCATGTTCTTCCGATGACACACGTTTCAGTCACTAAGCTTCAAAGCTTGCTTGAGGGAGAAGTAAACCAGATAGCAGCACGAAAGATCCTAGATAAAATGGTGCGGGATGGAATTATTGAACCCAAAGGCAGCAAAAGATTAGGGAAACGTGTTATCCATTCTGACTTAACTGAAAGGAAATTCATTGAAGTCCAGAAAGCTCTAAGTGCTACTACTGAAGCAATGGATGTTGATCACTGTGAACCAAATAGCAAGTCCAAAAAAACTGGTTTCCGTTTAAATGGAAGCAACTATGACGTGTCTACATATGGGGTTCTCCACTCTATTGGATCAGATTTAACACGAATGAAAGTGACATCTGAGACAAACTATAGTGACTCCGGGAATGGACAGAAAGCATCAAAGGCAAAAGAGCCCGGGAACACCCCCATAAGCAGGCCAGTTATTTCAAGAGAGAGTTTTGCGCAAGGCAAAGAGAACGGAAGAACAAATGGAATAGCAAATCAAGGGGACGAAGCTGACACAATCATATGCAGCAAGTCTTCCCAAGACAAACGACCAAGGAAAACTAGCGCGGCGAAGGAGCCTATCCATCAAAACATGAAGCGACAGAGATCTGAGGCTCAGTGA
>Glyma11g37091.1 sequence type=predicted peptide gene model=Glyma11g37091 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVVAQKVKEAEITEQDSLLLVLNLRSASCISYITHFSSITRILLRIAIFNISYIRGLFPEKYFNDKSVPALEMKIKKLMPVDAESRRLIDWMEKGVYDALQKKYLKTLLFCVCEAVDGPMLEEYAFSFSYSDSDNQEVSMNINRTGNKKNRGTFKCNSTTEVTPHQMRSSACKMIRTLVQLMRTLEKMPEERTIMMKLLYYDDVTPADYEPPFFKGCTDEETYHPWEKNPLKMEVGNVNSKHFVLALKVKSVLDPCEDDNEGVQDDFSAGDDSMQQNEYYDTDSEVYLTQGNRYIVAPIDNTQDPVDDEQQLVRVKEWINCCHRDTIEFNDVLSNFPDISVVLSEEITDKLVEEGVLSKIGKETYAINKDKNLEYEFAIVKEEIDGQIPQVFDRALQVEDRIYMKALYHVLPMTHVSVTKLQSLLEGEVNQIAARKILDKMVRDGIIEPKGSKRLGKRVIHSDLTERKFIEVQKALSATTEAMDVDHCEPNSKSKKTGFRLNGSNYDVSTYGVLHSIGSDLTRMKVTSETNYSDSGNGQKASKAKEPGNTPISRPVISRESFAQGKENGRTNGIANQGDEADTIICSKSSQDKRPRKTSAAKEPIHQNMKRQRSEAQ* >Glyma11g37091.2 sequence type=predicted peptide gene model=Glyma11g37091 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVVAQKVKEAEITEQDSLLLTRILLRIAIFNISYIRGLFPEKYFNDKSVPALEMKIKKLMPVDAESRRLIDWMEKGVYDALQKKYLKTLLFCVCEAVDGPMLEEYAFSFSYSDSDNQEVSMNINRTGNKKNRGTFKCNSTTEVTPHQMRSSACKMIRTLVQLMRTLEKMPEERTIMMKLLYYDDVTPADYEPPFFKGCTDEETYHPWEKNPLKMEVGNVNSKHFVLALKVKSVLDPCEDDNEGVQDDFSAGDDSMQQNEYYDTDSEVYLTQGNRYIVAPIDNTQDPVDDEQQLVRVKEWINCCHRDTIEFNDVLSNFPDISVVLSEEITDKLVEEGVLSKIGKETYAINKDKNLEYEFAIVKEEIDGQIPQVFDRALQVEDRIYMKALYHVLPMTHVSVTKLQSLLEGEVNQIAARKILDKMVRDGIIEPKGSKRLGKRVIHSDLTERKFIEVQKALSATTEAMDVDHCEPNSKSKKTGFRLNGSNYDVSTYGVLHSIGSDLTRMKVTSETNYSDSGNGQKASKAKEPGNTPISRPVISRESFAQGKENGRTNGIANQGDEADTIICSKSSQDKRPRKTSAAKEPIHQNMKRQRSEAQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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