Glyma11g36990 - SoyBase

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Report for Sequence Feature Glyma11g36990

Feature Type:	gene_model
Chromosome:	Gm11
Start:	38252838
stop:	38257478
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g36990

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G67325	AT	Annotation by Michelle Graham. TAIR10: Ran BP2/NZF zinc finger-like superfamily protein \| chr1:25209825-25212412 REVERSE LENGTH=287	SoyBase	E_val: 9.00E-143	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PTHR23111	Panther	ZINC FINGER PROTEIN	JGI		ISS
PF00641	PFAM	Zn-finger in Ran binding protein and others	JGI		ISS
UniRef100_G7JBG4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: RanBP2-type zinc finger protein n=1 Tax=Medicago truncatula RepID=G7JBG4_MEDTR	SoyBase	E_val: 1.00E-176	ISS
UniRef100_I1LN72	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LN72_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma11g36990

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g36990

Paralog	Evidence	Comments
Glyma18g00920	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g36990 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g251300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g36990

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma11g36990

Limit To All Plant Sequences

>Glyma11g36990.3   sequence type=transcript   gene model=Glyma11g36990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTTAAAATAAATGTATATGTATACTAGATTCGTGTTATTTGGGGATCGTTATTGTGTTGCTTATTCTTTTTTCCACAACCTTGAATGTTTACCGCCCCGCCGGATAAGGAGAAGGAGAAGGAGGATCTGCGTCGCAGGCACTGTTCATCGCCATGTCTCGGGTTGATAACAGAAATTCCTCAGCCACCAAGCGTGCTAGGACTGATGGTAGTCGTAGGGAAGATGATTGGACATGCCCCAGCTGTGGCAATGTCAATTTCTCTTTCAGGACAACTTGTAACATGCGTAATTGCACTCAACCAAGGCCGGCTGATCATAATTCGAAATCTGCTGCCAAGCCTCTACAAGCTCCGCAGGGTTATTCATCCTCAGCTCCTTATTTAGGTTCTAATACCCCCTCTTCAATATATCTTGGTGTTCCACCATATGGATCTTCTCTGTTCAATGGATCATCTGTTCCTCCCTATGATGTTCCATTTTCTGGAGGATCAGCATATCACTACAATTATGGTAGTCGCCTTTCTGCTGGCAGTCCTTATAGACCATTGCATTTATCTGGACCAACACCCTACACAGGTGGACCAGTGATTGGAAATGGTGGGATATATGGAATGCCCCAACTGTTGGATCGGTATGGCCTGGGCATCCCTATCGGACCTGGGACAATGGGTGCTAGGCCTGGATTTTTTCACGATGACAAGTCACAGAAAAAAGATGCAACTCGTGACAATGACTGGACATGTCCAAAATGTGGCAATGTCAATTTTTCATTCAGAACTGTCTGCAACATGAGAAAGTGCAACACACCCAAACCTGGATCACAGGCCTCAAAGTCGGACAAAAATTCTAGTAAGTAGCTTCCCAGGCTCCCCCATGATACCATCTGTGATCTGTCTCATAATTCATGTCTTTTACCTAATACAAAAGCAACAGTTGGTAATTATGTTTCTTTGTTTTTATTTTTCCATTCAGAGCAAAAGATGCCTGAGGGAAGCTGGAAGTGCGAAAAGTGTAACAACATAAACTATCCTTTCAGAACCAAGTGCAACAGACAGAATTGTGGTGCTGACAAGCCGGCTGAGTCTGAAGAATCTCCTTCATCAGCTGCAGATCAAAATGATCAGTGAGTACTAGGACATGTTTGAGGGTTGAGAAGGTCCAGAGTTGTCATCAAGCATTGCTCAGTCTGGGTGTCTGACAGTCAGTCTTGTCGTCTTCTATGTTGCAGCAGTTGTCAAGTCACTCACCTTCTCAATATGTGTCAAGTTGTTGTATTAACTGAGATGGTATTTTGGTCTTTGTGGATTGTTATGACGCATGTGTCAGCCAACTTTCCTGGTATAAAGGTTATTGCATGTTCCAGTTTTAAGTTTTCTTTTGGTTCTTGACTGTCTGTGTTTAAGTATAACTCTAGATAAATAGATGCCTTAAAAGAAAGTGAAGATTCTAAGTTTTTTAGATTTATTAGGTGACATTTTAGTTTTGGGTAGTTGAAAGTGTCTTCCTAACATACCACTTTTAGGATGTGCGCATCAGCATTACAAAAGCCATTCTCTTTCGTACTGTTGCTTGTAGCTACATGGATGTTTCATGTTGTGTCATTGAATTAAAGTTGACAGTAGATTATTTAGTTGATCATGGATTTTTTTTGTTTCATTTAGATATAAGCACTTCTTGCTGATAATAGGTTTTTGGGGTAGTCTTTTTAGGGTCATTACCTTGAGTGCTAATCTTGATGTTTCTGGTATCTAACTTGTTTCCCTGCCCGTCCACCATTGACAATACCTAAAGTTCAGAGTAAAATTTCTAAATGTGGATGTCAAGTGGGTATTTGTTGTGTCCTTTATAACTCGTTTCAATAGGCAACTTAGTTGGAATTGTTCTCTGCTAGCATAGCACTTGAATTTATGAAACTAGCATCACATTAGTCGTTCTTGTATCTTTTAGCTTAGACCCCAAGAATGACTAATTTGATATGGTTTTTGTAAATTTAAAGAATAGAATACATGAAAAAATTCAATGATCAGCTGCAGATGATTTCCCGGACAAACTTTGATGTCCATAAATATTAAGTATTCACTGGAGTGCAGCTCCGTATGAATTCGGACTATAAATCTAAGATTTGGTTCACTCTAAAGTGAGTAGAATGCACTTTAGAGGATAAAGTGCATAAATCTAATAAGCAGAGGATGATTGGGAAGAGAGATGAAGTTACTTGATATTGTAGTCCGAAGAAGCTTCCAATTTGCTCTGTTCTAGGAGTGCACGTTGGACTTAACTGATAAAGGTGGGCTTTCTTGACTAACAATTTGGGAGAAAGATTGTTATTCAGCACGAAAAATTAAGTGATTGGGCATTAATAATTAATGTATCGAAGTTAAGGTTGAATTGTTTGGGTACTATTTGAGTTTGATTCTTGCGAAAATAATTCTTAGTTAGATTTTATTTCCCTTCAGATGAATTCTGAATTAGCTAGAGTCTCTCTATCCTAGTGAAATGGAGGATTAAGAAAAAAAAAATAAATGCACAAAAAAATGTGCAAATCATCTGCTGAGTTGTTATTTTTAAAAAATTATATTAAAAAAACTGG

>Glyma11g36990.4   sequence type=transcript   gene model=Glyma11g36990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTTGGGGATCGTTATTGTGTTGCTTATTCTTTTTTCCACAACCTTGAATGTTTACCGCCCCGCCGGATAAGGAGAAGGAGAAGGAGGATCTGCGTCGCAGGCACTGTTCATCGCCATGTCTCGGGTTGATAACAGAAATTCCTCAGCCACCAAGCGTGCTAGGACTGATGGTAGTCGTAGGGAAGATGATTGGACATGCCCCAGCTGTGGCAATGTCAATTTCTCTTTCAGGACAACTTGTAACATGCGTAATTGCACTCAACCAAGGCCGGCTGATCATAATTCGAAATCTGCTGCCAAGCCTCTACAAGCTCCGCAGGGTTATTCATCCTCAGCTCCTTATTTAGGTTCTAATACCCCCTCTTCAATATATCTTGGTGTTCCACCATATGGATCTTCTCTGTTCAATGGATCATCTGTTCCTCCCTATGATGTTCCATTTTCTGGAGGATCAGCATATCACTACAATTATGGTAGTCGCCTTTCTGCTGGCAGTCCTTATAGACCATTGCATTTATCTGGACCAACACCCTACACAGGTGGACCAGTGATTGGAAATGGTGGGATATATGGAATGCCCCAACTGTTGGATCGGTATGGCCTGGGCATCCCTATCGGACCTGGGACAATGGGTGCTAGGCCTGGATTTTTTCACGATGACAAGTCACAGAAAAAAGATGCAACTCGTGACAATGACTGGACATGTCCAAAATGTGGCAATGTCAATTTTTCATTCAGAACTGTCTGCAACATGAGAAAGTGCAACACACCCAAACCTGGATCACAGGCCTCAAAGTCGGACAAAAATTCTAAGCAAAAGATGCCTGAGGGAAGCTGGAAGTGCGAAAAGTGTAACAACATAAACTATCCTTTCAGAACCAAGTGCAACAGACAGAATTGTGGTGCTGACAAGCCGGCTGAGTCTGAAGAATCTCCTTCATCAGCTGCAGATCAAAATGATCAGGTTTGTTGTGTAAAATATTTTCATGTTGACCTTCATTCCTTGTTGCTACAGTTGTTGGTTTTCCAAGAGCAGGTTTGTAACATAATGAACATTTTCATTTGGCAATCGGTTGTGAAGTTGTCTTTTAAGTGGATTCTAAGGAAAAGCTTCAGTTTTGCTTCCCTTCATTTGGAACCTTTTATCACCCCTTTTTAA

Coding sequences of Glyma11g36990

Limit To All Plant Sequences

>Glyma11g36990.2   sequence type=CDS   gene model=Glyma11g36990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTCGGGTTGATAACAGAAATTCCTCAGCCACCAAGCGTGCTAGGACTGATGGTAGTCGTAGGGAAGATGATTGGACATGCCCCAGCTGTGGCAATGTCAATTTCTCTTTCAGGACAACTTGTAACATGCGTAATTGCACTCAACCAAGGCCGGCTGATCATAATTCGAAATCTGCTGCCAAGCCTCTACAAGCTCCGCAGGGTTATTCATCCTCAGCTCCTTATTTAGGTTCTAATACCCCCTCTTCAATATATCTTGGTGTTCCACCATATGGATCTTCTCTGTTCAATGGATCATCTGTTCCTCCCTATGATGTTCCATTTTCTGGAGGATCAGCATATCACTACAATTATGGTAGTCGCCTTTCTGCTGGCAGTCCTTATAGACCATTGCATTTATCTGGACCAACACCCTACACAGGTGGACCAGTGATTGGAAATGGTGGGATATATGGAATGCCCCAACTGTTGGATCGGTATGGCCTGGGCATCCCTATCGGACCTGGGACAATGGGTGCTAGGCCTGGATTTTTTCACGATGACAAGTCACAGAAAAAAGATGCAACTCGTGACAATGACTGGACATGTCCAAAATGTGGCAATGTCAATTTTTCATTCAGAACTGTCTGCAACATGAGAAAGTGCAACACACCCAAACCTGGATCACAGGCCTCAAAGTCGGACAAAAATTCTAAGCAAAAGATGCCTGAGGGAAGCTGGAAGTGCGAAAAGTGTAACAACATAAACTATCCTTTCAGAACCAAGTGCAACAGACAGAATTGTGGTGCTGACAAGCCGGCTGAGTCTGAAGAATCTCCTTCATCAGCTGCAGATCAAAATGATCAGTGA

>Glyma11g36990.3   sequence type=CDS   gene model=Glyma11g36990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTCGGGTTGATAACAGAAATTCCTCAGCCACCAAGCGTGCTAGGACTGATGGTAGTCGTAGGGAAGATGATTGGACATGCCCCAGCTGTGGCAATGTCAATTTCTCTTTCAGGACAACTTGTAACATGCGTAATTGCACTCAACCAAGGCCGGCTGATCATAATTCGAAATCTGCTGCCAAGCCTCTACAAGCTCCGCAGGGTTATTCATCCTCAGCTCCTTATTTAGGTTCTAATACCCCCTCTTCAATATATCTTGGTGTTCCACCATATGGATCTTCTCTGTTCAATGGATCATCTGTTCCTCCCTATGATGTTCCATTTTCTGGAGGATCAGCATATCACTACAATTATGGTAGTCGCCTTTCTGCTGGCAGTCCTTATAGACCATTGCATTTATCTGGACCAACACCCTACACAGGTGGACCAGTGATTGGAAATGGTGGGATATATGGAATGCCCCAACTGTTGGATCGGTATGGCCTGGGCATCCCTATCGGACCTGGGACAATGGGTGCTAGGCCTGGATTTTTTCACGATGACAAGTCACAGAAAAAAGATGCAACTCGTGACAATGACTGGACATGTCCAAAATGTGGCAATGTCAATTTTTCATTCAGAACTGTCTGCAACATGAGAAAGTGCAACACACCCAAACCTGGATCACAGGCCTCAAAGTCGGACAAAAATTCTAGTAAGTAG

>Glyma11g36990.4   sequence type=CDS   gene model=Glyma11g36990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTCGGGTTGATAACAGAAATTCCTCAGCCACCAAGCGTGCTAGGACTGATGGTAGTCGTAGGGAAGATGATTGGACATGCCCCAGCTGTGGCAATGTCAATTTCTCTTTCAGGACAACTTGTAACATGCGTAATTGCACTCAACCAAGGCCGGCTGATCATAATTCGAAATCTGCTGCCAAGCCTCTACAAGCTCCGCAGGGTTATTCATCCTCAGCTCCTTATTTAGGTTCTAATACCCCCTCTTCAATATATCTTGGTGTTCCACCATATGGATCTTCTCTGTTCAATGGATCATCTGTTCCTCCCTATGATGTTCCATTTTCTGGAGGATCAGCATATCACTACAATTATGGTAGTCGCCTTTCTGCTGGCAGTCCTTATAGACCATTGCATTTATCTGGACCAACACCCTACACAGGTGGACCAGTGATTGGAAATGGTGGGATATATGGAATGCCCCAACTGTTGGATCGGTATGGCCTGGGCATCCCTATCGGACCTGGGACAATGGGTGCTAGGCCTGGATTTTTTCACGATGACAAGTCACAGAAAAAAGATGCAACTCGTGACAATGACTGGACATGTCCAAAATGTGGCAATGTCAATTTTTCATTCAGAACTGTCTGCAACATGAGAAAGTGCAACACACCCAAACCTGGATCACAGGCCTCAAAGTCGGACAAAAATTCTAAGCAAAAGATGCCTGAGGGAAGCTGGAAGTGCGAAAAGTGTAACAACATAAACTATCCTTTCAGAACCAAGTGCAACAGACAGAATTGTGGTGCTGACAAGCCGGCTGAGTCTGAAGAATCTCCTTCATCAGCTGCAGATCAAAATGATCAGGTTTGTTGTGTAAAATATTTTCATGTTGACCTTCATTCCTTGTTGCTACAGTTGTTGGTTTTCCAAGAGCAGGTTTGTAACATAATGAACATTTTCATTTGGCAATCGGTTGTGAAGTTGTCTTTTAAGTGGATTCTAAGGAAAAGCTTCAGTTTTGCTTCCCTTCATTTGGAACCTTTTATCACCCCTTTTTAA

Predicted protein sequences of Glyma11g36990

Limit To All Plant Sequences

>Glyma11g36990.2   sequence type=predicted peptide   gene model=Glyma11g36990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSRVDNRNSSATKRARTDGSRREDDWTCPSCGNVNFSFRTTCNMRNCTQPRPADHNSKSAAKPLQAPQGYSSSAPYLGSNTPSSIYLGVPPYGSSLFNGSSVPPYDVPFSGGSAYHYNYGSRLSAGSPYRPLHLSGPTPYTGGPVIGNGGIYGMPQLLDRYGLGIPIGPGTMGARPGFFHDDKSQKKDATRDNDWTCPKCGNVNFSFRTVCNMRKCNTPKPGSQASKSDKNSKQKMPEGSWKCEKCNNINYPFRTKCNRQNCGADKPAESEESPSSAADQNDQ*

>Glyma11g36990.3   sequence type=predicted peptide   gene model=Glyma11g36990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSRVDNRNSSATKRARTDGSRREDDWTCPSCGNVNFSFRTTCNMRNCTQPRPADHNSKSAAKPLQAPQGYSSSAPYLGSNTPSSIYLGVPPYGSSLFNGSSVPPYDVPFSGGSAYHYNYGSRLSAGSPYRPLHLSGPTPYTGGPVIGNGGIYGMPQLLDRYGLGIPIGPGTMGARPGFFHDDKSQKKDATRDNDWTCPKCGNVNFSFRTVCNMRKCNTPKPGSQASKSDKNSSK*

>Glyma11g36990.4   sequence type=predicted peptide   gene model=Glyma11g36990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSRVDNRNSSATKRARTDGSRREDDWTCPSCGNVNFSFRTTCNMRNCTQPRPADHNSKSAAKPLQAPQGYSSSAPYLGSNTPSSIYLGVPPYGSSLFNGSSVPPYDVPFSGGSAYHYNYGSRLSAGSPYRPLHLSGPTPYTGGPVIGNGGIYGMPQLLDRYGLGIPIGPGTMGARPGFFHDDKSQKKDATRDNDWTCPKCGNVNFSFRTVCNMRKCNTPKPGSQASKSDKNSKQKMPEGSWKCEKCNNINYPFRTKCNRQNCGADKPAESEESPSSAADQNDQVCCVKYFHVDLHSLLLQLLVFQEQVCNIMNIFIWQSVVKLSFKWILRKSFSFASLHLEPFITPF*

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