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Report for Sequence Feature Glyma11g36940

Feature Type:gene_model
Chromosome:Gm11
Start:38220973
stop:38222747
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma11g36940
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G27300AT Annotation by Michelle Graham. TAIR10: unknown protein; Has 54 Blast hits to 54 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 6; Plants - 34; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | chr1:9483324-9484194 FORWARD LENGTH=200 SoyBaseE_val: 2.00E-13ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005768GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endosome SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0005802GO-cc Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
UniRef100_C6SZ09UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SZ09_SOYBN SoyBaseE_val: 1.00E-73ISS
UniRef100_Q9FZK5UniRef Annotation by Michelle Graham. Most informative UniRef hit: F17L21.9 n=1 Tax=Arabidopsis thaliana RepID=Q9FZK5_ARATH SoyBaseE_val: 9.00E-11ISS

Expression Patterns of Glyma11g36940
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g36940
ParalogEvidenceComments
Glyma18g00850 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g36940 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.11g251800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma11g36940
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma11g36940
>Glyma11g36940.2   sequence type=CDS   gene model=Glyma11g36940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAACAAGATCGAAGACTTGAGCTCATCGACCACGCAATTCAGGTCCAAGGTTCCCTCCATAACAATGATGCTCAATACCAAAATGCTCTTTCCCACCTTTTCTCTGTCTCTCAGTTGAAAATGTTGAAAGGAGAAGAGATACTTGAGCAATTCGAGGCTTCTAGTTCTTCTGAGCCTGTGGCTTCTTTAACTCAGGAAACAGAAAGTGAAAAGGAGAATGGAAGGGAAGGTAAGGGAAGTAAGAATGATGAGATAATCAAAGAGCTGAAGAAGGTGAAGAGGCAGAACTTTGTGACTCATTGTCTTCTTTCGGTGATGATTGTCCTCAATGTGGCTTGGCAACTATCAGAGGTTTCTCTTATTTTGAAAGTCAAAGATGGACTAAGCCACTCTTTTAGATCCAAGAACCTGATGACAAAGAACACCCATCTGAATCTCCATCCCTTCCTTCCATGA
Predicted protein sequences of Glyma11g36940
>Glyma11g36940.2   sequence type=predicted peptide   gene model=Glyma11g36940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEQDRRLELIDHAIQVQGSLHNNDAQYQNALSHLFSVSQLKMLKGEEILEQFEASSSSEPVASLTQETESEKENGREGKGSKNDEIIKELKKVKRQNFVTHCLLSVMIVLNVAWQLSEVSLILKVKDGLSHSFRSKNLMTKNTHLNLHPFLP*






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