Glyma11g36900 - SoyBase

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Report for Sequence Feature Glyma11g36900

Feature Type:	gene_model
Chromosome:	Gm11
Start:	38201123
stop:	38203960
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g36900

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G27290	AT	Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 44 Blast hits to 44 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). \| chr1:9481788-9482576 FORWARD LENGTH=142	SoyBase	E_val: 4.00E-44	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1LN58	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LN58_SOYBN	SoyBase	E_val: 4.00E-91	ISS
UniRef100_Q9FZK6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: F17L21.8 n=1 Tax=Arabidopsis thaliana RepID=Q9FZK6_ARATH	SoyBase	E_val: 1.00E-41	ISS

Expression Patterns of Glyma11g36900

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g36900

Paralog	Evidence	Comments
Glyma18g00820	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g36900 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g252200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g36900

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma11g36900

Limit To All Plant Sequences

>Glyma11g36900.2   sequence type=transcript   gene model=Glyma11g36900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTTAGCACACCAGAACTGAAAATGGTAACGTGAATGATAAAGTAGTCTCTTCTCTCTCTATCTATCCTGTTTGGCATTCCTACCCAAATCACTTTTCTATTTTCCATTCATTCATACATATCCGCGTCAACATGTCATTCATTTTTTGTTCCTTATTGTCAGAACCAAAATCATTTCTCTGACCCTCAATCCAATCACAACAACCTTATCCAATTGCCTCGTTTCTACCAATACAACACAACCAACTCCTTTTATTTATTTCTACCCATTTTTCTTTATTTCATCGGAAAAAACAAAAGATACGATCTTATGATGAGGGGAAGAACAAGACATGAAGAAGATGAGCAATCTCGAGCTTTGTACCAGCTCTCCGCGCTCGTTCTCAACCTCCTTCGCTCGCCTCTGTCGTCGTTGACGTTCTCTGACGAGGTTCCGCCGTTGGCGGCGTCACGGCGTCCCGGGCTGGGTCAGATATCGCCGGCGGGATTCGCCTCCTTGCTGTTGGGAATATCGCTGGCGTTGATGCTGTGTGGATCGGTGACGTTCTTCATCGGGTTCGTGTTGATGCCATGGGTTCTGGGATTGGTCATGCTCTTCTACGTCGCCGGAATCCTCTCCAGCCTCTCCGTCTTCGGCCGCTCCATTCTCTGCTACGCCACCGCTCCACCCTCGCCACGTAAGGACATTCCCGCATGGAAGCTTATGTGAAGTGACCAGATGGAAGAATGAAAATGAGGAGTACGATGGTGTGGGGTTTTGTGCTGTCTATTGGTGCAGGAATCGTGGTTAACTGAGTTTTATTAAGCTACTGAAGTGAACTATGTGGATATGGCTTCTATGTGCATCAGAAATAGCCAAGTAAAATTCTGAAGAACTACTTACTACCTTGGTATTCGGGGGTTGTTCCCAGCTTCTTCCTTCTGTTATCAATTATTTTATTTAACTTTATTCGCACCTTGCTAAATTCTTAAGCTTAGGCTGGTGAATTTCCTTTTGTTCAGTTATAGAAAGAGAAGGAAAATATGATTTGACTCCTGAGAAACAGGGGTTGTACCGGATCAAGAAAAATGTTTTGAAATCGGATGGTTGTTGTGTCTAATTGTCTATAGCAGCTGATATTATTTATTAGCATACCATTCTGCTGTTGAGGGTAGTTGATGAATGATGAGGATTCTTATTGTAGCCCTTATGTTATGGATTAATGCCTTGCTCTCTACTCTAGTGTCACTAATTCTTAACAATTTTAGTTTTTTTTTTCTTGTTAAACAAAGTTATAATTTTTTTTTTCAATTTTGTATAAATGTTGTGTAATCTCTGGTGATACG

>Glyma11g36900.3   sequence type=transcript   gene model=Glyma11g36900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTTAGCACACCAGAACTGAAAATGGTAACGTGAATGATAAAGTAGTCTCTTCTCTCTCTATCTATCCTGTTTGGCATTCCTACCCAAATCACTTTTCTATTTTCCATTCATTCATACATATCCGCGTCAACATGTCATTCATTTTTTGTTCCTTATTGTCAGAACCAAAATCATTTCTCTGACCCTCAATCCAATCACAACAACCTTATCCAATTGCCTCGTTTCTACCAATACAACACAACCAACTCCTTTTATTTATTTCTACCCATTTTTCTTTATTTCATCGGAAAAAACAAAAGATACGATCTTATGATGAGGGGAAGAACAAGACATGAAGAAGATGAGCAATCTCGAGCTTTGTACCAGCTCTCCGCGCTCGTTCTCAACCTCCTTCGCTCGCCTCTGTCGTCGTTGACGTTCTCTGACGAGGTTCCGCCGTTGGCGGCGTCACGGCGTCCCGGGCTGGGTCAGATATCGCCGGCGGGATTCGCCTCCTTGCTGTTGGGAATATCGCTGGCGTTGATGCTGTGTGGATCGGTGACGTTCTTCATCGGGTTCGTGTTGATGCCATGGGTTCTGGGATTGGTCATGCTCTTCTACGTCGCCGGAATCCTCTCCAGCCTCTCCGTCTTCGGCCGCTCCATTCTCTGCTACGCCACCGCTCCACCCTCGCCACCATGGAAGCTTATGTGAAGTGACCAGATGGAAGAATGAAAATGAGGAGTACGATGGTGTGGGGTTTTGTGCTGTCTATTGGTGCAGGAATCGTGGTTAACTGAGTTTTATTAAGCTACTGAAGTGAACTATGTGGATATGGCTTCTATGTGCATCAGAAATAGCCAAGTAAAATTCTGAAGAACTACTTACTACCTTGGTATTCGGGGGTTGTTCCCAGCTTCTTCCTTCTGTTATCAATTATTTTATTTAACTTTATTCGCACCTTGCTAAATTCTTAAGCTTAGGCTGGTGAATTTCCTTTTGTTCAGTTATAGAAAGAGAAGGAAAATATGATTTGACTCCTGAGAAACAGGGGTTGTACCGGATCAAGAAAAATGTTTTGAAATCGGATGGTTGTTGTGTCTAATTGTCTATAGCAGCTGATATTATTTATTAGCATACCATTCTGCTGTTGAGGGTAGTTGATGAATGATGAGGATTCTTATTGTAGCCCTTATGTTATGGATTAATGCCTTGCTCTCTACTCTAGTGTCACTAATTCTTAACAATTTTAGTTTTTTTTTTCTTGTTAAACAAAGTTATAATTTTTTTTTTCAATTTTGTATAAATGTTGTGTAATCTCTGGTGATACG

Coding sequences of Glyma11g36900

Limit To All Plant Sequences

>Glyma11g36900.1   sequence type=CDS   gene model=Glyma11g36900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGAGGGGAAGAACAAGACATGAAGAAGATGAGCAATCTCGAGCTTTGTACCAGCTCTCCGCGCTCGTTCTCAACCTCCTTCGCTCGCCTCTGTCGTCGTTGACGTTCTCTGACGAGGTTCCGCCGTTGGCGGCGTCACGGCGTCCCGGGCTGGGTCAGATATCGCCGGCGGGATTCGCCTCCTTGCTGTTGGGAATATCGCTGGCGTTGATGCTGTGTGGATCGGTGACGTTCTTCATCGGGTTCGTGTTGATGCCATGGGTTCTGGGATTGGTCATGCTCTTCTACGTCGCCGGAATCCTCTCCAGCCTCTCCGTCTTCGGCCGCTCCATTCTCTGCTACGCCACCGCTCCACCCTCGCCACGTAAGGACATTCCCGGCCAGAGCTGGTCGGTCTCTGCTTCATCAGCCTAG

>Glyma11g36900.2   sequence type=CDS   gene model=Glyma11g36900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGAGGGGAAGAACAAGACATGAAGAAGATGAGCAATCTCGAGCTTTGTACCAGCTCTCCGCGCTCGTTCTCAACCTCCTTCGCTCGCCTCTGTCGTCGTTGACGTTCTCTGACGAGGTTCCGCCGTTGGCGGCGTCACGGCGTCCCGGGCTGGGTCAGATATCGCCGGCGGGATTCGCCTCCTTGCTGTTGGGAATATCGCTGGCGTTGATGCTGTGTGGATCGGTGACGTTCTTCATCGGGTTCGTGTTGATGCCATGGGTTCTGGGATTGGTCATGCTCTTCTACGTCGCCGGAATCCTCTCCAGCCTCTCCGTCTTCGGCCGCTCCATTCTCTGCTACGCCACCGCTCCACCCTCGCCACGTAAGGACATTCCCGCATGGAAGCTTATGTGA

>Glyma11g36900.3   sequence type=CDS   gene model=Glyma11g36900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGAGGGGAAGAACAAGACATGAAGAAGATGAGCAATCTCGAGCTTTGTACCAGCTCTCCGCGCTCGTTCTCAACCTCCTTCGCTCGCCTCTGTCGTCGTTGACGTTCTCTGACGAGGTTCCGCCGTTGGCGGCGTCACGGCGTCCCGGGCTGGGTCAGATATCGCCGGCGGGATTCGCCTCCTTGCTGTTGGGAATATCGCTGGCGTTGATGCTGTGTGGATCGGTGACGTTCTTCATCGGGTTCGTGTTGATGCCATGGGTTCTGGGATTGGTCATGCTCTTCTACGTCGCCGGAATCCTCTCCAGCCTCTCCGTCTTCGGCCGCTCCATTCTCTGCTACGCCACCGCTCCACCCTCGCCACCATGGAAGCTTATGTGA

Predicted protein sequences of Glyma11g36900

Limit To All Plant Sequences

>Glyma11g36900.1   sequence type=predicted peptide   gene model=Glyma11g36900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMRGRTRHEEDEQSRALYQLSALVLNLLRSPLSSLTFSDEVPPLAASRRPGLGQISPAGFASLLLGISLALMLCGSVTFFIGFVLMPWVLGLVMLFYVAGILSSLSVFGRSILCYATAPPSPRKDIPGQSWSVSASSA*

>Glyma11g36900.2   sequence type=predicted peptide   gene model=Glyma11g36900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMRGRTRHEEDEQSRALYQLSALVLNLLRSPLSSLTFSDEVPPLAASRRPGLGQISPAGFASLLLGISLALMLCGSVTFFIGFVLMPWVLGLVMLFYVAGILSSLSVFGRSILCYATAPPSPRKDIPAWKLM*

>Glyma11g36900.3   sequence type=predicted peptide   gene model=Glyma11g36900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMRGRTRHEEDEQSRALYQLSALVLNLLRSPLSSLTFSDEVPPLAASRRPGLGQISPAGFASLLLGISLALMLCGSVTFFIGFVLMPWVLGLVMLFYVAGILSSLSVFGRSILCYATAPPSPPWKLM*

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