Glyma11g36870 - SoyBase

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Report for Sequence Feature Glyma11g36870

Feature Type:	gene_model
Chromosome:	Gm11
Start:	38173185
stop:	38176442
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g36870

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G10830	AT	Annotation by Michelle Graham. TAIR10: 15-cis-zeta-carotene isomerase \| chr1:3605736-3607449 REVERSE LENGTH=367	SoyBase	E_val: 8.00E-179	ISS
GO:0016120	GO-bp	Annotation by Michelle Graham. GO Biological Process: carotene biosynthetic process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0090471	GO-mf	Annotation by Michelle Graham. GO Molecular Function: 9,15,9'-tri-cis-zeta-carotene isomerase activity	SoyBase	N/A	ISS
PF07298	PFAM	NnrU protein	JGI		ISS
UniRef100_I1LN52	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LN52_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9SAC0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 15-cis-zeta-carotene isomerase, chloroplastic n=1 Tax=Arabidopsis thaliana RepID=ZCIS_ARATH	SoyBase	E_val: 4.00E-176	ISS

Expression Patterns of Glyma11g36870

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g36870

Paralog	Evidence	Comments
Glyma18g00770	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g36870 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g252500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g36870

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma11g36870

Limit To All Plant Sequences

>Glyma11g36870.1   sequence type=CDS   gene model=Glyma11g36870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGCCTCTGTTGTAGTGTCTACCTCTCTGTCTGTGTGTTTCAACTATGGCTATCATCGTCGTCCATCCATTTCCGCTCTCTCTTGTCATTCGAATTCCATCACCAAAACAAACCTAAAACTCAGTTCGCAATGTTTCTCCAACTCGAATTCGGTAGCCCCGATTTATTGCCGCAAGTTTGTTGCTCGCACTTCAATTGGAGAAAACGAGAGCGAGAGCGAGAAGGAGTTAGGGTTCGTGGGGGAGGACTCTGCGGTGTTTGAATTGGGCAAACAGAAAGTATCTTCGTGGATTTATTTCACCGCTATTTTGGGAGTCGTTCTCTATGTTCTTAACGTCGCATGGATTGATAATTCAACTGGCTACGGCAAAGCTTTTATTGACGCCGTTTCAACGCTTTCCGATTCTAGCGAGGTGGTAATGTTGATCCTAATTCTCATATTTGCTGGTGTCCATAGTGGCTTAGCTAGCTTCCGGAACACTGGTGAGAAACTCATTGGAGAAAGACCTTTCCGTGTACTTTTTGCAGGGATATCACTACCTTTGGCTGTCAGTACTGTTGTGTATTTTATTAACCACAGATATGATGGACTTCAACTCTGGCAGCTCCAGGATGCCCCTGGGCTTCATCAACTTCTGTGGCTTTCAAATTTCATTTCTTTCTTTTTCCTATATCCTTCAACTTTCAATCTTTTAGAGGTTGCAGCTGTTGACAAGCCTAAATTGCATCTATGGGAAACTGGGATCATAAGAATAACCAGGCATCCACAGATGGTTGGGCAGGTTATCTGGTGTCTTGCTCATACGATTTGGATCGGAAATTCCGTGGCTGTTGCAGCTTCAATTGGCTTGATTGCACATCATCTATTTGGTGTCTGGAATGGAGACAGGCGACTGGCCATAAGATATGGGGAGGATTTTGAATTAGTTAAGAGTCGAACAAGTGTTGTCCCTTTTGCAGCAATCCTCGATGGCCGACAAGAGTTACCAAAAGATTTCTACAAGGAGTTTATTCGACTGCCATACTTGACAGTTACTGCAATAACGTTAGGTGCTTACTTTGCACACCCGCTTATGCAGGCTGCTAGTTTCAACCTTCATTGGTAG

Predicted protein sequences of Glyma11g36870

Limit To All Plant Sequences

>Glyma11g36870.1   sequence type=predicted peptide   gene model=Glyma11g36870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAASVVVSTSLSVCFNYGYHRRPSISALSCHSNSITKTNLKLSSQCFSNSNSVAPIYCRKFVARTSIGENESESEKELGFVGEDSAVFELGKQKVSSWIYFTAILGVVLYVLNVAWIDNSTGYGKAFIDAVSTLSDSSEVVMLILILIFAGVHSGLASFRNTGEKLIGERPFRVLFAGISLPLAVSTVVYFINHRYDGLQLWQLQDAPGLHQLLWLSNFISFFFLYPSTFNLLEVAAVDKPKLHLWETGIIRITRHPQMVGQVIWCLAHTIWIGNSVAVAASIGLIAHHLFGVWNGDRRLAIRYGEDFELVKSRTSVVPFAAILDGRQELPKDFYKEFIRLPYLTVTAITLGAYFAHPLMQAASFNLHW*

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