Report for Sequence Feature Glyma11g36810
Feature Type: gene_model
Chromosome: Gm11
Start: 38140701
stop: 38147904
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma11g36810
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G14210 AT
Annotation by Michelle Graham. TAIR10: phytoene desaturase 3 | chr4:8190426-8194769 REVERSE LENGTH=566
SoyBase E_val: 0 ISS
GO:0010155 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of proton transport
SoyBase N/A ISS
GO:0016117 GO-bp
Annotation by Michelle Graham. GO Biological Process: carotenoid biosynthetic process
SoyBase N/A ISS
GO:0016120 GO-bp
Annotation by Michelle Graham. GO Biological Process: carotene biosynthetic process
SoyBase N/A ISS
GO:0046777 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein autophosphorylation
SoyBase N/A ISS
GO:0055114 GO-bp
Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0009534 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid
SoyBase N/A ISS
GO:0009536 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plastid
SoyBase N/A ISS
GO:0009941 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope
SoyBase N/A ISS
GO:0016166 GO-mf
Annotation by Michelle Graham. GO Molecular Function: phytoene dehydrogenase activity
SoyBase N/A ISS
GO:0016491 GO-mf
Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity
SoyBase N/A ISS
GO:0016705 GO-mf
Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
SoyBase N/A ISS
KOG0029
KOG
Amine oxidase
JGI ISS
PTHR10742 Panther
AMINE OXIDASE
JGI ISS
PTHR10742:SF6 Panther
ZETA CAROTENE DESATURASE
JGI ISS
PF01593 PFAM
Flavin containing amine oxidoreductase
JGI ISS
UniRef100_I1LN47 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1LN47_SOYBN
SoyBase E_val: 0 ISS
UniRef100_P28553 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Phytoene dehydrogenase, chloroplastic/chromoplastic n=1 Tax=Glycine max RepID=CRTI_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma11g36810
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma11g36810
Paralog Evidence Comments
Glyma18g00720 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma11g36810 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.11g253000 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma11g36810
Coding sequences of Glyma11g36810
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma11g36810.1 sequence type=CDS gene model=Glyma11g36810 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCCGCGTGTGGCTATATATCTGCTGCCAACTTCAATCATCTTGTTGGCGCCAGAAACTTATCCAAATTCAGTTCTTCGGATGCCACAATTTCGTTATCATTTGGCGGGAGCGATTCAATGGGTCTTAGTTTGCGACCCGCTCCAATTCGTGCTCCTAAGAGGAACCATTTCTCTCCCTTGCGTGTCGTTTGCGTCGATTATCCTCGACCGGAGCTCGAAAACACTGTTAATTTCGTCGAAGCTGCTTACTTGTCTTCCACCTTCCGTGCTTCTCCGCGTCCACTAAAACCCTTGAACATCGTTATTGCTGGCGCAGGATTGGCTGGTTTATCAACTGCAAAATATTTGGCTGATGCTGGGCATAAACCTATATTGCTGGAAGCAAGAGACGTTCTAGGTGGAAAGGTTGCTGCATGGAAAGACAAGGATGGAGACTGGTATGAGACAGGTCTACACATCTTCTTTGGGGCTTACCCTAATGTACAGAACTTATTTGGAGAACTTGGCATTAATGATCGGTTACAATGGAAGGAGCATTCTATGATTTTTGCTATGCCAAATAAGCCTGGAGAGTTTAGTCGATTTGATTTTCCCGATGTCCTTCCCGCCCCATTAAATGGAATATGGGCAATATTGAGGAACAATGAGATGCTGACCTGGCCAGAGAAAGTCAAATTTGCAATTGGGCTTCTACCAGCTATGCTTGGTGGACAGCCATATGTTGAGGCTCAAGATGGTCTTTCAGTTCAAGAATGGATGAAAAAGCAGGGCGTACCTGAGCGAGTAACCGATGAGGTGTTCATAGCAATGTCGAAGGCACTAAACTTCATCAATCCTGATGAACTTTCAATGCAATGTATATTGATTGCTTTAAACCGATTTCTTCAGGAGAAACATGGTTCTAAGATGGCCTTTTTGGATGGCAATCCCCCTGAAAGACTTTGTATGCCGATAGTTGATCATATTCAGTCCTTGGGTGGTGAAGTTCATCTAAATTCGCGCATTCAAAAAATTGAGCTAAATGATGATGGAACGGTGAAGAGCTTCTTACTAAATAATGGGAAAGTGATGGAAGGAGATGCTTATGTGTTTGCAACACCTGTGGATATTCTGAAGCTTCTTCTACCAGACAACTGGAAAGGGATTCCGTATTTCCAGAGACTGGATAAATTAGTTGGAGTCCCAGTCATAAATGTTCACATATGGTTTGACAGAAAACTGAAGAACACATATGATCACCTTCTCTTTAGCAGAAGTCCCCTTCTAAGTGTATATGCTGATATGTCAGTAACTTGCAAGGAGTATTATAGCCCAAACCAGTCTATGTTAGAGTTGGTTTTTGCACCAGCCGAAGAATGGATTTCACGTAGTGATGAAGATATTATTCAAGCCACGATGGCTGAGCTTGCCAAACTCTTCCCTAATGAAATATCTGCAGACCAAAGCAAAGCAAAGATTCTCAAGTACCATGTTGTTAAAACACCAAGGTCAGTTTACAAAACTGTTCCAAATTGTGAACCTTGTCGTCCCTTACAAAGATCTCCTTTAGAAGGTTTCTATTTAGCTGGAGATTACACAAAACAAAAATATTTAGCTTCAATGGAAGGCGCTGTTCTTTCTGGGAAGCTTTGTGCACAGGCTATTGTACAGGATTCTGAGCTACTAGCTACTCGGGGCCAGAAAAGAATGGCTAAAGCAAGTGTTGTGTAA
Predicted protein sequences of Glyma11g36810
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma11g36810.1 sequence type=predicted peptide gene model=Glyma11g36810 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAACGYISAANFNHLVGARNLSKFSSSDATISLSFGGSDSMGLSLRPAPIRAPKRNHFSPLRVVCVDYPRPELENTVNFVEAAYLSSTFRASPRPLKPLNIVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDKDGDWYETGLHIFFGAYPNVQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPDVLPAPLNGIWAILRNNEMLTWPEKVKFAIGLLPAMLGGQPYVEAQDGLSVQEWMKKQGVPERVTDEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCMPIVDHIQSLGGEVHLNSRIQKIELNDDGTVKSFLLNNGKVMEGDAYVFATPVDILKLLLPDNWKGIPYFQRLDKLVGVPVINVHIWFDRKLKNTYDHLLFSRSPLLSVYADMSVTCKEYYSPNQSMLELVFAPAEEWISRSDEDIIQATMAELAKLFPNEISADQSKAKILKYHVVKTPRSVYKTVPNCEPCRPLQRSPLEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDSELLATRGQKRMAKASVV*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
