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Report for Sequence Feature Glyma11g36780

Feature Type:gene_model
Chromosome:Gm11
Start:38119247
stop:38120221
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma11g36780
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G31980AT Annotation by Michelle Graham. TAIR10: PHYTOCYSTATIN 2 | chr2:13609246-13609770 REVERSE LENGTH=147 SoyBaseE_val: 4.00E-31ISS
GO:0009062GO-bp Annotation by Michelle Graham. GO Biological Process: fatty acid catabolic process SoyBaseN/AISS
GO:0010162GO-bp Annotation by Michelle Graham. GO Biological Process: seed dormancy process SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0004869GO-mf Annotation by Michelle Graham. GO Molecular Function: cysteine-type endopeptidase inhibitor activity SoyBaseN/AISS
PTHR11413Panther CYSTATIN FAMILY MEMBER JGI ISS
PTHR11413:SF13Panther CYSTATIN C JGI ISS
PF00031PFAM Cystatin domain JGI ISS
UniRef100_I1LN44UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LN44_SOYBN SoyBaseE_val: 2.00E-87ISS
UniRef100_Q84XY6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Cystatin n=1 Tax=Malus x domestica RepID=Q84XY6_MALDO SoyBaseE_val: 1.00E-40ISS

Expression Patterns of Glyma11g36780
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g36780
ParalogEvidenceComments
Glyma18g00690 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g36780 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.11g253300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma11g36780
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma11g36780
>Glyma11g36780.1   sequence type=CDS   gene model=Glyma11g36780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGTGGCTTTGACGATTGTGTTGAGCTTGCTCTCGGTTCTCTCTTCTGCATCTTGTGCACGAATGGTGGGGGGGAAGACGGAGGTCCCCGACGTGAGAACAAACAGGGAAGTGCAAGAGCTTGGAAGGTTCGCGGTGGAGGAGTACAACCGCGGTTTGAAACAGTGGAAGAACAATGGGAGTGAACAGTTGAACTTTTCGGAGGTGGTGGAGGCGCAGCAACAAGTGGTGTCAGGAATGAAGTACTACTTGAAGATCTCAGCTACTCATAAAGGGGTTCACAAAATGTTCACCTCTGTTGTGGTGGTCAAGCCATGGCTTCATTCCAAGCAACTCCTTCATTTTGCGCCTGCAGCACCATCCAGTAAAGATTTTTGA
Predicted protein sequences of Glyma11g36780
>Glyma11g36780.1   sequence type=predicted peptide   gene model=Glyma11g36780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAVALTIVLSLLSVLSSASCARMVGGKTEVPDVRTNREVQELGRFAVEEYNRGLKQWKNNGSEQLNFSEVVEAQQQVVSGMKYYLKISATHKGVHKMFTSVVVVKPWLHSKQLLHFAPAAPSSKDF*






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