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Report for Sequence Feature Glyma11g36730

Feature Type:gene_model
Chromosome:Gm11
Start:38084594
stop:38086445
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma11g36730
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G23730AT Annotation by Michelle Graham. TAIR10: xyloglucan endotransglucosylase/hydrolase 16 | chr3:8550222-8551248 FORWARD LENGTH=291 SoyBaseE_val: 4.00E-123ISS
GO:0005975GO-bp Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process SoyBaseN/AISS
GO:0006073GO-bp Annotation by Michelle Graham. GO Biological Process: cellular glucan metabolic process SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0005618GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cell wall SoyBaseN/AISS
GO:0048046GO-cc Annotation by Michelle Graham. GO Cellular Compartment: apoplast SoyBaseN/AISS
GO:0004553GO-mf Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds SoyBaseN/AISS
GO:0016762GO-mf Annotation by Michelle Graham. GO Molecular Function: xyloglucan:xyloglucosyl transferase activity SoyBaseN/AISS
GO:0016798GO-mf Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on glycosyl bonds SoyBaseN/AISS
PTHR10963Panther SECRETED GLUCOSIDASE-RELATED JGI ISS
PTHR10963:SF14Panther BETA-GLUCANASE JGI ISS
PF00722PFAM Glycosyl hydrolases family 16 JGI ISS
PF06955PFAM Xyloglucan endo-transglycosylase (XET) C-terminus JGI ISS
UniRef100_C6TMD1UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=C6TMD1_SOYBN SoyBaseE_val: 3.00E-150ISS
UniRef100_G7JAU8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Xyloglucan endotransglycosylase/hydrolase XTH-21 n=1 Tax=Medicago truncatula RepID=G7JAU8_MEDTR SoyBaseE_val: 2.00E-132ISS

Expression Patterns of Glyma11g36730
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g36730
ParalogEvidenceComments
Glyma18g00630 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g36730 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.11g253900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma11g36730
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma11g36730
>Glyma11g36730.2   sequence type=CDS   gene model=Glyma11g36730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGCTCAAGCTCGTTGCTGGCAACTCTGCCGGCACTGTCACTGCTTACTACTTGTCGTCTCAAGGGCCAACTCATGACGAGATTGATTTTGAATTCTTGGGAAACGTGAGCGGTGACCCTTACATTCTCCACACAAACGTGTTTACCCAAGGCCAAGGGAACAGAGAGCAACAATTCTACCTCTGGTTCGACCCCACCAGAAACTTCCACACTTACTCCATCATCTGGAAGCCCCAACACATCATATTCTTGGTGGATAACATTCCCATAAGGGTGTTCAAGAATGGTGAGACTATTGGCGTTCCTTTCCCAAAGAAGCAACCCATGAGAATCTATTCTAGCCTGTGGAACGCTGATGACTGGGCCACCAGAGGTGGTTTGGTGAAAACTGATTGGTCCAAGGCACCCTTTACAGCCTACTACCGCAATTTCAAAGCCACAGAGTTCTCCACCAATTCCTTCTCTGATGCTGCATGGCAGAGCAACGAGCTTGATGCCTATGGCAGAAGAAAACTGAGATGGGTTCAGAAGTACTTCATGATCTATAACTACTGCAACGATCTTAAGCGATTCCCACAAGGCATTCCTGTTGAGTGCAGGCGCTGA
Predicted protein sequences of Glyma11g36730
>Glyma11g36730.2   sequence type=predicted peptide   gene model=Glyma11g36730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQLKLVAGNSAGTVTAYYLSSQGPTHDEIDFEFLGNVSGDPYILHTNVFTQGQGNREQQFYLWFDPTRNFHTYSIIWKPQHIIFLVDNIPIRVFKNGETIGVPFPKKQPMRIYSSLWNADDWATRGGLVKTDWSKAPFTAYYRNFKATEFSTNSFSDAAWQSNELDAYGRRKLRWVQKYFMIYNYCNDLKRFPQGIPVECRR*






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