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Report for Sequence Feature Glyma11g36580

Feature Type:gene_model
Chromosome:Gm11
Start:38005400
stop:38008222
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G13850AT Annotation by Michelle Graham. TAIR10: glycine-rich RNA-binding protein 2 | chr4:8021314-8022065 FORWARD LENGTH=129 SoyBaseE_val: 3.00E-39ISS
GO:0006364GO-bp Annotation by Michelle Graham. GO Biological Process: rRNA processing SoyBaseN/AISS
GO:0006970GO-bp Annotation by Michelle Graham. GO Biological Process: response to osmotic stress SoyBaseN/AISS
GO:0009409GO-bp Annotation by Michelle Graham. GO Biological Process: response to cold SoyBaseN/AISS
GO:0009414GO-bp Annotation by Michelle Graham. GO Biological Process: response to water deprivation SoyBaseN/AISS
GO:0009631GO-bp Annotation by Michelle Graham. GO Biological Process: cold acclimation SoyBaseN/AISS
GO:0009651GO-bp Annotation by Michelle Graham. GO Biological Process: response to salt stress SoyBaseN/AISS
GO:0009845GO-bp Annotation by Michelle Graham. GO Biological Process: seed germination SoyBaseN/AISS
GO:0031564GO-bp Annotation by Michelle Graham. GO Biological Process: transcription antitermination SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0001072GO-mf Annotation by Michelle Graham. GO Molecular Function: RNA binding transcription antitermination factor activity SoyBaseN/AISS
GO:0003690GO-mf Annotation by Michelle Graham. GO Molecular Function: double-stranded DNA binding SoyBaseN/AISS
GO:0003697GO-mf Annotation by Michelle Graham. GO Molecular Function: single-stranded DNA binding SoyBaseN/AISS
GO:0003723GO-mf Annotation by Michelle Graham. GO Molecular Function: RNA binding SoyBaseN/AISS
GO:0005507GO-mf Annotation by Michelle Graham. GO Molecular Function: copper ion binding SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
PTHR24012Panther FAMILY NOT NAMED JGI ISS
PTHR24012:SF161Panther RNA-BINDING PROTEIN, PUTATIVE JGI ISS
PF00076PFAM RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) JGI ISS
UniRef100_I1LN27UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LN27_SOYBN SoyBaseE_val: 2.00E-97ISS
UniRef100_P93486UniRef Annotation by Michelle Graham. Most informative UniRef hit: Glycine-rich RNA-binding protein n=1 Tax=Pisum sativum RepID=P93486_PEA SoyBaseE_val: 3.00E-52ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g36580 not represented in the dataset

Glyma11g36580 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma18g00480 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.11g255000 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma11g36580.1   sequence type=CDS   gene model=Glyma11g36580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCTTCTGTAATAAGGTTGGAAATGTCTTGAGGCAGGGTGCTGCTCGCAGCACACAAGCACCTGTTTCATCCATGCTTAATTACATTCGCTGCATGTCTTCAAGCAAGCTTTTTATTGGAGGCCTTTCATATGGAGTTGACGATCAGTCTCTTAAGGATGCATTTTCTGGCTTTGGAGATGTGGTTGATGCAAAAGTTATAACTGACAGAGACTCTGGAAGATCAAGGGGATTTGGATTTGTCAACTTCTCCAATGATGAGTCTGCAAGTTCGGCACTCTCTGCAATGGATGGGAAGATGGGCGAAGCATTAGGGTATCCTATGCAAATGATAGACCTTCTGGACCTCAATCTGGCGGCGGCGGCGGTGGTGGTTATCGCAGTGGGGGTTTTGGCGGCGGGTGGTGATTTTGCTTCTCGCAATGGTGGTTGGTGA

>Glyma11g36580.1   sequence type=predicted peptide   gene model=Glyma11g36580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAFCNKVGNVLRQGAARSTQAPVSSMLNYIRCMSSSKLFIGGLSYGVDDQSLKDAFSGFGDVVDAKVITDRDSGRSRGFGFVNFSNDESASSALSAMDGKMGEALGYPMQMIDLLDLNLAAAAVVVIAVGVLAAGGDFASRNGGW*







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