Glyma11g36540 - SoyBase

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Report for Sequence Feature Glyma11g36540

Feature Type:	gene_model
Chromosome:	Gm11
Start:	37978147
stop:	37981875
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g36540

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G23910	AT	Annotation by Michelle Graham. TAIR10: BEST Arabidopsis thaliana protein match is: RNA-directed DNA polymerase (reverse transcriptase)-related family protein (TAIR:AT3G24255.2); Has 562 Blast hits to 532 proteins in 147 species: Archae - 28; Bacteria - 51; Metazoa - 157; Fungi - 82; Plants - 85; Viruses - 6; Other Eukaryotes - 153 (source: NCBI BLink). \| chr3:8636594-8639344 REVERSE LENGTH=421	SoyBase	E_val: 1.00E-81	ISS
GO:0006979	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to oxidative stress	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1LN22	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LN22_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_P92952	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: HAPp48,5 protein (Fragment) n=1 Tax=Arabidopsis thaliana RepID=P92952_ARATH	SoyBase	E_val: 5.00E-79	ISS

Expression Patterns of Glyma11g36540

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g36540

Paralog	Evidence	Comments
Glyma18g00450	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g36540 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g255500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g36540

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma11g36540

Limit To All Plant Sequences

>Glyma11g36540.2   sequence type=transcript   gene model=Glyma11g36540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTGGGAAGAGAGAGAGAGAGAGAGAAAGATGGTAGAATCTGGCGAGCTCCGCAGTCGAATTGCAGAGATTCAGAAGCTTTGCAATGCTAATGACGACGAATTGGACAATGACTCTGCTCTTCTTCATTTTAAGACCGCACTGCAGCAGATTGATTCCGACTTCTCTTCTATGGAAATTCAAGATGCTTACCTACACCATTTGAAAGAGGAGCTTAACAACCTCCACCTTGAAACCGCCCAAGTAACAAATCAGATTCACCTTCTTTCCAAAACTCACAACGATGATTGTATTCTCTTGGAGGCCAAACTTGGAGAAATCGATTGTTCTTTAGATTATAATGTCACATCTAAGAACACAGCTGAAGGCATTGATTCCCCTATGCTGGCAGATGATTGTCTAAATTTGACCGTTGCAAATCTAGACAAGAATTTAGAGCAATTCGAACTTGATAATAAGATTGATGAAATGAAGTCGGTTCTAAACTCTCTCCAGAATCTTCAGTTTACAGTCAAATGGTTTGAAGTTGTAGAGCAGATTGAGGATGCATTCACGGGGCTAAAAGTGCTTGCATTCGATGAGAATTGCATTCGTTTGTCATTGAAGACTTATATGCCAACATTTGAGGGTATTTCCTACCTACCGAGAATTGAAGCTACCGTTGATGCAGCTGAACTCAATTATGAGTTATTAATTGAAGTTTTTGAGGGGACTATGAGGTTAAAGAATGTTCAGGTTTTTCCAAATGATATATATGTGAACGACATTGTTGATACTGCAAAATTAGTCAGCAAGTCCTCGTTGCAGTGGTTTATACAGAAAGTTCAAGATAGAATTATACTAAGCACACTTAGGCATCTTGTAGTAAAGGATGCTAATAAATCAAGATATTCGCTTGAATACTTGGACAAAGATAAGACTATTGTGGCTCATATGGCTGGAGGAATTGATGCGTACATAAAGTTGTCACATGGTTGGCCTATATTTGGTTCTCCATTGAAGCTGATATGTATAAAGGGATCAGATGATTTGAAGAGAACTTCTTTAAGTTTTCATTGCAAAGTTGAGAAATTGGCCAATTCTTTAGATACCCATATTCGGCAGAATATATCAAGCTTCGTCGATGCAGTTGAAAAAGTACTTATGGAACAATTGCAGCTTGATCTTCGGGTCGGTGATAATTCAGGTTAAGGATATTATCATATTTAAGATGCTAATTGTAGATATACCTCCAGAACCTTAATTTGTGGTTGAAATATTGCTTCATGTGCTGAAAGTCGTTTTCTACTGGATGGAACAAATGTTATTAATGTCTTGTAAAGATGATTTTCTGCAATTTAGACATGAAAGTCATGTCAAATAGGCATATGTGACGATTGAATGGTCTGAAACAGCTAATTTATTAGATATTGTACTTTGTTGCAAC

Coding sequences of Glyma11g36540

Limit To All Plant Sequences

>Glyma11g36540.1   sequence type=CDS   gene model=Glyma11g36540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTAGAATCTGGCGAGCTCCGCAGTCGAATTGCAGAGATTCAGAAGCTTTGCAATGCTAATGACGACGAATTGGACAATGACTCTGCTCTTCTTCATTTTAAGACCGCACTGCAGCAGATTGATTCCGACTTCTCTTCTATGGAAATTCAAGATGCTTACCTACACCATTTGAAAGAGGAGCTTAACAACCTCCACCTTGAAACCGCCCAAGTAACAAATCAGATTCACCTTCTTTCCAAAACTCACAACGATGATTGTATTCTCTTGGAGGCCAAACTTGGAGAAATCGATTGTTCTTTAGATTATAATGTCACATCTAAGTATCAGAAGAACACAGCTGAAGGCATTGATTCCCCTATGCTGGCAGATGATTGTCTAAATTTGACCGTTGCAAATCTAGACAAGAATTTAGAGCAATTCGAACTTGATAATAAGATTGATGAAATGAAGTCGGTTCTAAACTCTCTCCAGAATCTTCAGTTTACAGTCAAATGGTTTGAAGTTGTAGAGCAGATTGAGGATGCATTCACGGGGCTAAAAGTGCTTGCATTCGATGAGAATTGCATTCGTTTGTCATTGAAGACTTATATGCCAACATTTGAGGGTATTTCCTACCTACCGAGAATTGAAGCTACCGTTGATGCAGCTGAACTCAATTATGAGTTATTAATTGAAGTTTTTGAGGGGACTATGAGGTTAAAGAATGTTCAGGTTTTTCCAAATGATATATATGTGAACGACATTGTTGATACTGCAAAATTAGTCAGCAAGTCCTCGTTGCAGTGGTTTATACAGAAAGTTCAAGATAGAATTATACTAAGCACACTTAGGCATCTTGTAGTAAAGGATGCTAATAAATCAAGATATTCGCTTGAATACTTGGACAAAGATAAGACTATTGTGGCTCATATGGCTGGAGGAATTGATGCGTACATAAAGTTGTCACATGGTTGGCCTATATTTGGTTCTCCATTGAAGCTGATATGTATAAAGGGATCAGATGATTTGAAGAGAACTTCTTTAAGTTTTCATTGCAAAGTTGAGAAATTGGCCAATTCTTTAGATACCCATATTCGGCAGAATATATCAAGCTTCGTCGATGCAGTTGAAAAAGTACTTATGGAACAATTGCAGCTTGATCTTCGGGTCGGTGATAATTCAGGTTAA

>Glyma11g36540.2   sequence type=CDS   gene model=Glyma11g36540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTAGAATCTGGCGAGCTCCGCAGTCGAATTGCAGAGATTCAGAAGCTTTGCAATGCTAATGACGACGAATTGGACAATGACTCTGCTCTTCTTCATTTTAAGACCGCACTGCAGCAGATTGATTCCGACTTCTCTTCTATGGAAATTCAAGATGCTTACCTACACCATTTGAAAGAGGAGCTTAACAACCTCCACCTTGAAACCGCCCAAGTAACAAATCAGATTCACCTTCTTTCCAAAACTCACAACGATGATTGTATTCTCTTGGAGGCCAAACTTGGAGAAATCGATTGTTCTTTAGATTATAATGTCACATCTAAGAACACAGCTGAAGGCATTGATTCCCCTATGCTGGCAGATGATTGTCTAAATTTGACCGTTGCAAATCTAGACAAGAATTTAGAGCAATTCGAACTTGATAATAAGATTGATGAAATGAAGTCGGTTCTAAACTCTCTCCAGAATCTTCAGTTTACAGTCAAATGGTTTGAAGTTGTAGAGCAGATTGAGGATGCATTCACGGGGCTAAAAGTGCTTGCATTCGATGAGAATTGCATTCGTTTGTCATTGAAGACTTATATGCCAACATTTGAGGGTATTTCCTACCTACCGAGAATTGAAGCTACCGTTGATGCAGCTGAACTCAATTATGAGTTATTAATTGAAGTTTTTGAGGGGACTATGAGGTTAAAGAATGTTCAGGTTTTTCCAAATGATATATATGTGAACGACATTGTTGATACTGCAAAATTAGTCAGCAAGTCCTCGTTGCAGTGGTTTATACAGAAAGTTCAAGATAGAATTATACTAAGCACACTTAGGCATCTTGTAGTAAAGGATGCTAATAAATCAAGATATTCGCTTGAATACTTGGACAAAGATAAGACTATTGTGGCTCATATGGCTGGAGGAATTGATGCGTACATAAAGTTGTCACATGGTTGGCCTATATTTGGTTCTCCATTGAAGCTGATATGTATAAAGGGATCAGATGATTTGAAGAGAACTTCTTTAAGTTTTCATTGCAAAGTTGAGAAATTGGCCAATTCTTTAGATACCCATATTCGGCAGAATATATCAAGCTTCGTCGATGCAGTTGAAAAAGTACTTATGGAACAATTGCAGCTTGATCTTCGGGTCGGTGATAATTCAGGTTAA

Predicted protein sequences of Glyma11g36540

Limit To All Plant Sequences

>Glyma11g36540.1   sequence type=predicted peptide   gene model=Glyma11g36540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVESGELRSRIAEIQKLCNANDDELDNDSALLHFKTALQQIDSDFSSMEIQDAYLHHLKEELNNLHLETAQVTNQIHLLSKTHNDDCILLEAKLGEIDCSLDYNVTSKYQKNTAEGIDSPMLADDCLNLTVANLDKNLEQFELDNKIDEMKSVLNSLQNLQFTVKWFEVVEQIEDAFTGLKVLAFDENCIRLSLKTYMPTFEGISYLPRIEATVDAAELNYELLIEVFEGTMRLKNVQVFPNDIYVNDIVDTAKLVSKSSLQWFIQKVQDRIILSTLRHLVVKDANKSRYSLEYLDKDKTIVAHMAGGIDAYIKLSHGWPIFGSPLKLICIKGSDDLKRTSLSFHCKVEKLANSLDTHIRQNISSFVDAVEKVLMEQLQLDLRVGDNSG*

>Glyma11g36540.2   sequence type=predicted peptide   gene model=Glyma11g36540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVESGELRSRIAEIQKLCNANDDELDNDSALLHFKTALQQIDSDFSSMEIQDAYLHHLKEELNNLHLETAQVTNQIHLLSKTHNDDCILLEAKLGEIDCSLDYNVTSKNTAEGIDSPMLADDCLNLTVANLDKNLEQFELDNKIDEMKSVLNSLQNLQFTVKWFEVVEQIEDAFTGLKVLAFDENCIRLSLKTYMPTFEGISYLPRIEATVDAAELNYELLIEVFEGTMRLKNVQVFPNDIYVNDIVDTAKLVSKSSLQWFIQKVQDRIILSTLRHLVVKDANKSRYSLEYLDKDKTIVAHMAGGIDAYIKLSHGWPIFGSPLKLICIKGSDDLKRTSLSFHCKVEKLANSLDTHIRQNISSFVDAVEKVLMEQLQLDLRVGDNSG*

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