Glyma11g36430 - SoyBase

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Report for Sequence Feature Glyma11g36430

Feature Type:	gene_model
Chromosome:	Gm11
Start:	37922567
stop:	37925092
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g36430

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G39980	AT	Annotation by Michelle Graham. TAIR10: Tetratricopeptide repeat (TPR)-like superfamily protein \| chr5:16001036-16003072 REVERSE LENGTH=678	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
PTHR24015	Panther	FAMILY NOT NAMED	JGI		ISS
PF01535	PFAM	PPR repeat	JGI		ISS
UniRef100_B9RUK2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9RUK2_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1LN12	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LN12_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma11g36430

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g36430

Paralog	Evidence	Comments
Glyma18g00360	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g36430 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g256300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g36430

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma11g36430

Limit To All Plant Sequences

>Glyma11g36430.2   sequence type=transcript   gene model=Glyma11g36430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGACTTGAGCTTGAGAGTGGGCATCTGTGATCTGGGGGGTCGGAGTTTCGGCCGAAACCGGGGTCTTCCGCAATGAGTGAAGCCCAAATTACTGAGAAATGAGCAGTAGCTAGCCAGTAACTAACAAGTATGTAGAGATAGATAATCCATAACCATAATTGAAGATGTGCACGGTGGTTTCAAGTTCAGTCCTTGTGGGATGGCTTTCTTCTTCTTGTTCTAAAACGAAAGGGAGCGTTGGCAATGGCATAAGCCATTTAAGCCCTGCCACTCGTGCTATATCCGTACTAGCCACGGCTATGGCTAAAGATGTGTGGACCCGAACATCATCTTCCAACACCAGTAGGCAACGTAGTAGTAGTAGTAGTAGAAGGCAGCAGCAGTACTTGGACCGCAGCGTGGACATGGAAGTGCTATTAGCGGCAATTGGACAGACCCAGAACGAGGATGAACTGTATGCGGTTATGTCTCCCTACAACGGGAGGCAGTTATCCATGCGCTTCATGGTTTCCCTGCTATCCCGCGAGCCTGATTGGCAACGCGCTCTTGCCCTTCTCGATTGGATCAACGACAAGGCCCTCTATCGTCCCTCCCTCTTCGCCTACAACGTCCTTCTCCGCAACGTCCTTCGGGCCAAGCAGTGGCACCTCGCACACGGCCTGTTCGATGAAATGCGCCAAAAGGGCCTCTCCCCCGATAGATGGAGCAAGACAACGTCTCCGGCGACCTCGTTCTCTACAGTAACTTGATTGACCTTGCCCGCAAGTTGTCCGATTATTCCAAGGCCATTTCTATCTTCTCCAGATTGAAAGCCTCCACTATTACCCCCGACCTTATTGCTTATAACTCCATGATCAATGTCTTTGGAAAAGCCAAGCTCTTCCGTGAGGCTCGCCTTCTTCTTCAAGAGATGAGAGACAATGCCGTTCAACCCGACACCGTCAGCTATTCCACCCTTCTTGCCATCTACGTTGACAACCAAAAGTTTGTTGAAGCACTTTCTCTATTTTCCGAAATGAATGAAGCTAAATGCCCTCTTGATCTCACCACTTGTAACATCATGATTGATGTTTATGGCCAGCTTCACATGCCCAAGGAAGCCGACCGCCTCTTCTGGAGCATGAGGAAAATGGGGATTCAACCCAACGTCATTAGCTATAATACGCTCTTGAGGGTTTATGGAGAGGCTGACCTATTTGGGGAAGCCATCCATCTATTCCGTTTGATGCAAAGTAAGGATGTACAACAAAATGTTGTCACCTACAACACTATGATTAATATTTATGGCAAGACTCTCGAGCACGAGAAGGCTACAAATCTCATTCAAGAAATGAATAAAAGGGGTATTGAACCCAATGCCATCACTTATTCAACCATAATATCTATATGGGAGAAGGCAGGGAAACTGGACCGTGCTGCCATCTTGTTTCAGAAATTAAGGAGTTCTGGAGTTCGAATTGATGAGGTTCTTTACCAGACAATGATTGTAGCCTACGAGAGGACGGGTTTAGTTGCTCATGCAAAGCGTCTACTTCATGAGCTCAAGCGACCGGACAACATTCCCAGGGACACTGCAATTGCAATTCTTGCCAGAGCTGGTAGAATTGAAGAGGCTACCTGGGTTTTCCGGCAGGCTTTTGATGCTCGAGAGGTCAAAGATATATCTGTGTTTGGTTGCATGATTAATCTTTTCTCTAAGAACAAAAAGTATGCCAATGTAGTTGAAGTGTTTGAGAAGATGAGAGAGGTGGGATATTTTCCTGATTCTGATGTTATTGCTCTCGTGCTGAATGCTTTTGGAAAGCTGCGTGAATTTGATAAAGCGGATGCTTTATATAGACAGATGCATGAAGAAGGGTGTGTTTTTCCAGATGAAGTTCATTTCCAGATGCTGAGTCTATATGGTGCAAGAAAAGATTTCGTGATGGTAGAATCATTGTTTGAGAAGCTGGATTCCAATCCTAATATCAACAAGAAAGAGTTGCATCTTGTTGTTGCTAGCATTTATGAGAGAGCAGATAGACTTAATGATGCATCCCGAATCATGAATAGGATGAATAAAAAAGCAAACAGAATTCATGATCATGCTTAGCAGTGTGCATCTGCCTTTCCCTGTGTAACTTGTTGATGAACATTCTTTAGCCCTGTAATCAGAAAACCTCTCATTCCCAACTGAGGGTCATGTATATATGATATTGAGCAACGACGCATATTCTGAATAGCAGCATCATGATAATTAATCATTAAAGTTTTATTCCCGGCTTATGAGTAATCTTCTTTTATTGCCATGCTCTGTCGGATTTCTTTTTAGTGTTTCCCGGTCGCTCTTTCTGCCAATATATGACGGTGTTTGATGTAATCCGATGAGAATTTCAATTGCAGATGTAACTGAAAACGATGAATGTCTTGTGCATTGTTGTGTTTTTCTGCGAAAATCAATACTGTGCAAA

Coding sequences of Glyma11g36430

Limit To All Plant Sequences

>Glyma11g36430.1   sequence type=CDS   gene model=Glyma11g36430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTAAAGATGTGTGGACCCGAACATCATCTTCCAACACCAGTAGGCAACGTAGTAGTAGTAGTAGTAGAAGGCAGCAGCAGTACTTGGACCGCAGCGTGGACATGGAAGTGCTATTAGCGGCAATTGGACAGACCCAGAACGAGGATGAACTGTATGCGGTTATGTCTCCCTACAACGGGAGGCAGTTATCCATGCGCTTCATGGTTTCCCTGCTATCCCGCGAGCCTGATTGGCAACGCGCTCTTGCCCTTCTCGATTGGATCAACGACAAGGCCCTCTATCGTCCCTCCCTCTTCGCCTACAACGTCCTTCTCCGCAACGTCCTTCGGGCCAAGCAGTGGCACCTCGCACACGGCCTGTTCGATGAAATGCGCCAAAAGGGCCTCTCCCCCGATAGGTACACTTACTCCACCCTAATTACTTGTTTCGGCAAACACGGCTTGTTTGATTCTTCCCTCTTTTGGCTCCAGCAGATGGAGCAAGACAACGTCTCCGGCGACCTCGTTCTCTACAGTAACTTGATTGACCTTGCCCGCAAGTTGTCCGATTATTCCAAGGCCATTTCTATCTTCTCCAGATTGAAAGCCTCCACTATTACCCCCGACCTTATTGCTTATAACTCCATGATCAATGTCTTTGGAAAAGCCAAGCTCTTCCGTGAGGCTCGCCTTCTTCTTCAAGAGATGAGAGACAATGCCGTTCAACCCGACACCGTCAGCTATTCCACCCTTCTTGCCATCTACGTTGACAACCAAAAGTTTGTTGAAGCACTTTCTCTATTTTCCGAAATGAATGAAGCTAAATGCCCTCTTGATCTCACCACTTGTAACATCATGATTGATGTTTATGGCCAGCTTCACATGCCCAAGGAAGCCGACCGCCTCTTCTGGAGCATGAGGAAAATGGGGATTCAACCCAACGTCATTAGCTATAATACGCTCTTGAGGGTTTATGGAGAGGCTGACCTATTTGGGGAAGCCATCCATCTATTCCGTTTGATGCAAAGTAAGGATGTACAACAAAATGTTGTCACCTACAACACTATGATTAATATTTATGGCAAGACTCTCGAGCACGAGAAGGCTACAAATCTCATTCAAGAAATGAATAAAAGGGGTATTGAACCCAATGCCATCACTTATTCAACCATAATATCTATATGGGAGAAGGCAGGGAAACTGGACCGTGCTGCCATCTTGTTTCAGAAATTAAGGAGTTCTGGAGTTCGAATTGATGAGGTTCTTTACCAGACAATGATTGTAGCCTACGAGAGGACGGGTTTAGTTGCTCATGCAAAGCGTCTACTTCATGAGCTCAAGCGACCGGACAACATTCCCAGGGACACTGCAATTGCAATTCTTGCCAGAGCTGGTAGAATTGAAGAGGCTACCTGGGTTTTCCGGCAGGCTTTTGATGCTCGAGAGGTCAAAGATATATCTGTGTTTGGTTGCATGATTAATCTTTTCTCTAAGAACAAAAAGTATGCCAATGTAGTTGAAGTGTTTGAGAAGATGAGAGAGGTGGGATATTTTCCTGATTCTGATGTTATTGCTCTCGTGCTGAATGCTTTTGGAAAGCTGCGTGAATTTGATAAAGCGGATGCTTTATATAGACAGATGCATGAAGAAGGGTGTGTTTTTCCAGATGAAGTTCATTTCCAGATGCTGAGTCTATATGGTGCAAGAAAAGATTTCGTGATGGTAGAATCATTGTTTGAGAAGCTGGATTCCAATCCTAATATCAACAAGAAAGAGTTGCATCTTGTTGTTGCTAGCATTTATGAGAGAGCAGATAGACTTAATGATGCATCCCGAATCATGAATAGGATGAATAAAAAAGCAAACAGAATTCATGATCATGCTTAG

>Glyma11g36430.2   sequence type=CDS   gene model=Glyma11g36430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGCAAGACAACGTCTCCGGCGACCTCGTTCTCTACAGTAACTTGATTGACCTTGCCCGCAAGTTGTCCGATTATTCCAAGGCCATTTCTATCTTCTCCAGATTGAAAGCCTCCACTATTACCCCCGACCTTATTGCTTATAACTCCATGATCAATGTCTTTGGAAAAGCCAAGCTCTTCCGTGAGGCTCGCCTTCTTCTTCAAGAGATGAGAGACAATGCCGTTCAACCCGACACCGTCAGCTATTCCACCCTTCTTGCCATCTACGTTGACAACCAAAAGTTTGTTGAAGCACTTTCTCTATTTTCCGAAATGAATGAAGCTAAATGCCCTCTTGATCTCACCACTTGTAACATCATGATTGATGTTTATGGCCAGCTTCACATGCCCAAGGAAGCCGACCGCCTCTTCTGGAGCATGAGGAAAATGGGGATTCAACCCAACGTCATTAGCTATAATACGCTCTTGAGGGTTTATGGAGAGGCTGACCTATTTGGGGAAGCCATCCATCTATTCCGTTTGATGCAAAGTAAGGATGTACAACAAAATGTTGTCACCTACAACACTATGATTAATATTTATGGCAAGACTCTCGAGCACGAGAAGGCTACAAATCTCATTCAAGAAATGAATAAAAGGGGTATTGAACCCAATGCCATCACTTATTCAACCATAATATCTATATGGGAGAAGGCAGGGAAACTGGACCGTGCTGCCATCTTGTTTCAGAAATTAAGGAGTTCTGGAGTTCGAATTGATGAGGTTCTTTACCAGACAATGATTGTAGCCTACGAGAGGACGGGTTTAGTTGCTCATGCAAAGCGTCTACTTCATGAGCTCAAGCGACCGGACAACATTCCCAGGGACACTGCAATTGCAATTCTTGCCAGAGCTGGTAGAATTGAAGAGGCTACCTGGGTTTTCCGGCAGGCTTTTGATGCTCGAGAGGTCAAAGATATATCTGTGTTTGGTTGCATGATTAATCTTTTCTCTAAGAACAAAAAGTATGCCAATGTAGTTGAAGTGTTTGAGAAGATGAGAGAGGTGGGATATTTTCCTGATTCTGATGTTATTGCTCTCGTGCTGAATGCTTTTGGAAAGCTGCGTGAATTTGATAAAGCGGATGCTTTATATAGACAGATGCATGAAGAAGGGTGTGTTTTTCCAGATGAAGTTCATTTCCAGATGCTGAGTCTATATGGTGCAAGAAAAGATTTCGTGATGGTAGAATCATTGTTTGAGAAGCTGGATTCCAATCCTAATATCAACAAGAAAGAGTTGCATCTTGTTGTTGCTAGCATTTATGAGAGAGCAGATAGACTTAATGATGCATCCCGAATCATGAATAGGATGAATAAAAAAGCAAACAGAATTCATGATCATGCTTAG

Predicted protein sequences of Glyma11g36430

Limit To All Plant Sequences

>Glyma11g36430.1   sequence type=predicted peptide   gene model=Glyma11g36430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAKDVWTRTSSSNTSRQRSSSSSRRQQQYLDRSVDMEVLLAAIGQTQNEDELYAVMSPYNGRQLSMRFMVSLLSREPDWQRALALLDWINDKALYRPSLFAYNVLLRNVLRAKQWHLAHGLFDEMRQKGLSPDRYTYSTLITCFGKHGLFDSSLFWLQQMEQDNVSGDLVLYSNLIDLARKLSDYSKAISIFSRLKASTITPDLIAYNSMINVFGKAKLFREARLLLQEMRDNAVQPDTVSYSTLLAIYVDNQKFVEALSLFSEMNEAKCPLDLTTCNIMIDVYGQLHMPKEADRLFWSMRKMGIQPNVISYNTLLRVYGEADLFGEAIHLFRLMQSKDVQQNVVTYNTMINIYGKTLEHEKATNLIQEMNKRGIEPNAITYSTIISIWEKAGKLDRAAILFQKLRSSGVRIDEVLYQTMIVAYERTGLVAHAKRLLHELKRPDNIPRDTAIAILARAGRIEEATWVFRQAFDAREVKDISVFGCMINLFSKNKKYANVVEVFEKMREVGYFPDSDVIALVLNAFGKLREFDKADALYRQMHEEGCVFPDEVHFQMLSLYGARKDFVMVESLFEKLDSNPNINKKELHLVVASIYERADRLNDASRIMNRMNKKANRIHDHA*

>Glyma11g36430.2   sequence type=predicted peptide   gene model=Glyma11g36430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEQDNVSGDLVLYSNLIDLARKLSDYSKAISIFSRLKASTITPDLIAYNSMINVFGKAKLFREARLLLQEMRDNAVQPDTVSYSTLLAIYVDNQKFVEALSLFSEMNEAKCPLDLTTCNIMIDVYGQLHMPKEADRLFWSMRKMGIQPNVISYNTLLRVYGEADLFGEAIHLFRLMQSKDVQQNVVTYNTMINIYGKTLEHEKATNLIQEMNKRGIEPNAITYSTIISIWEKAGKLDRAAILFQKLRSSGVRIDEVLYQTMIVAYERTGLVAHAKRLLHELKRPDNIPRDTAIAILARAGRIEEATWVFRQAFDAREVKDISVFGCMINLFSKNKKYANVVEVFEKMREVGYFPDSDVIALVLNAFGKLREFDKADALYRQMHEEGCVFPDEVHFQMLSLYGARKDFVMVESLFEKLDSNPNINKKELHLVVASIYERADRLNDASRIMNRMNKKANRIHDHA*

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