Glyma11g36390 - SoyBase

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Report for Sequence Feature Glyma11g36390

Feature Type:	gene_model
Chromosome:	Gm11
Start:	37892380
stop:	37894497
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g36390

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G55570	AT	Annotation by Michelle Graham. TAIR10: SKU5 similar 12 \| chr1:20757882-20759771 FORWARD LENGTH=555	SoyBase	E_val: 0	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005507	GO-mf	Annotation by Michelle Graham. GO Molecular Function: copper ion binding	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
KOG1263	KOG	Multicopper oxidases	JGI		ISS
PTHR11709	Panther	MULTI-COPPER OXIDASE	JGI		ISS
PTHR11709:SF19	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00394	PFAM	Multicopper oxidase	JGI		ISS
PF07731	PFAM	Multicopper oxidase	JGI		ISS
PF07732	PFAM	Multicopper oxidase	JGI		ISS
UniRef100_B9SBL3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Multicopper oxidase, putative n=1 Tax=Ricinus communis RepID=B9SBL3_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1LN08	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1LN08_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma11g36390

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma11g36390 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g256700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g36390

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma11g36390

Limit To All Plant Sequences

>Glyma11g36390.1   sequence type=CDS   gene model=Glyma11g36390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAAGGGTAATGTTACTGGTATTGTCATGCCTATGGATCGAATCATTATTGACGGTGGTCCGGGGTGAAGACCCTTATCTCTACTTTACATGGAATGTTACTTACGGCACCATCTCTCCATTGGGTATACCCCAACAAGGCATTTTCATCAATGGCCAATTTCCAGGACCCAATATCAATTCCACCAGCAACAACAATCTAGTTATCAATGTCTTCAATAATCTTGATGAGCCATTCCTTTTCACTTGGAATGGCATCCAACACAGAAAGAATTCATGGCAAGATGGGGTTGCAGGAACTAACTGCCCCATTCCTCCAGGGACAAACTTCACGTATCGTATCCAGGTGAAGGACCAAATAGGCAGTTACTTCTACTACCCAAGCACAGCCATGCATAGGGCAGCTGGTGGTTTTGGTGGCCTTCGTGTAAACAGTCGCTTGCTTATTCCTGTGCCTTACCCAGATCCTGAGGATGAATACACCGTTCTCATTGGTGACTGGTACACAAAGAGTCACACCATTCTGAGGAAGTTATTGGATAGCGGGCGCTCTCTTGGTAGGCCTGAAGGTGTCCTTATCAATGGCAAAACAGCTAAAGGTGATGGAAAAGACGAACCACTCTTCACCATGAAGCCTGCAAAGACCTACAAATATAGAATATGCAACGTTGGCCTTAAGAACTCCCTAAACTATAGGATCCAAGGCCATTCCATGAAGCTTGTCGAGATGGAAGGCTCCCACGTGGTGCAAAACATGTACGACTCTCTTGATGTGCATGTAGGGGAATGTTTTTCTGTGCTTGTTACAGCGGACAAGGAACCAAAGGATTACTACATGGTGGCTTCCACACGTTTCACCAAGACTGTTCTAATAGGTAAAGGTATCATTCGTTACACAAATGGTAAGGGTCCTGCCTCACCCGACATCCCCCCGGCTCCAGTGGGTTGGGCTTGGTCTCTTAACCAATTCCATACCTTCCGTTGGAATCTCACCGCTAGTGCCGCCAGGCCCAACCCTCAGGGTTCCTACAAATATGGTCAAATCAACATTACTCGTACTATCAAGCTCGTTAACTCAGTTAGTAAGTCTAACGGTAAGCTTCGTTATGCCCTTAATGGTGTCTCACATGTCGATCCCGAAACTCCACTCAAGCTAGCTGAATACTTTGGAATTTCGGACAAGGTTTTCAAATATGATACTATCCCAGACAACCCATCACCTAACATTGGAAACGCTGTAACCGTACAACCAAATGTTCTTAACATTACCCATCGCAACTTCATCGAAATCATCTTTGAGAACCCTGAAAAAACAATCCAATCATATCACTTGGATGGTTATTCGTTCTTCGTACTCGGCATAGAGCCAGGCACTTGGACCCCAGAGAAGAGGAAGTCCTACAACCTTCTAGATGCCGTGAGCAGACACACAGTTCATGTGTTCCCAAAATGTTGGGCCGCCATCATGTTGACATTCGACAATGCTGGGATGTGGAACCTAAGATCGGATATTGCTGAAAGTCGCTATCTTGGCCAGCAGTTATACATTAGTGTTTTGTCCCCTGAGCATTCTCTTAGAGACGAGTACAATATGCCAGACAGTAACTTGCTTTGTGGTCTTGTAAAGAATTTGCCAAAACCAGCACCATACTCCTAA

Predicted protein sequences of Glyma11g36390

Limit To All Plant Sequences

>Glyma11g36390.1   sequence type=predicted peptide   gene model=Glyma11g36390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKRVMLLVLSCLWIESLLTVVRGEDPYLYFTWNVTYGTISPLGIPQQGIFINGQFPGPNINSTSNNNLVINVFNNLDEPFLFTWNGIQHRKNSWQDGVAGTNCPIPPGTNFTYRIQVKDQIGSYFYYPSTAMHRAAGGFGGLRVNSRLLIPVPYPDPEDEYTVLIGDWYTKSHTILRKLLDSGRSLGRPEGVLINGKTAKGDGKDEPLFTMKPAKTYKYRICNVGLKNSLNYRIQGHSMKLVEMEGSHVVQNMYDSLDVHVGECFSVLVTADKEPKDYYMVASTRFTKTVLIGKGIIRYTNGKGPASPDIPPAPVGWAWSLNQFHTFRWNLTASAARPNPQGSYKYGQINITRTIKLVNSVSKSNGKLRYALNGVSHVDPETPLKLAEYFGISDKVFKYDTIPDNPSPNIGNAVTVQPNVLNITHRNFIEIIFENPEKTIQSYHLDGYSFFVLGIEPGTWTPEKRKSYNLLDAVSRHTVHVFPKCWAAIMLTFDNAGMWNLRSDIAESRYLGQQLYISVLSPEHSLRDEYNMPDSNLLCGLVKNLPKPAPYS*

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