SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G08260 | AT | Annotation by Michelle Graham. TAIR10: DNA polymerase epsilon catalytic subunit | chr1:2590944-2606892 FORWARD LENGTH=2161 | SoyBase | E_val: 0 | ISS |
| GO:0006139 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nucleobase-containing compound metabolic process | SoyBase | N/A | ISS |
| GO:0006260 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA replication | SoyBase | N/A | ISS |
| GO:0006306 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA methylation | SoyBase | N/A | ISS |
| GO:0008283 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell proliferation | SoyBase | N/A | ISS |
| GO:0009793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy | SoyBase | N/A | ISS |
| GO:0045750 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of S phase of mitotic cell cycle | SoyBase | N/A | ISS |
| GO:0048579 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of long-day photoperiodism, flowering | SoyBase | N/A | ISS |
| GO:0051567 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0008622 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: epsilon DNA polymerase complex | SoyBase | N/A | ISS |
| GO:0048046 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: apoplast | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0003887 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA-directed DNA polymerase activity | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| KOG1798 | KOG | DNA polymerase epsilon, catalytic subunit A | JGI | ISS | |
| PTHR10670 | Panther | DNA POLYMERASE EPSILON, CATALYTIC SUBUNIT | JGI | ISS | |
| PF00136 | PFAM | DNA polymerase family B | JGI | ISS | |
| PF03104 | PFAM | DNA polymerase family B, exonuclease domain | JGI | ISS | |
| PF08490 | PFAM | Domain of unknown function (DUF1744) | JGI | ISS | |
| UniRef100_I1LMZ5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: DNA polymerase n=1 Tax=Glycine max RepID=I1LMZ5_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233D57E | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233D57E related cluster n=1 Tax=unknown RepID=UPI000233D57E | SoyBase | E_val: 0 | ISS |
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Glyma11g36142 not represented in the dataset |
Glyma11g36142 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g237700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g36142.1 sequence type=CDS gene model=Glyma11g36142 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGCGGTGGCCGGAGACGTGACGGGAGAGACAGCAGAGCATTGAAGAAGCGGAAGCTGAACCGCACTCCCGAGGAAGAGCTCGAGGCAAAATTTGGATTCGATCTCTTCACAGAAGGCGAAAAGCGTCTCGGATGGTTACTGACTTATGCATCCTCTTCTGTTGACGATGAAGACGGTTACAAAGTATACAGTTGCGTTGATCTCTACTTTGTTGCGCAGGATGGCTCTTCATTCAAGACAAAATTCAGATTTCGGCCTTATTTCTATGTAGCTACAAAGGATAAAATGGAGATTGATGTTGAAGCATACCTGAAAAGACGTTATGAAGGTCAGATTGCAGATGTTGAAATTATAGAGAAAGAAGACCTGGATCTTAAAAACCATTTATCTGGGTTAAGAAAATCTTATTTAAAGCTTTCATTTGATACTGTGCAACAATTGATGGATGTGAAGAGAGACCTGATGCCTACTGTTGAAAGAAATAAGGTCAAGTCTGATGCTGCAGAAGCCTTTTTGTCTATGTCAACAGAAAGAAGAGAACAAAGACCTCAGGATTTTCTAGATTGCATAACCGATCTTCGTGAATATGATGTTCCTTATCATGTTCGCTTTGCCATTGACAATGATATACGGTGTGGCCAGTGGTATGATGTTGGAGTGCCCACTAATAATGGGGTTACACTTGAGAAGAAGACAGATCTTCTGCAGCGTGCTGAAGTTCGTATTTGTGCATTTGACATTGAGACCACAAAACTTCCATTAAAATTTCCTGATGCTGACTATGATTTAATTATGATGATTTCATACATGGTAGATGGTCAAGGGTATTTAATCATAAATAGAGAGTGTGTCGGGGATGATATAGAGGATATAGAGTACACTCCAAAACCAGAGTTTGAAGGGTGTTTTAAGGTGACAAATGTTCAAAATGAGATTGAGCTTCTTAGATTATGGTTTTCTCATATGCAAGATGTGAAACCTGGTATCTATGTGACATATAACGGCGATTTCTTTGATTGGCCATTCCTGGAACGAAGGGCAACCCATCATGGGTTCAAAATGAGTGATGAATTGGGATTCAAATGCGATACGAATCAAGGGGAATGTCGTGCTAGATATGCTTGCCATTTAGATTGTTTTGCTTGGGTTAAACGTGATAGTTATCTCCCTCAGGGCAGCCAAGGCCTGAAGGCTGTTACAAAAGCAAAGTTGGGTTATGATCCATTGGAGGTGAACCCTGAGGACATGGTTTGCTTTGCAAAGGAAAAGCCACAGATGATGGCCTCCTATTCTGTTTCTGACGCAGTGGCAACTTATTACTTATATACAACTTATGTTCATCCCTTTATTTTCTCTCTTGCAACCATTATACCCATGTCACCAGATGAGGTTTTGCGCAAAGGTAGTGGAACCCTCTGTGAAATGTTGCTTATGGTGCAGGCATACAAGGCTAATGTTATATGTCCTAACAAACACCAATCTGATCCAGAGAAGTTTTATAACAATCATCTTCTTGAGAGTGAGACGTACATTGGTGGTCATGTGGAGTGTCTTGAAAGTGGTGTATTCAGATCTGATATTCCATCTAGTTTTAAACTCGAGCCATCCGCCTATCAGCAACTTATCAACAACCTTGATCGAGATCTACAGTATGCTATAACAGTGGAGGGTAAGATGGATTTGGAATTTGTTTCTAATTATGATGAAGTAAAGAATGCAATCATGGAAAAGCTTGTAAAATTACGAGAAGCACCAATACGTGAAGAATGTCCCCTCATTTATCATCTGGATGTAGCTGCTATGTATCCAAACATAATTTTAACAAACCGACTTCAGCCACCGTCAATTGTTACGGAGGAAGTTTGCACTGCATGTGATTTTAATCGTCCCGGAAAGACTTGCCTACGCAAACTTGAGTGGGTTTGGCGTGGAGAAACATTCATGGCTAAGAAAAGTGACTATTATGCTTTAAAGACACAGATTGAATCAGAGTTTGTTGATGATTCTGAGAAGAACAACAGAGCCTTATCTCACTATTCTGAGAAATCATCAAAATCTTTTCTTGACCTTCCCAAGGCAGAGCAACAATCAAGACTGAAAGAGCGTTTAAAGAAATATTGCCAGAAGGCATATAAACGGGTACTTGACAAACCTGTTACCGAACTTCGTGAAGCAGGAATCTGCATGCGTGAAAATCCATTTTATGTTGACACTGTTCGCAGTTTCCGGGATAGAAGATATGAATATAAAGGTCTCAATAAGGTTTGGAAGGGAAAACTGTCAGAGGCCAAGGCTAGTGGAAATTCTATAAAGATCCAGGAAGCACAGGATATGGTTGTGCTTTATGATTCATTGCAACTTGCTCACAAGTGTATACTTAATTCCTTTTATGGATACGTCATGCGCAAGGGTGCAAGATGGTACTCCATGGAAATGGCTGGAGTAGTGACATATACTGGTGCAAAAATCATTCAGAATGCTCGCTTGCTAGTAGAGAAAATAGGAAAACCACTTGAACTAGACACTGATGGTATCTGGTGTGCACTACCTGGATCTTTTCCAGAAAATTTCACTTTTAAAACAAGAGACCCAAAGAAGAAGTTTACAATCTCATACCCATGTGTTATGCTTAATGTTGATGTGGCAATAAATAACTCAAATGATCAATACCAGACACTCACAGATCCAATCAGGAAAACGTATACAACTCGCAGTGAATGCTCTATCGAATTTGAGGTGGACGGACCGTACAAGGCAATGATCCTTCCCGCTTCCAAGGAAGAAGGAATTTTAATTAAGAAGCGATATGCCGTTTTTAATGATGATGGAACCCTTGCAGAGCTTAAAGGTTTTGAGATCAAACGCAGAGGTGAACTGAAGCTAATAAAAGTTTTCCAGGCTGAACTTTTTGACAAGTTTCTCCATGGTTCAACTTTAGAGGAATGCTATTCAGCTGTTGCTTCGGTGGCAAATGGCTGGCTTGATCTTCTTGATAACCAGGGAAAGGATATTGCAGACAGTGAGTTGCTTGATTATATATCAGAATCAAGTACCATGAGCAAATCTTTCGCTGATTATGGTCTGCAGAAGTCTTGTGCTGTTGCCACTGCTAGACGTCTGGCTGACTTTCTTGGCGATACAATGGTCAAAGATAAAGGTCTTCGATGTCAGTACATAGTAGCAAGTGAACCCAAGGGCACGCCAGTAAGTGAGCGTGCTGTTCCTGTGGCAATATTTGAAACTGATGCTGAGGTAATGAAGTTCTATGTCCGAAAATGGTGCAAGGTCTCATCAGATGTTGACATTCGATCCATAATTGACTGGTCCTATTACAAGCAGCGGCTTAGTTCTGCAATTCAAAAAATTATCACTATTCCTGCTGCAATGCAAAAGGTTGCAAATCCCGTCCCTAGGGTGGTTCATCCTGATTGGTTGCATAAGAAGGTCCGTGAGAAGGAGGACAAGTTTCGCCAACGGAAATTAGTTGATGCCTTTAAATCAATGAATAGGAATGAGCACTCAAAAAAGCATAATGACTCAAATCGTGTCCCTCTTGTGATTGATGATGATATTGTTAATGAGTTGGAGGACTTTGGAAACAAGGACAGGAGTTCTACATGCAGGCCTAGACCAATTATACGGCATTATGAAGCTAATAATGAACGACATTCAGGGAAGCTCAATGATCAAGATGTAGAGCAACAGCATAATAAACCATTACAACAAAAAGTTGACAAAAATGTAGATTATGAAGGATGGCTTCAAATAAAGAAGCAAACGTGGAAAGATATTCTGGAAAGGAGAAAGAAGCGAAGATTGGAGAATTCAAAGAAATCTGACCGTGTAAATGGTGTTCTTCAACAAATGAATGGTAAGGGGAATCAGGGCAGAAGTCATGTCAGTTCATATCTTAAAAGGCTTGAGGTAGACTTAACAAAGCGTCACTGGCAGATAATACAACTAGTTCCCAGTTCACTGATAGGCCACTTTTTTGCTTGGGTTGTTGTTGATGGGAGTATGCATAAGATTCCTGTTTCTGTTCCTAGAGTCTTTTACCTCAATTCAAGATCAGACATTACTGAAGAATTTATGGGTAAACGTGTTAACAAGACTCTTCCTCATGGACGGCATAGTTATAACTTGTATGAGGTCTCAATTAATGAAATTCAATATGGGGAAGCAAGCAAAAAACTTGCAGCTCTTCTAGCAGATCCTGATGTTGAGGGAGTATATGAAACTAAGGTGCCACTGGAATTTAATGCAATTGTCCAGCTTGGTTGTGTATGTAAGGTGGACAAAACTGCTAATAAACGTAGTCTACAAGAACCATGGAATTTGAGTGAATTGCACATGAAGACCACAGTTGAATGCGCTTATCTTGAACAATCTATATCCTTCTTTTATTTTTACCATAGCATCTCTGAGGGACGGGCTATATATGTTGGATATTTTCCTGCATTAAAAGCAATAACTGTTGTGGTAGTTAATCCCTATCAAAACAAAGATTTATCACCGACTTTTCTTGAAAGACAATTTCACGATGCTTGCCAGTCTTTGTCTATTGATTCACCTCCGAGGAATGGCATTAATTTCAAGTTGGACTATGTTGCACATGTCAAGGATGCTGAAGCAGTGATGCAAAGAGCAATAAATGGTCACAGGGAAAATCACATGCCTATGGTTGCTGTCATTGAATGCCCAAATGTTCAATTAGTAAAATTGGGCATCCAAGTTCTGGATAATTTTCCATGCCTGAGTGTTCCTTATAATGCACGTGATAGTCAGTACCAGGTAAAAATGTTTTTAAACAAGTGGTCCTATTCAATCCAATGGCTAAATCAAAGAATTGCTCTCTCAAGATATGCCCATGTACCGTTGGGGAACTTTGAACTTGACTGGCTTATATTTATTGCGGATATCTTCTTTTCAAGAGCATTGCATGATAATCAACAGGTACTTTGGATATCTGACGATGGCCTTCCAGATTTAGGTGGAATTAATGGTGAACAGAACTGTTTTGTGGATGAGGTCCAACAACCTGTTCTTACATATCCTGGAGCTTATAGAAACGTAACTGTGGAGCTAAAGATACACCACCTGGCTGTAAATGCTCTTCTCAAGTACAACCTAGTTAATGAAATGGAAGGAGGCACTCTATTGGGATTTGGTCATGAACTTGATTCTGGAGCATTTTCCACAAATGATCAAAATGGTTTTGATGAGTCTACCTCATGTGCACAAGCCTTTCGAGTCCTTAAACAGTTGATCCAGCGGTGCCTAGCAGATGCAGTTACATCCGGAAATGTTTATGCTGATTCAATTTTGCAACATCTGTATAGATGGCTTTGCAGCCCTAAATCAAAACTTCATGATCCAGCTCTCCACCAGTTACTCCACAAGGTCATGCAAAAGGTCTTCGCATTGTTGTTGGCAGAGTTCCGCAAGTTAGGTGCTATGATTGTATTTGCAAACTTTACAAAGATTGTTATAGACACCGGGAAATATGATCTGTCTAGAGCCAAAGCTTACTGTGATAGTTTGTTAAGAACTATACAATCAAGAGATCTATTTGAATGGGTTGAGCTTGAACCACTGCAGTTCTGGTGCTCGTTGCTATTCATGGATCAGTATAACTATGGTGGAATACCAACAAAATCTGATGAAGCTCTAAATGATGAATCTCAAGTGGACATTATATCTAGCTGGAATATTGCTGAATACTTGCCGAAAAAAATCCAAGACCATTTTGTTTTCATCGTTTCTCAATTCATGTATATTCCCTGGAATTATGCAAAAAAACAAGCACAAATCAGGGCCTCATTGCAGAATGGTGACTCCTGTACCCCATCAATTAACATTGGAGCTGCAGAGGCTTTTGAATCAGAAGTAACAGAATTTACCAAAGACCAGATTAGCTCTTATTTCACACACAAACTGCTAGGAATTGTTCACGATATTGGTCTTCATATGAAGGGTATGAACAGATCAGAAAACAACCAGAGTACATCAGGCCTTCCTCAACTTACGGGTGATGTCCATAGAGGGGATGCTTCCTTGGAATTTATCAAGCATGTTTGTGCTGTCCTCGCCCTTGACCACAGTGTGCAGCATGAAGTTTTGGTAATAATTGTTTGA
>Glyma11g36142.1 sequence type=predicted peptide gene model=Glyma11g36142 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSGGRRRDGRDSRALKKRKLNRTPEEELEAKFGFDLFTEGEKRLGWLLTYASSSVDDEDGYKVYSCVDLYFVAQDGSSFKTKFRFRPYFYVATKDKMEIDVEAYLKRRYEGQIADVEIIEKEDLDLKNHLSGLRKSYLKLSFDTVQQLMDVKRDLMPTVERNKVKSDAAEAFLSMSTERREQRPQDFLDCITDLREYDVPYHVRFAIDNDIRCGQWYDVGVPTNNGVTLEKKTDLLQRAEVRICAFDIETTKLPLKFPDADYDLIMMISYMVDGQGYLIINRECVGDDIEDIEYTPKPEFEGCFKVTNVQNEIELLRLWFSHMQDVKPGIYVTYNGDFFDWPFLERRATHHGFKMSDELGFKCDTNQGECRARYACHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYDPLEVNPEDMVCFAKEKPQMMASYSVSDAVATYYLYTTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQAYKANVICPNKHQSDPEKFYNNHLLESETYIGGHVECLESGVFRSDIPSSFKLEPSAYQQLINNLDRDLQYAITVEGKMDLEFVSNYDEVKNAIMEKLVKLREAPIREECPLIYHLDVAAMYPNIILTNRLQPPSIVTEEVCTACDFNRPGKTCLRKLEWVWRGETFMAKKSDYYALKTQIESEFVDDSEKNNRALSHYSEKSSKSFLDLPKAEQQSRLKERLKKYCQKAYKRVLDKPVTELREAGICMRENPFYVDTVRSFRDRRYEYKGLNKVWKGKLSEAKASGNSIKIQEAQDMVVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLVEKIGKPLELDTDGIWCALPGSFPENFTFKTRDPKKKFTISYPCVMLNVDVAINNSNDQYQTLTDPIRKTYTTRSECSIEFEVDGPYKAMILPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQAELFDKFLHGSTLEECYSAVASVANGWLDLLDNQGKDIADSELLDYISESSTMSKSFADYGLQKSCAVATARRLADFLGDTMVKDKGLRCQYIVASEPKGTPVSERAVPVAIFETDAEVMKFYVRKWCKVSSDVDIRSIIDWSYYKQRLSSAIQKIITIPAAMQKVANPVPRVVHPDWLHKKVREKEDKFRQRKLVDAFKSMNRNEHSKKHNDSNRVPLVIDDDIVNELEDFGNKDRSSTCRPRPIIRHYEANNERHSGKLNDQDVEQQHNKPLQQKVDKNVDYEGWLQIKKQTWKDILERRKKRRLENSKKSDRVNGVLQQMNGKGNQGRSHVSSYLKRLEVDLTKRHWQIIQLVPSSLIGHFFAWVVVDGSMHKIPVSVPRVFYLNSRSDITEEFMGKRVNKTLPHGRHSYNLYEVSINEIQYGEASKKLAALLADPDVEGVYETKVPLEFNAIVQLGCVCKVDKTANKRSLQEPWNLSELHMKTTVECAYLEQSISFFYFYHSISEGRAIYVGYFPALKAITVVVVNPYQNKDLSPTFLERQFHDACQSLSIDSPPRNGINFKLDYVAHVKDAEAVMQRAINGHRENHMPMVAVIECPNVQLVKLGIQVLDNFPCLSVPYNARDSQYQVKMFLNKWSYSIQWLNQRIALSRYAHVPLGNFELDWLIFIADIFFSRALHDNQQVLWISDDGLPDLGGINGEQNCFVDEVQQPVLTYPGAYRNVTVELKIHHLAVNALLKYNLVNEMEGGTLLGFGHELDSGAFSTNDQNGFDESTSCAQAFRVLKQLIQRCLADAVTSGNVYADSILQHLYRWLCSPKSKLHDPALHQLLHKVMQKVFALLLAEFRKLGAMIVFANFTKIVIDTGKYDLSRAKAYCDSLLRTIQSRDLFEWVELEPLQFWCSLLFMDQYNYGGIPTKSDEALNDESQVDIISSWNIAEYLPKKIQDHFVFIVSQFMYIPWNYAKKQAQIRASLQNGDSCTPSINIGAAEAFESEVTEFTKDQISSYFTHKLLGIVHDIGLHMKGMNRSENNQSTSGLPQLTGDVHRGDASLEFIKHVCAVLALDHSVQHEVLVIIV*
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