Glyma11g36127 - SoyBase

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Report for Sequence Feature Glyma11g36127

Feature Type:	gene_model
Chromosome:	Gm11
Start:	37648555
stop:	37650044
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g36127

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G16000	AT	Annotation by Michelle Graham. TAIR10: MAR binding filament-like protein 1 \| chr3:5431041-5433613 REVERSE LENGTH=726	SoyBase	E_val: 4.00E-66	ISS
GO:0000023	GO-bp	Annotation by Michelle Graham. GO Biological Process: maltose metabolic process	SoyBase	N/A	ISS
GO:0000272	GO-bp	Annotation by Michelle Graham. GO Biological Process: polysaccharide catabolic process	SoyBase	N/A	ISS
GO:0005982	GO-bp	Annotation by Michelle Graham. GO Biological Process: starch metabolic process	SoyBase	N/A	ISS
GO:0006098	GO-bp	Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt	SoyBase	N/A	ISS
GO:0006655	GO-bp	Annotation by Michelle Graham. GO Biological Process: phosphatidylglycerol biosynthetic process	SoyBase	N/A	ISS
GO:0009664	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall organization	SoyBase	N/A	ISS
GO:0009902	GO-bp	Annotation by Michelle Graham. GO Biological Process: chloroplast relocation	SoyBase	N/A	ISS
GO:0010027	GO-bp	Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization	SoyBase	N/A	ISS
GO:0010075	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of meristem growth	SoyBase	N/A	ISS
GO:0019252	GO-bp	Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process	SoyBase	N/A	ISS
GO:0019288	GO-bp	Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway	SoyBase	N/A	ISS
GO:0019760	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucosinolate metabolic process	SoyBase	N/A	ISS
GO:0034660	GO-bp	Annotation by Michelle Graham. GO Biological Process: ncRNA metabolic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009534	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid	SoyBase	N/A	ISS
GO:0009535	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane	SoyBase	N/A	ISS
GO:0042646	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid nucleoid	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
UniRef100_G7JKW2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: MAR-binding filament-like protein 1-1 n=1 Tax=Medicago truncatula RepID=G7JKW2_MEDTR	SoyBase	E_val: 4.00E-130	ISS
UniRef100_UPI000233CE6C	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233CE6C related cluster n=1 Tax=unknown RepID=UPI000233CE6C	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma11g36127

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g36127 not represented in the dataset	Glyma11g36127 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma11g36127 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g237600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g36127

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma11g36127

Limit To All Plant Sequences

>Glyma11g36127.1   sequence type=CDS   gene model=Glyma11g36127   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGTTGAATAGTAAATTTTGCTTATCGTATTTGTGCTTTGGATGTTTAGTGTGTTCTAAACTTTGTAGTTTCTATGGACAGAAAGCACCTGAAGTGGACCAACCATCAAATTCCTTTCTGCTTCTCTTGAATGGAATTGGAGTATTTTCTTCCGGTGTGTTGGGTGCTCTCTATAAACTTGCTCAGAAAGAAAAGTCCACTGTTGTTGCAACAATAGAAACAGTTTTAAGAGAAAAAGAAGAGGAGCTTCATCAGCTAAAGGATCAGTTTGAACTTGCCCTAGGTGAAGCAAGCAAAAGCCAGATCGTCATTGCTGATTTATCCCAAGAAAGAGATGATTTGAAGGAGGCTCTAGATAATGAATCTAGCAAGGTGAATCATTTGAAGCATGAACTCCAAGTTACCCAGGAGAATCTTGCAAAATCAAGAAATGAGTCTGCTGAATTGGAAAACCTTCTAACTTTGTCAAATAAACTGTGCAAAGAGCTCGAGCTCGAGGTCTCTAAGCTCTCGTCTGAGCTCACTGAGGTTAATGAATCGCTACAGAGAAACCTTGATGATCTTACAACTGCCAAGGAACACTTGAGGGAAGCACAAGCAGAGCTGCAAGGTGTGTCAAAAGAATTGACAGCTGCTCTTGAAAAGAATGATAGCCTACAAAAAGAATTAGTTGAAGTCTACAAAAAGGCTGAAAGCACAGCAGAGGATTTGAAGGAACAAAAACAGTTAGAGCAGCAAGTCTCAAAAGACAAGGAGTCCCGAAAATCTCTTGAGGGGGACCTGGAGGAGGCGACCAAATCATTAGATGAAATGAACCGAAATGCGGTGATCCTTTCTGGGGAACTACAGAGAGCTAATTCTCTTGTTTCTAGCCTTGAAAAAGAGAAAGATGTGCTTATTAAGTTCCTAAACGACCAAAGAAATGCATGCAAAGAGGCCCAAGACAACATTGAAGATGCTCATAACCTTATCATGAAACTTGGCAAAGAAAGAGAGAATTTAGAGAAAAAAGGTAAGAAATTTGAGGAGGAATTGGCTTCTGCCAAGGGTGAGATATTGTGCTTGAAGAGTCGAATCAATTCTTCAAAAGTTGCTGTTAACAATGACCAAGTGCAGAAAGATGGAGGTGAAAACAAAGTGCAGAAAGATGGAGGTGAAAAAAAGGTCAATTCTTCAAAAGTTGCGGTTAACAGTGAGCAAGCACAGAAAGATGAAGGTGAAAACAAGGTTACTGTAAGCGCACGGAAGACTGTCAGAAGAAGAAAGGCTAATCCACAATAA

Predicted protein sequences of Glyma11g36127

Limit To All Plant Sequences

>Glyma11g36127.1   sequence type=predicted peptide   gene model=Glyma11g36127   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLLNSKFCLSYLCFGCLVCSKLCSFYGQKAPEVDQPSNSFLLLLNGIGVFSSGVLGALYKLAQKEKSTVVATIETVLREKEEELHQLKDQFELALGEASKSQIVIADLSQERDDLKEALDNESSKVNHLKHELQVTQENLAKSRNESAELENLLTLSNKLCKELELEVSKLSSELTEVNESLQRNLDDLTTAKEHLREAQAELQGVSKELTAALEKNDSLQKELVEVYKKAESTAEDLKEQKQLEQQVSKDKESRKSLEGDLEEATKSLDEMNRNAVILSGELQRANSLVSSLEKEKDVLIKFLNDQRNACKEAQDNIEDAHNLIMKLGKERENLEKKGKKFEEELASAKGEILCLKSRINSSKVAVNNDQVQKDGGENKVQKDGGEKKVNSSKVAVNSEQAQKDEGENKVTVSARKTVRRRKANPQ*

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