SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G65180 | AT | Annotation by Michelle Graham. TAIR10: ENTH/VHS family protein | chr5:26045625-26047806 FORWARD LENGTH=439 | SoyBase | E_val: 2.00E-146 | ISS |
| GO:0007059 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chromosome segregation | SoyBase | N/A | ISS |
| GO:0007062 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sister chromatid cohesion | SoyBase | N/A | ISS |
| GO:0007129 | GO-bp | Annotation by Michelle Graham. GO Biological Process: synapsis | SoyBase | N/A | ISS |
| GO:0007131 | GO-bp | Annotation by Michelle Graham. GO Biological Process: reciprocal meiotic recombination | SoyBase | N/A | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0010332 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to gamma radiation | SoyBase | N/A | ISS |
| GO:0031048 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chromatin silencing by small RNA | SoyBase | N/A | ISS |
| GO:0032204 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of telomere maintenance | SoyBase | N/A | ISS |
| GO:0032504 | GO-bp | Annotation by Michelle Graham. GO Biological Process: multicellular organism reproduction | SoyBase | N/A | ISS |
| GO:0033044 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of chromosome organization | SoyBase | N/A | ISS |
| GO:0042138 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meiotic DNA double-strand break formation | SoyBase | N/A | ISS |
| GO:0043247 | GO-bp | Annotation by Michelle Graham. GO Biological Process: telomere maintenance in response to DNA damage | SoyBase | N/A | ISS |
| GO:0045132 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meiotic chromosome segregation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG2669 | KOG | Regulator of nuclear mRNA | JGI | ISS | |
| PTHR12460 | Panther | UNCHARACTERIZED | JGI | ISS | |
| PF04818 | PFAM | Protein of unknown function, DUF618 | JGI | ISS | |
| UniRef100_G7J4E0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Regulation of nuclear pre-mRNA domain-containing protein 1B n=1 Tax=Medicago truncatula RepID=G7J4E0_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233D109 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233D109 related cluster n=1 Tax=unknown RepID=UPI000233D109 | SoyBase | E_val: 0 | ISS |
|
Glyma11g36110 not represented in the dataset |
Glyma11g36110 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma18g02321 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g237400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g36110.2 sequence type=transcript gene model=Glyma11g36110 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AATAAAAAAATGTATTTGAAAAATAAAAGGTTGTTAGTATTACGGAGTATCGTATTCGTATCATCCATCCTGCGGCGTTGAAACAATTTTCATGGTTTTGCGCCAAATAAAATAGGCGTGTGAACCCCAAACTTAAAACCTTTTCTCTTCAAGTAACGCGTTTTTTTTTCTTTCTTTTCCCCCTCTTTTTTATCTGCAAAATTTAGTTATCCGTTTTTAGGGTTTTTCGAAATCCACAACACCACGCACGAATCCAATACTTCAACGTCTCTATCCCTCTGTTTCTTTATCGCTCTGCCATTTTTTCTTTTTGATACAAGATCTCTCCGTGAATCTGATTTGCCCAAAACGTGGTCGTTTCAATTAGTCCCGATTCCCCAGCATTGTGGCTACTACTATTTCTCTGCTCAATTTCTTCTCCTTTATGCTTGCATTAGCTCAATTTTTCGGATTCGTTGTTTTTCAATCGAACCTAATCTTTTCACATTTTTAGCTCGTTGTTATTGATATTGAAGCTCGTTTCGGTCCCAATTCTGTTATAGGGTTTTAGTGTTCGAAAATTGAGATGCTACATGGTTTGTTTTCGATAAAAGGTTTCAATGGGGCATAGGGTTTTGCTGAAATTATATCTGGTGAGGGGAAAGAGGTGAAGAACATGAATGGCGTTTTCAGCGAGCAGATACTTGCAGACAAGCTGTCCAAGCTTAATAACACCCAACAATGCATTGAAACTTTATCACATTGGTGTATATTTCACCGGAGCAAAGCTGAACTGTTTGTTGCCACTTGGAAAAAACAATTTGACAAATCAGAGATGATTCAAAGGATCCCTCTTTTGTATCTTGCAAATGATATTCTGCAGAACAGTAAGCATAAAGGGAATGAATTTGTGACAGAGTTTTGGAAGGTTCTTCCTGCAGCACTTAAAGATGTTATCAAGAAAGGTGATGATCATGGAACGCGTGTGGTATCTAGATTGATTGAAATATGGGAGCAAAGGAGAGTATTTGGATCCCGGGCTAGGAACCTTAAAGATTTGATGCTTGGAGAAGATGCACCTCCACCATTGGAATTTGGCAAAAAGCGATCACGTTCTGTAAGAATTGTGAAAAGGGATTCTCACTCCATCAAATCGAAACTGTCCATAGGAGGTACAGCGGAAAAAATAGTGTCTGCATTTCATTTGGTGCTCAGTGAGCAATCCGTTGAAGATGCAGAGATAAGTAAATGCAAGTCTTCTGTTCAGCGTGTGAGGAAGATGGAAAAAGATGTTGATACTGCATGCTCTGTTGCCAAAGATCCCAAGAGAAAAACTTTGGCAAAGGAACTAGAGGAGGAGGAAAATATTTTGAAACGATGCGTAGAAAAACTTAAATTAGTTGAAGCAAGTAGAGTAGCCCTTGTGTCTCAGTTAAAAGAAGCTTTGCATGAGCAGGAATCTGAACTAGAGAATGTTCGTACACAGATGCAGGTTGCCCAAGCACAAATAGAAGAGGCTTGCAACATGCGGAGGATACTTGATAATGAAGATTTTTCTCAGAAAGTGTCCGTTGCCAAGTCGGCTGCAGCAATTGCTGCTGAGGTTGCAGATAAGCTTGCAGCTTCTTCGTCATCGCAGTTGATCATGACTTCTGTTCTGTCAACATTTGCAGCAGAAGAGGCAAAAAATGCTGGTCTAACTTCTGAGTCCACATCAAAACACGAGATTCCAATGACTAGCTCAGATCCCCATATGTTTAGGTCCCCACAACAGTTGATTGCCGCACCAAACCATTCATATCCTTCAGTTTTGGTAGCCCAACCACCACCCTTGCAAAATGCTGCTCCTTCATCACAAGGTCAATTTCACATGCTTAGTAATCCGCCATCCCAGCAGTTCGTGCAGTCAACTGGAGGGATCATCACTCCATATGGTTATGGTAGCATCCCACCATTACCGCCCGCACCCCAACTGCCAACTCATGTTGGGGCTATGGTGCCTTTGACACATCAGACCCTGCAAATAACTCCACATCAACAAATACCAATAACACAGCAAGCCCCCGCACCTCCTACTTTCCGACCACTTCAACCACCAGGAATGGTGTACTATACTAATCATCAGCATTCGATACATGCTACCCTGGGACGGGAGCTGGCAAATGTTGGAAGCAAGACTATCACATCCCTGGGACGTGAAACTCTCTTGCCCAATATTTTAACTGAGTTACTGATTCAGTCGACCGACCCTAATGCGAACGGGGATCTCATGAACCAGGCACTGATACCATCACCCCCCAAAAAAGCAAAAAACAAAAGCAATAGAAGAACATGATAAGAATGAAATAAACAAGTGTTTTGCCGGAAAACTTTTAATATAATGTCCTTATAATTGGCCAATCAAATAATTTATCTATTACAATGCTCCTGCGCGTAAAGATTGGTGATCGTAAAAACCATTCAAACTAGCTGGGCGTTTCTGTACCCAGTCCCCGATTTTGCAAAGGAAATTTAACTAAAGAATTAGGAGTTTTTATGAGTTGGAATAGTTTGAGTTTGTGGCTAGGTAAAGTCTAACCTGATGATATTTAATTAAGTTGGTTTGTTTCAGGTTTAGAAAATACTTTTTGGCAACTTGAAACCAAAATAATTTAATTAAGATCGTGTAGTTTTG
>Glyma11g36110.1 sequence type=CDS gene model=Glyma11g36110 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAATGGCGTTTTCAGCGAGCAGATACTTGCAGACAAGCTGTCCAAGCTTAATAACACCCAACAATGCATTGAAACTTTATCACATTGGTGTATATTTCACCGGAGCAAAGCTGAACTGTTTGTTGCCACTTGGAAAAAACAATTTGACAAATCAGAGATGATTCAAAGGATCCCTCTTTTGTATCTTGCAAATGATATTCTGCAGAACAGTAAGCATAAAGGGAATGAATTTGTGACAGAGTTTTGGAAGGTTCTTCCTGCAGCACTTAAAGATGTTATCAAGAAAGGTGATGATCATGGAACGCGTGTGGTATCTAGATTGATTGAAATATGGGAGCAAAGGAGAGTATTTGGATCCCGGGCTAGGAACCTTAAAGATTTGATGCTTGGAGAAGATGCACCTCCACCATTGGAATTTGGCAAAAAGCGATCACGTTCTGTAAGAATTGTGAAAAGGGATTCTCACTCCATCAAATCGAAACTGTCCATAGGAGGTACAGCGGAAAAAATAGTGTCTGCATTTCATTTGGTGCTCAGTGAGCAATCCGTTGAAGATGCAGAGATAAGTAAATGCAAGTCTTCTGTTCAGCGTGTGAGGAAGATGGAAAAAGATGTTGATACTGCATGCTCTGTTGCCAAAGATCCCAAGAGAAAAACTTTGGCAAAGGAACTAGAGGAGGAGGAAAATATTTTGAAACGATGCGTAGAAAAACTTAAATTAGTTGAAGCAAGTAGAGTAGCCCTTGTGTCTCAGTTAAAAGAAGCTTTGCATGAGCAGGAATCTGAACTAGAGAATGTTCGTACACAGATGCAGGTTGCCCAAGCACAAATAGAAGAGGCTTGCAACATGCGGAGGATACTTGATAATGAAGATTTTTCTCAGAAAGTGTCCGTTGCCAAGTCGGCTGCAGCAATTGCTGCTGAGGTTGCAGATAAGCTTGCAGCTTCTTCGTCATCGCAGTTGATCATGACTTCTGTTCTGTCAACATTTGCAGCAGAAGAGGCAAAAAATGCTGGTCTAACTTCTGAGTCCACATCAAAACACGAGATTCCAATGACTAGCTCAGATCCCCATATGTTTAGGTCCCCACAACAGTTGATTGCCGCACCAAACCATTCATATCCTTCAGTTTTGGTAGCCCAACCACCACCCTTGCAAAATGCTGCTCCTTCATCACAAGGTCAATTTCACATGCTTAGTAATCCGCCATCCCAGCAGTTCGTGCAGTCAACTGGAGGGATCATCACTCCATATGGTTATGGTAGCATCCCACCATTACCGCCCGCACCCCAACTGCCAACTCATGTTGGGGCTATGGTGCCTTTGACACATCAGACCCTGCAAATAACTCCACATCAACAAATACCAATAACACAGCAAGCCCCCGCACCTCCTACTTTCCGACCACTTCAACCACCAGGAATGGTGTACTATACTAATCATCAGCATTCGATACAGTAA >Glyma11g36110.2 sequence type=CDS gene model=Glyma11g36110 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAATGGCGTTTTCAGCGAGCAGATACTTGCAGACAAGCTGTCCAAGCTTAATAACACCCAACAATGCATTGAAACTTTATCACATTGGTGTATATTTCACCGGAGCAAAGCTGAACTGTTTGTTGCCACTTGGAAAAAACAATTTGACAAATCAGAGATGATTCAAAGGATCCCTCTTTTGTATCTTGCAAATGATATTCTGCAGAACAGTAAGCATAAAGGGAATGAATTTGTGACAGAGTTTTGGAAGGTTCTTCCTGCAGCACTTAAAGATGTTATCAAGAAAGGTGATGATCATGGAACGCGTGTGGTATCTAGATTGATTGAAATATGGGAGCAAAGGAGAGTATTTGGATCCCGGGCTAGGAACCTTAAAGATTTGATGCTTGGAGAAGATGCACCTCCACCATTGGAATTTGGCAAAAAGCGATCACGTTCTGTAAGAATTGTGAAAAGGGATTCTCACTCCATCAAATCGAAACTGTCCATAGGAGGTACAGCGGAAAAAATAGTGTCTGCATTTCATTTGGTGCTCAGTGAGCAATCCGTTGAAGATGCAGAGATAAGTAAATGCAAGTCTTCTGTTCAGCGTGTGAGGAAGATGGAAAAAGATGTTGATACTGCATGCTCTGTTGCCAAAGATCCCAAGAGAAAAACTTTGGCAAAGGAACTAGAGGAGGAGGAAAATATTTTGAAACGATGCGTAGAAAAACTTAAATTAGTTGAAGCAAGTAGAGTAGCCCTTGTGTCTCAGTTAAAAGAAGCTTTGCATGAGCAGGAATCTGAACTAGAGAATGTTCGTACACAGATGCAGGTTGCCCAAGCACAAATAGAAGAGGCTTGCAACATGCGGAGGATACTTGATAATGAAGATTTTTCTCAGAAAGTGTCCGTTGCCAAGTCGGCTGCAGCAATTGCTGCTGAGGTTGCAGATAAGCTTGCAGCTTCTTCGTCATCGCAGTTGATCATGACTTCTGTTCTGTCAACATTTGCAGCAGAAGAGGCAAAAAATGCTGGTCTAACTTCTGAGTCCACATCAAAACACGAGATTCCAATGACTAGCTCAGATCCCCATATGTTTAGGTCCCCACAACAGTTGATTGCCGCACCAAACCATTCATATCCTTCAGTTTTGGTAGCCCAACCACCACCCTTGCAAAATGCTGCTCCTTCATCACAAGGTCAATTTCACATGCTTAGTAATCCGCCATCCCAGCAGTTCGTGCAGTCAACTGGAGGGATCATCACTCCATATGGTTATGGTAGCATCCCACCATTACCGCCCGCACCCCAACTGCCAACTCATGTTGGGGCTATGGTGCCTTTGACACATCAGACCCTGCAAATAACTCCACATCAACAAATACCAATAACACAGCAAGCCCCCGCACCTCCTACTTTCCGACCACTTCAACCACCAGGAATGGTGTACTATACTAATCATCAGCATTCGATACATGCTACCCTGGGACGGGAGCTGGCAAATGTTGGAAGCAAGACTATCACATCCCTGGGACGTGAAACTCTCTTGCCCAATATTTTAACTGAGTTACTGATTCAGTCGACCGACCCTAATGCGAACGGGGATCTCATGAACCAGGCACTGATACCATCACCCCCCAAAAAAGCAAAAAACAAAAGCAATAGAAGAACATGA
>Glyma11g36110.1 sequence type=predicted peptide gene model=Glyma11g36110 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNGVFSEQILADKLSKLNNTQQCIETLSHWCIFHRSKAELFVATWKKQFDKSEMIQRIPLLYLANDILQNSKHKGNEFVTEFWKVLPAALKDVIKKGDDHGTRVVSRLIEIWEQRRVFGSRARNLKDLMLGEDAPPPLEFGKKRSRSVRIVKRDSHSIKSKLSIGGTAEKIVSAFHLVLSEQSVEDAEISKCKSSVQRVRKMEKDVDTACSVAKDPKRKTLAKELEEEENILKRCVEKLKLVEASRVALVSQLKEALHEQESELENVRTQMQVAQAQIEEACNMRRILDNEDFSQKVSVAKSAAAIAAEVADKLAASSSSQLIMTSVLSTFAAEEAKNAGLTSESTSKHEIPMTSSDPHMFRSPQQLIAAPNHSYPSVLVAQPPPLQNAAPSSQGQFHMLSNPPSQQFVQSTGGIITPYGYGSIPPLPPAPQLPTHVGAMVPLTHQTLQITPHQQIPITQQAPAPPTFRPLQPPGMVYYTNHQHSIQ* >Glyma11g36110.2 sequence type=predicted peptide gene model=Glyma11g36110 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNGVFSEQILADKLSKLNNTQQCIETLSHWCIFHRSKAELFVATWKKQFDKSEMIQRIPLLYLANDILQNSKHKGNEFVTEFWKVLPAALKDVIKKGDDHGTRVVSRLIEIWEQRRVFGSRARNLKDLMLGEDAPPPLEFGKKRSRSVRIVKRDSHSIKSKLSIGGTAEKIVSAFHLVLSEQSVEDAEISKCKSSVQRVRKMEKDVDTACSVAKDPKRKTLAKELEEEENILKRCVEKLKLVEASRVALVSQLKEALHEQESELENVRTQMQVAQAQIEEACNMRRILDNEDFSQKVSVAKSAAAIAAEVADKLAASSSSQLIMTSVLSTFAAEEAKNAGLTSESTSKHEIPMTSSDPHMFRSPQQLIAAPNHSYPSVLVAQPPPLQNAAPSSQGQFHMLSNPPSQQFVQSTGGIITPYGYGSIPPLPPAPQLPTHVGAMVPLTHQTLQITPHQQIPITQQAPAPPTFRPLQPPGMVYYTNHQHSIHATLGRELANVGSKTITSLGRETLLPNILTELLIQSTDPNANGDLMNQALIPSPPKKAKNKSNRRT*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
