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Report for Sequence Feature Glyma11g35820

Feature Type:gene_model
Chromosome:Gm11
Start:37416391
stop:37421254
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma11g35820
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G56190AT Annotation by Michelle Graham. TAIR10: alpha-soluble NSF attachment protein 2 | chr3:20846119-20848356 REVERSE LENGTH=289 SoyBaseE_val: 4.00E-153ISS
GO:0006886GO-bp Annotation by Michelle Graham. GO Biological Process: intracellular protein transport SoyBaseN/AISS
GO:0005773GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuole SoyBaseN/AISS
GO:0005774GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0005483GO-mf Annotation by Michelle Graham. GO Molecular Function: soluble NSF attachment protein activity SoyBaseN/AISS
KOG1586 KOG Protein required for fusion of vesicles in vesicular transport, alpha-SNAP JGI ISS
PTHR13768Panther SOLUBLE NSF ATTACMENT PROTEIN (SNAP) JGI ISS
PTHR13768:SF8Panther ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN (SNAP-ALPHA) JGI ISS
UniRef100_B7FHQ2UniRef Annotation by Michelle Graham. Most informative UniRef hit: Alpha-soluble NSF attachment protein n=1 Tax=Medicago truncatula RepID=B7FHQ2_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1LMW7UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LMW7_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma11g35820
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g35820
ParalogEvidenceComments
Glyma18g02590 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g35820 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.11g234500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma11g35820
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma11g35820
>Glyma11g35820.1   sequence type=CDS   gene model=Glyma11g35820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCGATCAGTTATCCAAAGGAGAGGAATTCGAGAAGAAAGCTGAGAAGAAGCTCAGCGGTTGGGGCTTGTTTGGCTCCAAGTACGAAGATGCCGCCGATCTCTTTGATAAAGCCGCCAATTGCTTCAAGCTCGCCAAATCATGGGACAAAGCTGGAGCGACATACCTGAAGTTGGCAAGTTGTCATTTGAAGTTGGAAAGCAAGCATGAAGCTGCACAGGCCCATGTTGATGCTGCACATAGCTATAAAAAAACTAATATAAACGAGTCTGTATCTTGCTTAGACCAAGCCGTAAATCTTTTCTGTGACATTGGAAGACTATCTATGGCTGCTAGATATTTAAAGGAAATTGCTGAATTGTATGAGGGTGAACAGAATATTGAGCAGGCTCTTGTTTACTATGAAAAATCAGCTGATTTTTTTCAAAATGAAGAAGTGACAACTTCTGCAAACCAATGCAAACAAAAAGTTGCCCAGTTTGCTGCTCAGCTAGAACAATATCAGAAGTCGATTGAGATTTACGAAGAGATAGCTCGCCAATCCCTCAACAATAATTTGCTGAAGTATGGAGTTAAAGGACACCTGCTTAATGCTGGCATCTGCCAACTCTGTAAAGGGGATGTTATTGCTGTAACCAATGCATTAGAACGATATCAGGAACTGGATCCAACATTTTCGGGAACACGTGAATATAGATTTTTGGCGGACATTGCTGCTGCAATTGATGAAGAAGATGTTGCGAAGTTTACTGATGTTGTCAAGGAATTTGATAGCATGACCCCTCTGGATTCTTGGAAGACCACACTTCTTTTGAGGGTGAAGGAAAAGCTGAAAGCCAAAGAACTTGAGGAGGATGATCTTACTTAA
Predicted protein sequences of Glyma11g35820
>Glyma11g35820.1   sequence type=predicted peptide   gene model=Glyma11g35820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MADQLSKGEEFEKKAEKKLSGWGLFGSKYEDAADLFDKAANCFKLAKSWDKAGATYLKLASCHLKLESKHEAAQAHVDAAHSYKKTNINESVSCLDQAVNLFCDIGRLSMAARYLKEIAELYEGEQNIEQALVYYEKSADFFQNEEVTTSANQCKQKVAQFAAQLEQYQKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVIAVTNALERYQELDPTFSGTREYRFLADIAAAIDEEDVAKFTDVVKEFDSMTPLDSWKTTLLLRVKEKLKAKELEEDDLT*






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