Glyma11g35760 - SoyBase

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Report for Sequence Feature Glyma11g35760

Feature Type:	gene_model
Chromosome:	Gm11
Start:	37369692
stop:	37372151
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g35760

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G34930	AT	Annotation by Michelle Graham. TAIR10: arogenate dehydrogenase \| chr5:13233391-13235522 FORWARD LENGTH=640	SoyBase	E_val: 1.00E-99	ISS
GO:0006567	GO-bp	Annotation by Michelle Graham. GO Biological Process: threonine catabolic process	SoyBase	N/A	ISS
GO:0006571	GO-bp	Annotation by Michelle Graham. GO Biological Process: tyrosine biosynthetic process	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0004665	GO-mf	Annotation by Michelle Graham. GO Molecular Function: prephenate dehydrogenase (NADP+) activity	SoyBase	N/A	ISS
GO:0008977	GO-mf	Annotation by Michelle Graham. GO Molecular Function: prephenate dehydrogenase activity	SoyBase	N/A	ISS
PF02153	PFAM	Prephenate dehydrogenase	JGI		ISS
UniRef100_G7J2E9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Arogenate dehydrogenase n=1 Tax=Medicago truncatula RepID=G7J2E9_MEDTR	SoyBase	E_val: 9.00E-157	ISS
UniRef100_I1LMW0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LMW0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma11g35760

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g35760

Paralog	Evidence	Comments
Glyma18g02650	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g35760 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g233900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g35760

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma11g35760

Limit To All Plant Sequences

>Glyma11g35760.1   sequence type=CDS   gene model=Glyma11g35760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACAACCATGTCAACCTCATCCTCTTCCCAAAGCCTCAAAATTGGCATTGTTGGATTCGGCAACTTTGGCCAGTTTCTGGCCAAGACAATGATTAAACAAGGCCACACTCTCACAGCAACTTCTCGATCTGATTACTCTCAACTTTGTCTCCAAATGGGGATCCATTTTTTCAGGGATGTCAGCGCATTCCTCGCCGCAGACATAGATGTTATAGTGTTGTGCACATCGATATTATCGCTATCCGAGGTTGTAGGGTCAATGCCACTCACTTCCCTGAAGCGACCAACGCTCTTTGTTGATGTTCTTTCTGTGAAAGAGCACCCAAGAGAGCTTCTACTACGAGAGTTGCCAGAGGATTCAGACATACTCTGCACGCACCCAATGTTTGGTCCTCAGACTGCCAATAATGGATGGACAGATCACACTTTCATGTATGACAAAGTTCGGATAAGAGACGAAGCTACTTGCTCTAGTTTCATCCAAATCTTTGCTACTGAGGGTTGCAAGATGGTACAGATGTCCTGTGAGGAACATGACAGAGCGGCTGCTAAGAGCCAATTTATCACACACACAATTGGCAGGACATTGGGAGAAATGGATATTCAATCCACACCTATTGACACTAAGGGCTTTGAGACACTTGTTAAATTGAAGGAGACTATGATGAGAAATAGTTTTGATTTGTACAGTGGATTATTCGTGTATAACAGATTCGCCAGACAAGAGTTGGAAAACCTTGAACATGCCTTTTACAAAGTCAAAGAAACGCTGATGATACAAAGGTCGAATGGGGAGCAGGGTCATAAAAGAACCGAAAGTTGA

Predicted protein sequences of Glyma11g35760

Limit To All Plant Sequences

>Glyma11g35760.1   sequence type=predicted peptide   gene model=Glyma11g35760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTTMSTSSSSQSLKIGIVGFGNFGQFLAKTMIKQGHTLTATSRSDYSQLCLQMGIHFFRDVSAFLAADIDVIVLCTSILSLSEVVGSMPLTSLKRPTLFVDVLSVKEHPRELLLRELPEDSDILCTHPMFGPQTANNGWTDHTFMYDKVRIRDEATCSSFIQIFATEGCKMVQMSCEEHDRAAAKSQFITHTIGRTLGEMDIQSTPIDTKGFETLVKLKETMMRNSFDLYSGLFVYNRFARQELENLEHAFYKVKETLMIQRSNGEQGHKRTES*

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