Glyma11g35440 - SoyBase

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Report for Sequence Feature Glyma11g35440

Feature Type:	gene_model
Chromosome:	Gm11
Start:	37109959
stop:	37113402
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g35440

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G07780	AT	Annotation by Michelle Graham. TAIR10: phosphoribosylanthranilate isomerase 1 \| chr1:2410352-2411833 REVERSE LENGTH=275	SoyBase	E_val: 2.00E-116	ISS
GO:0000162	GO-bp	Annotation by Michelle Graham. GO Biological Process: tryptophan biosynthetic process	SoyBase	N/A	ISS
GO:0006568	GO-bp	Annotation by Michelle Graham. GO Biological Process: tryptophan metabolic process	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004640	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphoribosylanthranilate isomerase activity	SoyBase	N/A	ISS
KOG4202	KOG	Phosphoribosylanthranilate isomerase	JGI		ISS
PTHR22854	Panther	TRYPTOPHAN BIOSYNTHESIS PROTEIN	JGI		ISS
PTHR22854:SF1	Panther	TRYPTOPHAN BIOSYNTHESIS PROTEIN	JGI		ISS
PF00697	PFAM	N-(5'phosphoribosyl)anthranilate (PRA) isomerase	JGI		ISS
UniRef100_I1LMS4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: N-(5'-phosphoribosyl)anthranilate isomerase n=1 Tax=Glycine max RepID=I1LMS4_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_UPI000233CF9D	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233CF9D related cluster n=1 Tax=unknown RepID=UPI000233CF9D	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma11g35440

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g35440 not represented in the dataset	Glyma11g35440 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g35440

Paralog	Evidence	Comments
Glyma18g03000	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g35440 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g230900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g35440

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma11g35440

Limit To All Plant Sequences

>Glyma11g35440.2   sequence type=transcript   gene model=Glyma11g35440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTTGAATCACCGCGACGGGTTTATCACCGTTCCAAAGTGTCATAATGCTTTCAGGTTCAAGCACTGGGAGTTACTTACAACTTAGAGCTGCAAAATTTCACATGAGACCAATTTCTGGTTTAAGAGGAGAGAAGTTGCAATTTTCAAGTGTAAGGTTTGGTCTTAAGCATAAAATTTCCTGCAAACTTACTGATGTGGGAAATGATTTAAGCTCATCAAAGGAGCTTGGAAAGTGTCAACCTTTGGTTAAGATGTGTGGCATTACATCAGCTAAAGATGCTGCAATGGCAGCTGAAGCTGGTGCAAGTTTTATTGGAATGGTCATGTGGCCTAACTCAAAACGTTCTGTTTCGCTTTCTGTTGCACTGGAGATATCGAAAGTTGCAAGAGATTATGGAGCAGAGCCTGTGGGTGTATTTGTGGATGATGATTCTGAAACAATTCTAAGAGCTTCTGATGCAGCAAACCTTGAATTTGTTCAGCTTCATGGATATGGATCTCGGTTAGCTTTTCCGTCTTTAATTCAGGAAAATCGTGTAATATATGTTCTCCATGTAAATGAGGACGGAAACCTTTTAAACACAATTTCTGATGAAGAGTGTTCTCTAGTTGATTGGGTCCTTGTAGACAGTGCAAAGGGTGGCAGTGGTAAAGCATTCAATTGGGACCAGTTGAAACTGCCAAACATTAAAAGTAAGTATGGTTGGCTCTTAGCAGGAGGGATCCAGCCTGAGAATGTTTCTAAGGCTCTATCTACTCTCAAGCCTGAAGGGGTCGATGTCAGCAGTGGCATTTGTGCATCAGATGGTATCCGCAAGGATCAATCAAGAATAACTTCCTTCATGAATGCAGTGCATTCTGTTCAATATTGATTTACCTTGAATTATTATGAGTCTTGAGAAAAGAATTGTAATCTGGAAATATCCTTAAGTTCTTCTTTCATGATGTCTTGTCACAATTTTTTTCTATTACAATTTGTACCCCTTAAGTTCTTCCTTGGGAGCTGTTTTCTAGGCATGGGAATGGGAATATTGTAATGCGGGGTGAGAATACATGGGTACAATCTTTATTTAATTAATACAAATTCAAATATAAAAAAGTAAGAACCACATTGTCATATTTTTCCTGCTTATCGTTACATACAACCTCATTGCAAT

>Glyma11g35440.3   sequence type=transcript   gene model=Glyma11g35440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTCACCCTCCCCCTTCTTACTTCTCTGTTCTAAACCCTTGCTTTGAATCACCGCGACGGGTTTATCACCGTTCCAAAGTGTCATAATGCTTTCAGGTTTCTCATTTTACTCATTTCATGTTAAATGGTACTCTCTGTTCAGTGTTTGTAACCTGGCATCCCACATGTTTGATGAATTTCCTACCTGAATTGATTTTGTGATAAATCTCTCTTTGTCAAATCTCAATTCTTAAATTAGGAAAGTTATTTTGTACCATTAGATATATTAATATTTAACGGTCATAAATCTCTCACTGTGGGCTGTGGAAGGGATTCATGGAGTTGCAGCGCTGCTACCACCGTCGATGCTTGTAATGGCTGCAGAACAGATGCGGACAGAAAATCGGGAAAGTGAAGGGTAGAACGAGAAAAGGAAAAAAGGAAAAAAATAATCTTAGATCATTAAAATTTAATATTACTATATCCAATGGTACAAAATAACTTGCCCATGATCCTCTTTCCCACCCTAGCATTCTTACTTGTCTGTTCTAATCCGTCGTTGCTTTGAATGTACTTTTCCACAGTGTCAAAATCAAAATGCTTTCAGGTTCAAGCACTGGGAGTTACTTACAACTTAGAGCTGCAAAATTTCACATGAGACCAATTTCTGGTTTAAGAGGAGAGAAGTTGCAATTTTCAAGTGTAAGGTTTGGTCTTAAGCATAAAATTTCCTGCAAACTTACTGATGTGGGAAATGATTTAAGCTCATCAAAGGAGCTTGGAAAGTGTCAACCTTTGGTTAAGATGTGTGGCATTACATCAGCTAAAGATGCTGCAATGGCAGCTGAAGCTGGTGCAAGTTTTATTGGAATGGTCATGTGGCCTAACTCAAAACGTTCTGTTTCGCTTTCTGTTGCACTGGAGATATCGAAAGTTGCAAGAGATTATGGAGCAGAGCCTGTGGGTGTATTTGTGGATGATGATTCTGAAACAATTCTAAGAGCTTCTGATGCAGCAAACCTTGAATTTGTTCAGCTTCATGGATATGGATCTCGGTTAGCTTTTCCGTCTTTAATTCAGGAAAATCGTGTAATATATGTTCTCCATGTAAATGAGGACGGAAACCTTTTAAACACAATTTCTGATGAAGAGTGTTCTCTAGTTGATTGGGTCCTTGTAGACAGTGCAAAGGGTGGCAGTGGTAAAGCATTCAATTGGGACCAGTTGAAACTGCCAAACATTAAAAGTAAGTATGGTTGGCTCTTAGCAGGAGGGATCCAGCCTGAGAATGTTTCTAAGGCTCTATCTACTCTCAAGCCTGAAGGGGTCGATGTCAGCAGTGGCATTTGTGCATCAGATGGTATCCGCAAGGATCAATCAAGAATAACTTCCTTCATGAATGCAGTGCATTCTGTTCAATATTGATTTACCTTGAATTATTATGAGTCTTGAGAAAAGAATTGTAATCTGGAAATATCCTTAAGTTCTTCTTTCATGATGTCTTGTCACAATTTTTTTCTATTACAATTTGTACCCCTTAAGTTCTTCCTTGGGAGCTGTTTTCTAGGCATGGGAATGGGAATATTGTAATGCGGGGTGAGAATACATGGGTACAATCTTTATTTAATTAATACAAATTCAAATATAAAAAAGTAAGAACCACATTGTCATATTTTTCCTGCTTATCGTTACATACAACCTCATTGCAATTCTACTCTTCTTGGTATAAAGTAACGTTCTAATTTTTGCAGTACTTAAATGGTTTTATTTGAGAGAGTTGAACGCTCTGAAGACTCTCAAGTTTCAAGTGCTACTAAACAAGCACATTTAAAATGCCAAATATGAGACAAGAATTTGGGTTCTCTGGAAGTAAAGGAAACACTAATTGTTAGATTCGTAGTTAGTACACGCGGCTATTTTGCAAGCTATTGAAATATCTCCCAGCAATGATTGACTCAGAGTCACGAGTAGTGGAACTGCATCAAACTGCAGACGATGTGAGTTGGGCATACATATTGATGCCTATATATGGCTGGAAATTGGCGTTTGAGGAGAAGTAGGAGCTACTTTGGTTTTTCTTGTTTCTTTTCCTTCTGTACCGAAAAGGATAAACCTACTTCAAACTGAAAGCAATTAAAAACAAGAACCAGTGGACATGTGACACGAGTAGTTTCTGTTCCTATGGCAGTGTCTGATCCACAAACTTTCACTGTTTGACACCATTAATATAATTCTAAGGGCTCCTTTTCCGTCCTTATATCCTTGTTTATGTTTCTGTTAAATAAGATTGGGTTTATATAGAGGGTTGTTTTGGCTTTGTATGCAGTGATGGTTGTCACATAGCTTAGCTGCTATGATGTATACATCTGAAAGTTGATCAGGTGGTGAAAAGAGATTGAAAGAGTGAACTGAGGAGAAGCTGACT

Coding sequences of Glyma11g35440

Limit To All Plant Sequences

>Glyma11g35440.1   sequence type=CDS   gene model=Glyma11g35440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGACCAATTTCTGGTTTAAGAGGAGAGAAGTTGCAATTTTCAAGTGTAAGGTTTGGTCTTAAGCATAAAATTTCCTGCAAACTTACTGATGTGGGAAATGATTTAAGCTCATCAAAGGAGCTTGGAAAGTGTCAACCTTTGGTTAAGATGTGTGGCATTACATCAGCTAAAGATGCTGCAATGGCAGCTGAAGCTGGTGCAAGTTTTATTGGAATGGTCATGTGGCCTAACTCAAAACGTTCTGTTTCGCTTTCTGTTGCACTGGAGATATCGAAAGTTGCAAGAGATTATGGAGCAGAGCCTGTGGGTGTATTTGTGGATGATGATTCTGAAACAATTCTAAGAGCTTCTGATGCAGCAAACCTTGAATTTGTTCAGCTTCATGGATATGGATCTCGGTTAGCTTTTCCGTCTTTAATTCAGGAAAATCGTGTAATATATGTTCTCCATGTAAATGAGGACGGAAACCTTTTAAACACAATTTCTGATGAAGAGTGTTCTCTAGTTGATTGGGTCCTTGTAGACAGTGCAAAGGGTGGCAGTGGTAAAGCATTCAATTGGGACCAGTTGAAACTGCCAAACATTAAAAGTAAGTATGGTTGGCTCTTAGCAGGAGGGATCCAGCCTGAGAATGTTTCTAAGGCTCTATCTACTCTCAAGCCTGAAGGGGTCGATGTCAGCAGTGGCATTTGTGCATCAGATGGTATCCGCAAGGATCAATCAAGAATAACTTCCTTCATGAATGCAGTGCATTCTGTTCAATATTGA

>Glyma11g35440.2   sequence type=CDS   gene model=Glyma11g35440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTTTCAGGTTCAAGCACTGGGAGTTACTTACAACTTAGAGCTGCAAAATTTCACATGAGACCAATTTCTGGTTTAAGAGGAGAGAAGTTGCAATTTTCAAGTGTAAGGTTTGGTCTTAAGCATAAAATTTCCTGCAAACTTACTGATGTGGGAAATGATTTAAGCTCATCAAAGGAGCTTGGAAAGTGTCAACCTTTGGTTAAGATGTGTGGCATTACATCAGCTAAAGATGCTGCAATGGCAGCTGAAGCTGGTGCAAGTTTTATTGGAATGGTCATGTGGCCTAACTCAAAACGTTCTGTTTCGCTTTCTGTTGCACTGGAGATATCGAAAGTTGCAAGAGATTATGGAGCAGAGCCTGTGGGTGTATTTGTGGATGATGATTCTGAAACAATTCTAAGAGCTTCTGATGCAGCAAACCTTGAATTTGTTCAGCTTCATGGATATGGATCTCGGTTAGCTTTTCCGTCTTTAATTCAGGAAAATCGTGTAATATATGTTCTCCATGTAAATGAGGACGGAAACCTTTTAAACACAATTTCTGATGAAGAGTGTTCTCTAGTTGATTGGGTCCTTGTAGACAGTGCAAAGGGTGGCAGTGGTAAAGCATTCAATTGGGACCAGTTGAAACTGCCAAACATTAAAAGTAAGTATGGTTGGCTCTTAGCAGGAGGGATCCAGCCTGAGAATGTTTCTAAGGCTCTATCTACTCTCAAGCCTGAAGGGGTCGATGTCAGCAGTGGCATTTGTGCATCAGATGGTATCCGCAAGGATCAATCAAGAATAACTTCCTTCATGAATGCAGTGCATTCTGTTCAATATTGA

>Glyma11g35440.3   sequence type=CDS   gene model=Glyma11g35440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTTTCAGGTTCAAGCACTGGGAGTTACTTACAACTTAGAGCTGCAAAATTTCACATGAGACCAATTTCTGGTTTAAGAGGAGAGAAGTTGCAATTTTCAAGTGTAAGGTTTGGTCTTAAGCATAAAATTTCCTGCAAACTTACTGATGTGGGAAATGATTTAAGCTCATCAAAGGAGCTTGGAAAGTGTCAACCTTTGGTTAAGATGTGTGGCATTACATCAGCTAAAGATGCTGCAATGGCAGCTGAAGCTGGTGCAAGTTTTATTGGAATGGTCATGTGGCCTAACTCAAAACGTTCTGTTTCGCTTTCTGTTGCACTGGAGATATCGAAAGTTGCAAGAGATTATGGAGCAGAGCCTGTGGGTGTATTTGTGGATGATGATTCTGAAACAATTCTAAGAGCTTCTGATGCAGCAAACCTTGAATTTGTTCAGCTTCATGGATATGGATCTCGGTTAGCTTTTCCGTCTTTAATTCAGGAAAATCGTGTAATATATGTTCTCCATGTAAATGAGGACGGAAACCTTTTAAACACAATTTCTGATGAAGAGTGTTCTCTAGTTGATTGGGTCCTTGTAGACAGTGCAAAGGGTGGCAGTGGTAAAGCATTCAATTGGGACCAGTTGAAACTGCCAAACATTAAAAGTAAGTATGGTTGGCTCTTAGCAGGAGGGATCCAGCCTGAGAATGTTTCTAAGGCTCTATCTACTCTCAAGCCTGAAGGGGTCGATGTCAGCAGTGGCATTTGTGCATCAGATGGTATCCGCAAGGATCAATCAAGAATAACTTCCTTCATGAATGCAGTGCATTCTGTTCAATATTGA

Predicted protein sequences of Glyma11g35440

Limit To All Plant Sequences

>Glyma11g35440.1   sequence type=predicted peptide   gene model=Glyma11g35440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRPISGLRGEKLQFSSVRFGLKHKISCKLTDVGNDLSSSKELGKCQPLVKMCGITSAKDAAMAAEAGASFIGMVMWPNSKRSVSLSVALEISKVARDYGAEPVGVFVDDDSETILRASDAANLEFVQLHGYGSRLAFPSLIQENRVIYVLHVNEDGNLLNTISDEECSLVDWVLVDSAKGGSGKAFNWDQLKLPNIKSKYGWLLAGGIQPENVSKALSTLKPEGVDVSSGICASDGIRKDQSRITSFMNAVHSVQY*

>Glyma11g35440.2   sequence type=predicted peptide   gene model=Glyma11g35440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLSGSSTGSYLQLRAAKFHMRPISGLRGEKLQFSSVRFGLKHKISCKLTDVGNDLSSSKELGKCQPLVKMCGITSAKDAAMAAEAGASFIGMVMWPNSKRSVSLSVALEISKVARDYGAEPVGVFVDDDSETILRASDAANLEFVQLHGYGSRLAFPSLIQENRVIYVLHVNEDGNLLNTISDEECSLVDWVLVDSAKGGSGKAFNWDQLKLPNIKSKYGWLLAGGIQPENVSKALSTLKPEGVDVSSGICASDGIRKDQSRITSFMNAVHSVQY*

>Glyma11g35440.3   sequence type=predicted peptide   gene model=Glyma11g35440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLSGSSTGSYLQLRAAKFHMRPISGLRGEKLQFSSVRFGLKHKISCKLTDVGNDLSSSKELGKCQPLVKMCGITSAKDAAMAAEAGASFIGMVMWPNSKRSVSLSVALEISKVARDYGAEPVGVFVDDDSETILRASDAANLEFVQLHGYGSRLAFPSLIQENRVIYVLHVNEDGNLLNTISDEECSLVDWVLVDSAKGGSGKAFNWDQLKLPNIKSKYGWLLAGGIQPENVSKALSTLKPEGVDVSSGICASDGIRKDQSRITSFMNAVHSVQY*

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