Report for Sequence Feature Glyma11g35300
Feature Type: gene_model
Chromosome: Gm11
Start: 36984611
stop: 36991153
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma11g35300
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G40116 AT
Annotation by Michelle Graham. TAIR10: Phosphoinositide-specific phospholipase C family protein | chr2:16751782-16754311 FORWARD LENGTH=613
SoyBase E_val: 0 ISS
GO:0006629 GO-bp
Annotation by Michelle Graham. GO Biological Process: lipid metabolic process
SoyBase N/A ISS
GO:0007165 GO-bp
Annotation by Michelle Graham. GO Biological Process: signal transduction
SoyBase N/A ISS
GO:0035556 GO-bp
Annotation by Michelle Graham. GO Biological Process: intracellular signal transduction
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0004435 GO-mf
Annotation by Michelle Graham. GO Molecular Function: phosphatidylinositol phospholipase C activity
SoyBase N/A ISS
GO:0004629 GO-mf
Annotation by Michelle Graham. GO Molecular Function: phospholipase C activity
SoyBase N/A ISS
GO:0008081 GO-mf
Annotation by Michelle Graham. GO Molecular Function: phosphoric diester hydrolase activity
SoyBase N/A ISS
KOG0169
KOG
Phosphoinositide-specific phospholipase C
JGI ISS
PTHR10336 Panther
PHOSPHOLIPASE C-RELATED
JGI ISS
PTHR10336:SF35 Panther
PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY P
JGI ISS
PF00168 PFAM
C2 domain
JGI ISS
PF00387 PFAM
Phosphatidylinositol-specific phospholipase C, Y domain
JGI ISS
PF00388 PFAM
Phosphatidylinositol-specific phospholipase C, X domain
JGI ISS
PF09279 PFAM
Phosphoinositide-specific phospholipase C, efhand-like
JGI ISS
UniRef100_P93620 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Phosphoinositide-specific phospholipase C n=1 Tax=Vigna unguiculata RepID=P93620_VIGUN
SoyBase E_val: 0 ISS
UniRef100_UPI000233D2AE UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233D2AE related cluster n=1 Tax=unknown RepID=UPI000233D2AE
SoyBase E_val: 0 ISS
Expression Patterns of Glyma11g35300
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma11g35300
Paralog Evidence Comments
Glyma18g03100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma11g35300 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.11g230000 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma11g35300
Coding sequences of Glyma11g35300
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma11g35300.2 sequence type=CDS gene model=Glyma11g35300 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCACTGTTCTTATGCCCTCAAGTATGTAGCATTCATATAGTCACAGCACGTTCACTACAATTGCAAAGTCCATTCCATTCCGCTGCGATCGCCATTTCTTTTCTGAAACACACACACCGACACCAATCACTCTCTTTGATCCATTCCGTTTACACGATTATGGCCAGTCACAACTACAAAGTCTTCAGCTGCTTCAACAGGAAGTTCACCGTCACCGAGCCGGGCCCACCGCCCGACGTAGAAAGAGCGTTTTCTGAATTCGCCGCCGGCGCCTCCTCCCTGTCCGGCGATCACATCCTCCGGTTTCTGGCGGAGCACCAGGGCGATGTGGACTGCACCGCAGCGGATTCGGAGCGGATGCTCCAGCAATCGCGGAAAGAGGATCGGGAAAGTGGAATGGATCTCCACGACTTCTTCCGTTTCCTGCTACATGACGATTTCAATAGCCCCATCAAATCTCAGGTACATCATGATATGAATGCTCCATTGTCACATTATTTCATATATACTGGGCACAATTCCTATCTTACTGGGAATCAACTGAGCAGTGACTGCAGTGATGTACCAATCATAAAGGCTTTGCAAGGAGGTGTAAGAGTAATTGAACTAGATTTATGGCCAAATTCAGACAAAGATGATATCGAAGTAGTTCATGGAAGGACTCTTACGACTCCTGTCTCACTCATCCAATGTTTGAAGTCCATAAAAGAGTATGCTTTTGTTAAATCTCACTACCCACTCATTATAACTTTAGAAGATCACCTTACTCCAGATCTTCAAGCTAAAGCTGCAGAGATGGCAACTCAAGTATTTGGAGAATTGCTTTATTATCCTCAGACAGATTCTCTGATGGAATTCCCCTCACCGGAATCATTGAAAGGTCGAATTCTTATATCAACAAAACCACCAAAAGAATTTCTTGAATCCAAAGAATGTGATGACAAGGACAACGAAAAGGAATCAGCCGACGAGGTTTTGTCATTGCCAGACCAAACAAGTGAACGGGAAACTGATGATAAGAGTGCACCTGAGTACAAACGATTGATTACAATCCATGCTGGGAAACCAAAGGGTGATATTCAGGATGAATTAAAAGCTGCTGGTGCTGTTAGGCGCTTAAGCTTGAGTGAACAAGCACTTGAAAAGGCTTCTGAATCTTATGGAGCTGATATTGTTAGGTTTACGCAGAACAATATTCTCAGAGTATATCCAAAGGGAACACGTCTCAATTCCTCAAATTACAAGCCACACATAGGGTGGACATACGGAGCTCAGATGGTTGCGTTCAACATGCAGGGGTATGGAAAATCACTTCGGTACATGCAAGGAATGTTTAGAGCAAATGGAGGGTGCGGTTATGTGAAAAAGCCTGAATTTCTAATTGAAAAAGGTCCATATAATGAGGTTTTTGATCCTAAAAGAACATTGCCCGTGAAGAAAACATTAAAGGTAAAAGTCTATATGGGGACCGGTTGGAGCTTAGATTTCAGCCAAACAGACTTCGATACTTACTCACCACCCGACTTTTACGTTAAGGTTTGTATTGTTGGAGTTCCAGCTGATATGGCCAAGAAGAAAACATGTGTAATTTCAAATAACTGGTTTCCTGTCTGGGATGAACAGTTTGATTTCCCTTTGACTGTTCCAGAGCTGGCTTTGCTCCGCATAGAAGTTCGAGAGAATGACAAGAGTCAAAAGGATGACTTTGGTGGACAGACGTGTTTGCCTGTCTCAGAGCTAAAATCTGGATTCCGATCAGTCCCTCTGTATGATGAAAAGGGTGACAAATTAAAGTCTGTGAAGCTTCTAATGCGGTTTCAGTTTAGATGA
Predicted protein sequences of Glyma11g35300
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma11g35300.2 sequence type=predicted peptide gene model=Glyma11g35300 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MALFLCPQVCSIHIVTARSLQLQSPFHSAAIAISFLKHTHRHQSLSLIHSVYTIMASHNYKVFSCFNRKFTVTEPGPPPDVERAFSEFAAGASSLSGDHILRFLAEHQGDVDCTAADSERMLQQSRKEDRESGMDLHDFFRFLLHDDFNSPIKSQVHHDMNAPLSHYFIYTGHNSYLTGNQLSSDCSDVPIIKALQGGVRVIELDLWPNSDKDDIEVVHGRTLTTPVSLIQCLKSIKEYAFVKSHYPLIITLEDHLTPDLQAKAAEMATQVFGELLYYPQTDSLMEFPSPESLKGRILISTKPPKEFLESKECDDKDNEKESADEVLSLPDQTSERETDDKSAPEYKRLITIHAGKPKGDIQDELKAAGAVRRLSLSEQALEKASESYGADIVRFTQNNILRVYPKGTRLNSSNYKPHIGWTYGAQMVAFNMQGYGKSLRYMQGMFRANGGCGYVKKPEFLIEKGPYNEVFDPKRTLPVKKTLKVKVYMGTGWSLDFSQTDFDTYSPPDFYVKVCIVGVPADMAKKKTCVISNNWFPVWDEQFDFPLTVPELALLRIEVRENDKSQKDDFGGQTCLPVSELKSGFRSVPLYDEKGDKLKSVKLLMRFQFR*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
