Glyma11g35020 - SoyBase

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Report for Sequence Feature Glyma11g35020

Feature Type:	gene_model
Chromosome:	Gm11
Start:	36758459
stop:	36762679
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g35020

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G39990	AT	Annotation by Michelle Graham. TAIR10: eukaryotic translation initiation factor 2 \| chr2:16698332-16699929 REVERSE LENGTH=293	SoyBase	E_val: 9.00E-157	ISS
GO:0006413	GO-bp	Annotation by Michelle Graham. GO Biological Process: translational initiation	SoyBase	N/A	ISS
GO:0009790	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development	SoyBase	N/A	ISS
GO:0009846	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen germination	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0005852	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: eukaryotic translation initiation factor 3 complex	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0003743	GO-mf	Annotation by Michelle Graham. GO Molecular Function: translation initiation factor activity	SoyBase	N/A	ISS
KOG2975	KOG	Translation initiation factor 3, subunit f (eIF-3f)	JGI		ISS
PTHR10540	Panther	EIF3F-RELATED	JGI		ISS
PF01398	PFAM	Mov34/MPN/PAD-1 family	JGI		ISS
UniRef100_B7FK44	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Eukaryotic translation initiation factor 3 subunit F n=1 Tax=Medicago truncatula RepID=B7FK44_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1LMP4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LMP4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma11g35020

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g35020 not represented in the dataset	Glyma11g35020 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g35020

Paralog	Evidence	Comments
Glyma18g03340	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g35020 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g227900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g35020

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma11g35020

Limit To All Plant Sequences

>Glyma11g35020.2   sequence type=transcript   gene model=Glyma11g35020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCTATTGACCAACAACAAATATTGATAAGCCCATGTGTAAAACCCTAGTTACAGATTAGGGTGCTTGTGTTGTGTTCGGTGAAGTGAGTAGTGAAGGTGCTAAATCGAATCGAATCGAATCTCCGAAGATGGCCGCGAGCGATCGCACAGTGTTGCAATTCTCTTCATCATCTTCTTCTTCGCAGAGCTTGTCCGCGAAGGTCCACCCTCTGGTCATCTTCAACATCTGTGATTGCTACGTTCGACGCCCTGACCAAGCCGATCGTGTCATCGGAACCCTACTCGGCTCCGTCCTTCCCGATGGAACCGTCGATATCCGCAATTCCTATGCTGTTCCTCACAACGAATCTATCGAACAGGTTGCGTTGGATATAGAGTACCACCACAATATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATGGTATTCAACCGGTCTTGGAGTAACAGGTGGTAGTGCATTAATTCACGAGTTTTATTCTCGAGAAGTCCCCAATCCCATACACTTGACGGTTGATACAGGATTTACAAATGGAGCGGGTACTATTAAAGCATATGTGTCTAACAATTTATCTCTTGGAGAACGGCAAATTGCTGCACAGTTTCAAGAAATTCCATTGGATCTTCGTATGGTGGAAGCTGAGCGAATTGGATTTGACAAAATTCCCTCAGATTTAGAAGGGATGGAAGCATCAATGCAACATCTGCTAGTCTTGATTGATGACATCTACAAATATGTTAACGATGTTGTGGAAGGGCTAGTTGCACCAGACAACAAAATCGGGAGATTTATATCAGATGCTGTAGGTTCCCTTCCCAAATTGTCCCCATCAGTTTTTGATAAGCTTGTGAATGACAGTTTGCAGGATCACTTGCTTTTGCTGTATTTATCTAGTATTACAAGAACGCAGCTTAGCTTGGCTGAAAAATTGAACACAGCTGCTCAGATTCTGTGATTCTTCCGCTTGTTTATTGCCGAAGACAAATTTTTCTGAGAGTTTCCTTTCTTGTCATATTTCAAGAAACGTGGAATGTCATTGTTTTATACTTCACTTTTACTTTGCTTATTTTTTTGTGTTTTGTGCTGGTTTGCATAGGTAAGTTCACTTATTGTCCAAGGTATGCAGTGTAGTGTTCACTTGTTAATTTAATCTTTATTTGAAAGAAAATGAGCAAAAGCTTTTCCTTCATTAAATTATTTTTTTCATGAGATTGGATATAGTTTGAGAAAATTTAACTGTTTCTTTTAGAAGTTAATTAGCAAAAATTTTTTTATTCAATTTCTGAAATTAGAAAAAAAAATATAACAACTTTTTGTTGAGTCCC

Coding sequences of Glyma11g35020

Limit To All Plant Sequences

>Glyma11g35020.1   sequence type=CDS   gene model=Glyma11g35020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCGCGAGCGATCGCACAGTGTTGCAATTCTCTTCATCATCTTCTTCTTCGCAGAGCTTGTCCGCGAAGGTCCACCCTCTGGTCATCTTCAACATCTGTGATTGCTACGTTCGACGCCCTGACCAAGCCGATCGTGTCATCGGAACCCTACTCGGCTCCGTCCTTCCCGATGGAACCGTCGATATCCGCAATTCCTATGCTGTTCCTCACAACGAATCTATCGAACAGGTTGCGTTGGATATAGAGTACCACCACAATATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATGGTATTCAACCGGTCTTGGAGTAACAGGTGGTAGTGCATTAATTCACGAGTTTTATTCTCGAGAAGTCCCCAATCCCATACACTTGACGGTTGATACAGGATTTACAAATGGAGCGGGTACTATTAAAGCATATGTGTCTAACAATTTATCTCTTGGAGAACGGCAAATTGCTGCACAGTTTCAAGAAATTCCATTGGATCTTCGTATGGTGGAAGCTGAGCGAATTGGATTTGATATGCTGAAGGCAACCGCAGTTGACAAAATTCCCTCAGATTTAGAAGGGATGGAAGCATCAATGCAACATCTGCTAGTCTTGATTGATGACATCTACAAATATGTTAACGATGTTGTGGAAGGGCTAGTTGCACCAGACAACAAAATCGGGAGATTTATATCAGATGCTGTAGGTTCCCTTCCCAAATTGTCCCCATCAGTTTTTGATAAGCTTGTGAATGACAGTTTGCAGGATCACTTGCTTTTGCTGTATTTATCTAGTATTACAAGAACGCAGCTTAGCTTGGCTGAAAAATTGAACACAGCTGCTCAGATTCTGTGA

>Glyma11g35020.2   sequence type=CDS   gene model=Glyma11g35020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCGCGAGCGATCGCACAGTGTTGCAATTCTCTTCATCATCTTCTTCTTCGCAGAGCTTGTCCGCGAAGGTCCACCCTCTGGTCATCTTCAACATCTGTGATTGCTACGTTCGACGCCCTGACCAAGCCGATCGTGTCATCGGAACCCTACTCGGCTCCGTCCTTCCCGATGGAACCGTCGATATCCGCAATTCCTATGCTGTTCCTCACAACGAATCTATCGAACAGGTTGCGTTGGATATAGAGTACCACCACAATATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATGGTATTCAACCGGTCTTGGAGTAACAGGTGGTAGTGCATTAATTCACGAGTTTTATTCTCGAGAAGTCCCCAATCCCATACACTTGACGGTTGATACAGGATTTACAAATGGAGCGGGTACTATTAAAGCATATGTGTCTAACAATTTATCTCTTGGAGAACGGCAAATTGCTGCACAGTTTCAAGAAATTCCATTGGATCTTCGTATGGTGGAAGCTGAGCGAATTGGATTTGACAAAATTCCCTCAGATTTAGAAGGGATGGAAGCATCAATGCAACATCTGCTAGTCTTGATTGATGACATCTACAAATATGTTAACGATGTTGTGGAAGGGCTAGTTGCACCAGACAACAAAATCGGGAGATTTATATCAGATGCTGTAGGTTCCCTTCCCAAATTGTCCCCATCAGTTTTTGATAAGCTTGTGAATGACAGTTTGCAGGATCACTTGCTTTTGCTGTATTTATCTAGTATTACAAGAACGCAGCTTAGCTTGGCTGAAAAATTGAACACAGCTGCTCAGATTCTGTGA

Predicted protein sequences of Glyma11g35020

Limit To All Plant Sequences

>Glyma11g35020.1   sequence type=predicted peptide   gene model=Glyma11g35020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAASDRTVLQFSSSSSSSQSLSAKVHPLVIFNICDCYVRRPDQADRVIGTLLGSVLPDGTVDIRNSYAVPHNESIEQVALDIEYHHNMLISHQKVNPKEIIVGWYSTGLGVTGGSALIHEFYSREVPNPIHLTVDTGFTNGAGTIKAYVSNNLSLGERQIAAQFQEIPLDLRMVEAERIGFDMLKATAVDKIPSDLEGMEASMQHLLVLIDDIYKYVNDVVEGLVAPDNKIGRFISDAVGSLPKLSPSVFDKLVNDSLQDHLLLLYLSSITRTQLSLAEKLNTAAQIL*

>Glyma11g35020.2   sequence type=predicted peptide   gene model=Glyma11g35020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAASDRTVLQFSSSSSSSQSLSAKVHPLVIFNICDCYVRRPDQADRVIGTLLGSVLPDGTVDIRNSYAVPHNESIEQVALDIEYHHNMLISHQKVNPKEIIVGWYSTGLGVTGGSALIHEFYSREVPNPIHLTVDTGFTNGAGTIKAYVSNNLSLGERQIAAQFQEIPLDLRMVEAERIGFDKIPSDLEGMEASMQHLLVLIDDIYKYVNDVVEGLVAPDNKIGRFISDAVGSLPKLSPSVFDKLVNDSLQDHLLLLYLSSITRTQLSLAEKLNTAAQIL*

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