SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G05780 | AT | Annotation by Michelle Graham. TAIR10: RP non-ATPase subunit 8A | chr5:1735862-1738176 FORWARD LENGTH=308 | SoyBase | E_val: 0 | ISS |
| GO:0006511 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process | SoyBase | N/A | ISS |
| GO:0009965 | GO-bp | Annotation by Michelle Graham. GO Biological Process: leaf morphogenesis | SoyBase | N/A | ISS |
| GO:0042023 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA endoreduplication | SoyBase | N/A | ISS |
| GO:0043161 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteasomal ubiquitin-dependent protein catabolic process | SoyBase | N/A | ISS |
| GO:0043248 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteasome assembly | SoyBase | N/A | ISS |
| GO:0051510 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of unidimensional cell growth | SoyBase | N/A | ISS |
| GO:0051788 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to misfolded protein | SoyBase | N/A | ISS |
| GO:0080129 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteasome core complex assembly | SoyBase | N/A | ISS |
| GO:0000502 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: proteasome complex | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0008541 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: proteasome regulatory particle, lid subcomplex | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG1556 | KOG | 26S proteasome regulatory complex, subunit RPN8/PSMD7 | JGI | ISS | |
| PTHR10540 | Panther | EIF3F-RELATED | JGI | ISS | |
| PF01398 | PFAM | Mov34/MPN/PAD-1 family | JGI | ISS | |
| UniRef100_G7JB60 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: 26S proteasome regulatory particle non-ATPase subunit n=1 Tax=Medicago truncatula RepID=G7JB60_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LMP2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LMP2_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma11g34980 not represented in the dataset |
Glyma11g34980 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma18g03360 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g227700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g34980.1 sequence type=CDS gene model=Glyma11g34980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATGTGATAAAGACGCAGCAAATCTCATCTCGACCAATCGAGAAGGTGGTGGTTCACCCTCTCGTGCTTCTCAGCATCGTCGACAACTACAACAGAGTCGCCAAAGACACTCGCAAGCGCGTCGTCGGCGTCTTGCTCGGCTCCTCCTTCAAAGGCACCGTCGACGTCACCAACAGCTACGCCGTGCCCTTTGAAGAAGATGACAAGGATCCTAGCATCTGGTTTCTTGACCACAATTACCATGAATCTATGTTTTCCATGTTTAAAAGAATAAATGCAAAGGAGCATGTTGTGGGGTGGTATAGCACTGGTCCAAAGCTGCGCGAAAATGATCTTGACATTCACGGCTTATTTAATGACTATGTTCCAAATCCTGTCTTGGTTATAATTGATGTTGAACCTAAGGAATTGGGAATCCCAACAAAAGCATATTATGCCGTTGAAGAGGTTAAAGAGAATGCCACTCAAAAAAGTCAAAAAGTGTTTGTGCATGTGCCATCAGAGATTGCTGCTCATGAAGTTGAGGAAATAGGAGTGGAACACTTGCTTAGAGATGTGAAGGATACAACCATTAGCACCCTTGCAACAGAGGTAAGTGCAAAACTCACAGCTTTGAAGGGTTTGGATGCAAGACTTAAAGAGATCAGGAGTTACCTTGACCTTGTTATTGATGGAAAGCTTCCATTAAACCATGAGATCCTGTACCATCTGCAGGATGTGTTTAACCTGCTACCAAATCTTAATGTTGCTGATCTTATCAAGGCTTTCGCAGTGAAAACCAATGATATGATGCTGGTAATATACCTCTCGTCTCTCATTAGAAGTGTAATAGCACTCCACAACTTGATTAACAACAAGATGCTTAACAAGGAACATGAACGGGCAGAAGACTCGAAAACAGTTACAGTGCCAAGTGCAGCTGCATAA
>Glyma11g34980.1 sequence type=predicted peptide gene model=Glyma11g34980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDVIKTQQISSRPIEKVVVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDVTNSYAVPFEEDDKDPSIWFLDHNYHESMFSMFKRINAKEHVVGWYSTGPKLRENDLDIHGLFNDYVPNPVLVIIDVEPKELGIPTKAYYAVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTTISTLATEVSAKLTALKGLDARLKEIRSYLDLVIDGKLPLNHEILYHLQDVFNLLPNLNVADLIKAFAVKTNDMMLVIYLSSLIRSVIALHNLINNKMLNKEHERAEDSKTVTVPSAAA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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