SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G39970 | AT | Annotation by Michelle Graham. TAIR10: Mitochondrial substrate carrier family protein | chr2:16684026-16686392 REVERSE LENGTH=331 | SoyBase | E_val: 1.00E-160 | ISS |
| GO:0006635 | GO-bp | Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation | SoyBase | N/A | ISS |
| GO:0006810 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transport | SoyBase | N/A | ISS |
| GO:0043132 | GO-bp | Annotation by Michelle Graham. GO Biological Process: NAD transport | SoyBase | N/A | ISS |
| GO:0044375 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of peroxisome size | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0005743 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial inner membrane | SoyBase | N/A | ISS |
| GO:0005774 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane | SoyBase | N/A | ISS |
| GO:0005777 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: peroxisome | SoyBase | N/A | ISS |
| GO:0005778 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: peroxisomal membrane | SoyBase | N/A | ISS |
| KOG0769 | KOG | Predicted mitochondrial carrier protein | JGI | ISS | |
| PTHR24089 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24089:SF36 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00153 | PFAM | Mitochondrial carrier protein | JGI | ISS | |
| UniRef100_G7KBX5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Peroxisomal membrane protein n=1 Tax=Medicago truncatula RepID=G7KBX5_MEDTR | SoyBase | E_val: 3.00E-169 | ISS |
| UniRef100_I1LMN8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LMN8_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma11g34950 not represented in the dataset |
Glyma11g34950 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma18g03400 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g227400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g34950.4 sequence type=transcript gene model=Glyma11g34950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CGAGCCTTACAAGTTAAGCAGAGTCAAGGGTAGAATGGTCTTTAAATATTTTCATAATTTTGACATTTTCTTTTCCCAAACGTAACAACCAAAGTGAAGCCACCTTGTTGTGCTGAGTCGTGTCGTGGGGGTACAGTACATCGCAGCATTCACTCTCATTGATTGAACTAAATCCAAGATCATATTTTTATTTTCAATTCCCAACCGCCATTACTACAACATAGACTAGTGCATAGTGCATAATAGGCAGTGCGGTGCATTCCCTTGTTTACCATGCTTTCCTGAGAGAGAACACTAAAACCCCTCAAATCCTCAATACAAATAGATTTTCATTCCTCCGAGGGAAAAATAAATGTCGGACGCTTTGATCAATGGATTGGCCGGAGCTGGAGGAGGGATCATTGCTCAGCTCATCACTTACCCACTTCAAACTGTAAATACTCGTCAACAAACCGAGCGTGATCCGAAGAAAGACACGAGGAGTCAAGGGACCCTTGAACGAATGTGCCAGGTTGTAAAAGAAGAGGGGTGGGAACGGTTGTATGGAGGCTTGATGCCATCGGTAGTGGGTACAGCTGCGTCTCAGGGTGTTTACTATTATCTCTATCAAATATTCAGGAACAAAGCTGAAGCAGCTGCACTACAACAAAAGAAAATGGGCGTCGGCGATGGATCAGTTGGGATGCTCTCCTCACTTGTTGTTGCTGTTTTATCTGGGTCTGTTACCGTGCTGTTGACAAATCCCATATGGGTAGTTGCTACGCGTATGCAGACACATAGAAAAGAGTTGAACAGAACTCCAGCTGATCAGGGTTTGTTAGTTTCCACTGAGCAGCCAATTCTTTCTGCAGTTGAGCATCTTCCTTATGGAACTAGTCAGGTGATTCAAGATATCTACAGTGAAGCTGGAATTTTGGGTTTCTGGAAAGGTGTATTACCAACATTAATCATGGTAAGCAATCCTTCCATACAGTTCATGCTGTATGAAGCCATGTTGGTGAAGTTAAGAAAAAGACGTGCTTGGAGTAAGAAGGGTAGCAATGGGGTAACTGCTTTAGAGATATTTCTTATTGGAGCTTTAGCTAAGCTTGGAGCTACTGTTGTAACCTATCCGATCCTAGTTGTGAAGGCAAGGCTCCAAGCTAGACAGGACAAAACTGGAGACAAGAGGCACCATTACAAAGGTACATGGGATGCTATTATAAAAATGATCCGTTATGAAGGGTTTAATGGGTTTTACAATGGTATGGGCACAAAAATTGTACAAAGTGTGCTGGCTGCTGCTGTTTTGTTCATGATGAAGGAAGAACTAGTTAGGGGGGTTCGTTTCTTGCTTGCCAATGATGCTGTAAAGCCAAAGCATCCGTGATTGAAGAGGCCACACTAGCTTGATCAAGATTTCATGATGTACCATCTTGAGGTAGCAAATTAGTTCAAATGGTAGGGGAATTAGAGTGATTCAAACAAAATATTAAGATATATGGCTGTAACTGTATCTTTGATTATTTTCATCAGGTTAGTTTCCATAGAGGAAATTCATGCCAAAAATTACATGCTGGATTCATTGGTTCGTTTCATGAACAAAACAAGGTTGTAGATTTTGAGTATGCTGCTGAAACAAATATTCTTTTTTACGAATGAATATCACTATCTGATTTCATTGGTAGCTAAAGATTTAGATCAAAATTTAAATTCATGAATATCACTATCATGTTGCTTAATCCATT
>Glyma11g34950.3 sequence type=CDS gene model=Glyma11g34950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCGGACGCTTTGATCAATGGATTGGCCGGAGCTGGAGGAGGGATCATTGCTCAGCTCATCACTTACCCACTTCAAACTGTAAATACTCGTCAACAAACCGAGCGTGATCCGAAGAAAGACACGAGGAGTCAAGGGACCCTTGAACGAATGTGCCAGGTTGTAAAAGAAGAGGGGTGGGAACGGTTGTATGGAGGCTTGATGCCATCGGTAGTGGGTACAGCTGCGTCTCAGGGTGTTTACTATTATCTCTATCAAATATTCAGGAACAAAGCTGAAGCAGCTGCACTACAACAAAAGAAAATGGGCGTCGGCGATGGATCAGTTGGGATGCTCTCCTCACTTGTTGTTGCTGTTTTATCTGGGTCTGTTACCGTGCTGTTGACAAATCCCATATGGGTAGTTGCTACGCGTATGCAGACACATAGAAAAGAGTTGAACAGAACTCCAGCTGATCAGGGTTTGTTAGTTTCCACTGAGCAGCCAATTCTTTCTGCAGTTGAGCATCTTCCTTATGGAACTAGTCAGGTGATTCAAGATATCTACAGTGAAGCTGGAATTTTGGGTTTCTGGAAAGGTGTATTACCAACATTAATCATGGTAAGCAATCCTTCCATACAGTTCATGCTGTATGAAGCCATGTTGGTGAAGTTAAGAAAAAGACGTGCTTGGAGTAAGAAGGGTAGCAATGGGGTAACTGCTTTAGAGATATTTCTTATTGGAGCTTTAGCTAAGCTTGGAGCTACTGTTGTAACCTATCCGATCCTAGTTGTGAAGGCAAGGCTCCAAGCTAGACAGGACAAAACTGGAGACAAGAGGCACCATTACAAAGGTACATGGGATGCTATTATAAAAATGATCCGTTATGAAGGGTTTAATGGGTTTTACAATGGTATGGGCACAAAAATTGTACAAAGTGTGCTGGCTGCTGCTGTTTTGTTCATGATGAAGGAAGAACTAGTTAGGGGGGTTCGTTTCTTGCTTGCCAATGATGCTGTAAAGCCAAAGCATCCGTGA >Glyma11g34950.4 sequence type=CDS gene model=Glyma11g34950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCGGACGCTTTGATCAATGGATTGGCCGGAGCTGGAGGAGGGATCATTGCTCAGCTCATCACTTACCCACTTCAAACTGTAAATACTCGTCAACAAACCGAGCGTGATCCGAAGAAAGACACGAGGAGTCAAGGGACCCTTGAACGAATGTGCCAGGTTGTAAAAGAAGAGGGGTGGGAACGGTTGTATGGAGGCTTGATGCCATCGGTAGTGGGTACAGCTGCGTCTCAGGGTGTTTACTATTATCTCTATCAAATATTCAGGAACAAAGCTGAAGCAGCTGCACTACAACAAAAGAAAATGGGCGTCGGCGATGGATCAGTTGGGATGCTCTCCTCACTTGTTGTTGCTGTTTTATCTGGGTCTGTTACCGTGCTGTTGACAAATCCCATATGGGTAGTTGCTACGCGTATGCAGACACATAGAAAAGAGTTGAACAGAACTCCAGCTGATCAGGGTTTGTTAGTTTCCACTGAGCAGCCAATTCTTTCTGCAGTTGAGCATCTTCCTTATGGAACTAGTCAGGTGATTCAAGATATCTACAGTGAAGCTGGAATTTTGGGTTTCTGGAAAGGTGTATTACCAACATTAATCATGGTAAGCAATCCTTCCATACAGTTCATGCTGTATGAAGCCATGTTGGTGAAGTTAAGAAAAAGACGTGCTTGGAGTAAGAAGGGTAGCAATGGGGTAACTGCTTTAGAGATATTTCTTATTGGAGCTTTAGCTAAGCTTGGAGCTACTGTTGTAACCTATCCGATCCTAGTTGTGAAGGCAAGGCTCCAAGCTAGACAGGACAAAACTGGAGACAAGAGGCACCATTACAAAGGTACATGGGATGCTATTATAAAAATGATCCGTTATGAAGGGTTTAATGGGTTTTACAATGGTATGGGCACAAAAATTGTACAAAGTGTGCTGGCTGCTGCTGTTTTGTTCATGATGAAGGAAGAACTAGTTAGGGGGGTTCGTTTCTTGCTTGCCAATGATGCTGTAAAGCCAAAGCATCCGTGA
>Glyma11g34950.3 sequence type=predicted peptide gene model=Glyma11g34950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSDALINGLAGAGGGIIAQLITYPLQTVNTRQQTERDPKKDTRSQGTLERMCQVVKEEGWERLYGGLMPSVVGTAASQGVYYYLYQIFRNKAEAAALQQKKMGVGDGSVGMLSSLVVAVLSGSVTVLLTNPIWVVATRMQTHRKELNRTPADQGLLVSTEQPILSAVEHLPYGTSQVIQDIYSEAGILGFWKGVLPTLIMVSNPSIQFMLYEAMLVKLRKRRAWSKKGSNGVTALEIFLIGALAKLGATVVTYPILVVKARLQARQDKTGDKRHHYKGTWDAIIKMIRYEGFNGFYNGMGTKIVQSVLAAAVLFMMKEELVRGVRFLLANDAVKPKHP* >Glyma11g34950.4 sequence type=predicted peptide gene model=Glyma11g34950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSDALINGLAGAGGGIIAQLITYPLQTVNTRQQTERDPKKDTRSQGTLERMCQVVKEEGWERLYGGLMPSVVGTAASQGVYYYLYQIFRNKAEAAALQQKKMGVGDGSVGMLSSLVVAVLSGSVTVLLTNPIWVVATRMQTHRKELNRTPADQGLLVSTEQPILSAVEHLPYGTSQVIQDIYSEAGILGFWKGVLPTLIMVSNPSIQFMLYEAMLVKLRKRRAWSKKGSNGVTALEIFLIGALAKLGATVVTYPILVVKARLQARQDKTGDKRHHYKGTWDAIIKMIRYEGFNGFYNGMGTKIVQSVLAAAVLFMMKEELVRGVRFLLANDAVKPKHP*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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