Glyma11g34350 - SoyBase

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Report for Sequence Feature Glyma11g34350

Feature Type:	gene_model
Chromosome:	Gm11
Start:	36206857
stop:	36213677
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g34350

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G44920	AT	Annotation by Michelle Graham. TAIR10: Tetratricopeptide repeat (TPR)-like superfamily protein \| chr2:18524419-18526502 FORWARD LENGTH=224	SoyBase	E_val: 2.00E-102	ISS
GO:0006098	GO-bp	Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt	SoyBase	N/A	ISS
GO:0006636	GO-bp	Annotation by Michelle Graham. GO Biological Process: unsaturated fatty acid biosynthetic process	SoyBase	N/A	ISS
GO:0009409	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cold	SoyBase	N/A	ISS
GO:0015979	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthesis	SoyBase	N/A	ISS
GO:0015995	GO-bp	Annotation by Michelle Graham. GO Biological Process: chlorophyll biosynthetic process	SoyBase	N/A	ISS
GO:0016117	GO-bp	Annotation by Michelle Graham. GO Biological Process: carotenoid biosynthetic process	SoyBase	N/A	ISS
GO:0019288	GO-bp	Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway	SoyBase	N/A	ISS
GO:0042742	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to bacterium	SoyBase	N/A	ISS
GO:0043085	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of catalytic activity	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009534	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid	SoyBase	N/A	ISS
GO:0009535	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane	SoyBase	N/A	ISS
GO:0009543	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid lumen	SoyBase	N/A	ISS
GO:0009579	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: thylakoid	SoyBase	N/A	ISS
GO:0031977	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: thylakoid lumen	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
PTHR14136	Panther	FAMILY NOT NAMED	JGI		ISS
PF00805	PFAM	Pentapeptide repeats (8 copies)	JGI		ISS
UniRef100_I1LMI2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LMI2_SOYBN	SoyBase	E_val: 1.00E-178	ISS
UniRef100_O22160	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Thylakoid lumenal 15 kDa protein 1, chloroplastic n=1 Tax=Arabidopsis thaliana RepID=TL15A_ARATH	SoyBase	E_val: 8.00E-100	ISS

Expression Patterns of Glyma11g34350

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g34350 not represented in the dataset	Glyma11g34350 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g34350

Paralog	Evidence	Comments
Glyma18g03970	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g34350 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g222100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g34350

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma11g34350

Limit To All Plant Sequences

>Glyma11g34350.2   sequence type=transcript   gene model=Glyma11g34350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GACTCTAATAAGTCCACCGATTCTCATAGACAAGTAGAAGGGAGAGAAAATGAAATCAAAATGAGAATTATTTGTTCCACAGAAAAGCAGTGAAGGAACTCAGGTAACTCTCATGCTGGGTTGAAATCCATTCACTGTTAATCCTCCATCAACACAAATAACTTGTCCAGTGATGTAAGAGGCAGCAGGCAAAGAAAGGAAAGTCACCAACGATGACACTTCTTCCGGTTCTGCAATGCCCTTAAGAGGGGTCCGAGACAAAATATCTTCCACAAGTTTAATCGAACACATGGACATTCATAATTCTAACAACAAACAATTAAGGAGATGATATGATATGGTGATCCTTTGACCAAGCGGCATTATCCACATACACATGGTACCTATGACACTTTGTCGTGGTGAGTTGCATCTGCGTGTGACTGCAAGATATGGCTCTTGTTCTCAACGTCTCATTGTGTTCCACTTGTAAACCCCATCTTTCTCTCTCAACCTCCAATCCCAACAAAGCTTCTTCTACTTTTCCTCTTCCTCTTCCTCTTCTGGGACTCAACATAAAGAAAAGTCTCCAACCATCTCAGAAACTCACATTTTCATTGGGTGAATCCGTGTCTGGTGCCACCCTCGTTGCTCTCCTCTCTGCTTCTTTCATCTTTGTTGATCCCGCACTTGCATTCAAGGGTGGAGGGCCATACGGGCAAGAAGTGACAAGGGGACAAGATCTCACTGGGAAGGACTTCAGTGGCAAGACTCTGATCAAACAAGACTTCAAAACGTCCATACTGAGACAAGCCAATTTTAAAGGTGCAAAGTTAATAGGTGCTAGCTTCTTTGATGCTGATTTAACAGGTGCTGACCTTTCGGATGCTGATCTTAGAAATGCAGATTTTTCCCTGGCAAATGTGACAAAGGCAAATTTAAGCAATGCTAACTTGGAAGGTGCACTTGCAACAGGAAATACATCTTTTAAGGGATCAAATATTACAGGCGCTGACTTCACGGATGTACCACTAAGAGAAGATCAACGTGAATACCTCTGCAAAGTTGCTGATGGAGTGAACCCAACAACTGGAAATGCTACGCGTGATACATTGTTCTGCAATTAGTATTCCATTGCTGAATACTCACTCCAAGACCTTCAAATGTTTGCATAGAATGGTTTCATAGCTAACAAAATACTCCCTTCATGTTGCTGGAATCTTGTATTTACATAGCACCACAATTTAGATTATTTCAAATTTCCATTCCCCATACACACACTTGACAATAACATTGTGATGTAATGCTCATAACCAGCCTACCTATGTTATATATTATTATTATTGTAATCATATAGCAAAAATCCTTTCATAAATGGTAGGTATAATAATCCACAATGAAGTGGATTGGGAAAGCCAAACATGAATAAG

>Glyma11g34350.3   sequence type=transcript   gene model=Glyma11g34350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTTGCATCTGCGTGTGACTGCAAGATATGGCTCTTGTTCTCAACGTCTCATTGTGTTCCACTTGTAAACCCCATCTTTCTCTCTCAACCTCCAATCCCAACAAAGCTTCTTCTACTTTTCCTCTTCCTCTTCCTCTTCTGAAAAGTCTCCAACCATCTCAGAAACTCACATTTTCATTGGGTGAATCCGTGTCTGGTGCCACCCTCGTTGCTCTCCTCTCTGCTTCTTTCATCTTTGTTGATCCCGCACTTGCATTCAAGGGTGGAGGGCCATACGGGCAAGAAGTGACAAGGGGACAAGATCTCACTGGGAAGGACTTCAGTGGCAAGACTCTGATCAAACAAGACTTCAAAACGTCCATACTGAGACAAGCCAATTTTAAAGGTGCAAAGTTAATAGGTGCTAGCTTCTTTGATGCTGATTTAACAGGTGCTGACCTTTCGGATGCTGATCTTAGAAATGCAGATTTTTCCCTGGCAAATGTGACAAAGGCAAATTTAAGCAATGCTAACTTGGAAGGTGCACTTGCAACAGGAAATACATCTTTTAAGGGATCAAATATTACAGGCGCTGACTTCACGGATGTACCACTAAGAGAAGATCAACGTGAATACCTCTGCAAAGTTGCTGATGGAGTGAACCCAACAACTGGAAATGCTACGCGTGATACATTGTTCTGCAATTAGTATTCCATTGCTGAATACTCACTCCAAGACCTTCAAATGTTTGCATAGAATGGTTTCATAGCTAACAAAATACTCCCTTCATGTTGCTGGAATCTTGTATTTACATAGCACCACAATTTAGATTATTTCAAATTTCCATTCCCCATACACACACTTGACAATAACATTGTGATGTAATGCTCATAACCAGCCTACCTATGTTATATATTATTATTATTGTAATCATATAGCAAAAATCCTTTCAT

Coding sequences of Glyma11g34350

Limit To All Plant Sequences

>Glyma11g34350.1   sequence type=CDS   gene model=Glyma11g34350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCTTGTTCTCAACGTCTCATTGTGTTCCACTTGTAAACCCCATCTTTCTCTCTCAACCTCCAATCCCAACAAAGCTTCTTCTACTTTTCCTCTTCCTCTTCCTCTTCTGGTTCGTATACTATACTTATACCCTTCTCTTAAACAATTCCCACTCTTTGTTCCCTCTGCTTCATTTCACTCATCTTCACAGGGACTCAACATAAAGAAAAGTCTCCAACCATCTCAGAAACTCACATTTTCATTGGGTGAATCCGTGTCTGGTGCCACCCTCGTTGCTCTCCTCTCTGCTTCTTTCATCTTTGTTGATCCCGCACTTGCATTCAAGGGTGGAGGGCCATACGGGCAAGAAGTGACAAGGGGACAAGATCTCACTGGGAAGGACTTCAGTGGCAAGACTCTGATCAAACAAGACTTCAAAACGTCCATACTGAGACAAGCCAATTTTAAAGGTGCAAAGTTAATAGGTGCTAGCTTCTTTGATGCTGATTTAACAGGTGCTGACCTTTCGGATGCTGATCTTAGAAATGCAGATTTTTCCCTGGCAAATGTGACAAAGGCAAATTTAAGCAATGCTAACTTGGAAGGTGCACTTGCAACAGGAAATACATCTTTTAAGGGATCAAATATTACAGGCGCTGACTTCACGGATGTACCACTAAGAGAAGATCAACGTGAATACCTCTGCAAAGTTGCTGATGGAGTGAACCCAACAACTGGAAATGCTACGCGTGATACATTGTTCTGCAATTAG

>Glyma11g34350.2   sequence type=CDS   gene model=Glyma11g34350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCTTGTTCTCAACGTCTCATTGTGTTCCACTTGTAAACCCCATCTTTCTCTCTCAACCTCCAATCCCAACAAAGCTTCTTCTACTTTTCCTCTTCCTCTTCCTCTTCTGGGACTCAACATAAAGAAAAGTCTCCAACCATCTCAGAAACTCACATTTTCATTGGGTGAATCCGTGTCTGGTGCCACCCTCGTTGCTCTCCTCTCTGCTTCTTTCATCTTTGTTGATCCCGCACTTGCATTCAAGGGTGGAGGGCCATACGGGCAAGAAGTGACAAGGGGACAAGATCTCACTGGGAAGGACTTCAGTGGCAAGACTCTGATCAAACAAGACTTCAAAACGTCCATACTGAGACAAGCCAATTTTAAAGGTGCAAAGTTAATAGGTGCTAGCTTCTTTGATGCTGATTTAACAGGTGCTGACCTTTCGGATGCTGATCTTAGAAATGCAGATTTTTCCCTGGCAAATGTGACAAAGGCAAATTTAAGCAATGCTAACTTGGAAGGTGCACTTGCAACAGGAAATACATCTTTTAAGGGATCAAATATTACAGGCGCTGACTTCACGGATGTACCACTAAGAGAAGATCAACGTGAATACCTCTGCAAAGTTGCTGATGGAGTGAACCCAACAACTGGAAATGCTACGCGTGATACATTGTTCTGCAATTAG

>Glyma11g34350.3   sequence type=CDS   gene model=Glyma11g34350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCTTGTTCTCAACGTCTCATTGTGTTCCACTTGTAAACCCCATCTTTCTCTCTCAACCTCCAATCCCAACAAAGCTTCTTCTACTTTTCCTCTTCCTCTTCCTCTTCTGAAAAGTCTCCAACCATCTCAGAAACTCACATTTTCATTGGGTGAATCCGTGTCTGGTGCCACCCTCGTTGCTCTCCTCTCTGCTTCTTTCATCTTTGTTGATCCCGCACTTGCATTCAAGGGTGGAGGGCCATACGGGCAAGAAGTGACAAGGGGACAAGATCTCACTGGGAAGGACTTCAGTGGCAAGACTCTGATCAAACAAGACTTCAAAACGTCCATACTGAGACAAGCCAATTTTAAAGGTGCAAAGTTAATAGGTGCTAGCTTCTTTGATGCTGATTTAACAGGTGCTGACCTTTCGGATGCTGATCTTAGAAATGCAGATTTTTCCCTGGCAAATGTGACAAAGGCAAATTTAAGCAATGCTAACTTGGAAGGTGCACTTGCAACAGGAAATACATCTTTTAAGGGATCAAATATTACAGGCGCTGACTTCACGGATGTACCACTAAGAGAAGATCAACGTGAATACCTCTGCAAAGTTGCTGATGGAGTGAACCCAACAACTGGAAATGCTACGCGTGATACATTGTTCTGCAATTAG

Predicted protein sequences of Glyma11g34350

Limit To All Plant Sequences

>Glyma11g34350.1   sequence type=predicted peptide   gene model=Glyma11g34350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALVLNVSLCSTCKPHLSLSTSNPNKASSTFPLPLPLLVRILYLYPSLKQFPLFVPSASFHSSSQGLNIKKSLQPSQKLTFSLGESVSGATLVALLSASFIFVDPALAFKGGGPYGQEVTRGQDLTGKDFSGKTLIKQDFKTSILRQANFKGAKLIGASFFDADLTGADLSDADLRNADFSLANVTKANLSNANLEGALATGNTSFKGSNITGADFTDVPLREDQREYLCKVADGVNPTTGNATRDTLFCN*

>Glyma11g34350.2   sequence type=predicted peptide   gene model=Glyma11g34350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALVLNVSLCSTCKPHLSLSTSNPNKASSTFPLPLPLLGLNIKKSLQPSQKLTFSLGESVSGATLVALLSASFIFVDPALAFKGGGPYGQEVTRGQDLTGKDFSGKTLIKQDFKTSILRQANFKGAKLIGASFFDADLTGADLSDADLRNADFSLANVTKANLSNANLEGALATGNTSFKGSNITGADFTDVPLREDQREYLCKVADGVNPTTGNATRDTLFCN*

>Glyma11g34350.3   sequence type=predicted peptide   gene model=Glyma11g34350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALVLNVSLCSTCKPHLSLSTSNPNKASSTFPLPLPLLKSLQPSQKLTFSLGESVSGATLVALLSASFIFVDPALAFKGGGPYGQEVTRGQDLTGKDFSGKTLIKQDFKTSILRQANFKGAKLIGASFFDADLTGADLSDADLRNADFSLANVTKANLSNANLEGALATGNTSFKGSNITGADFTDVPLREDQREYLCKVADGVNPTTGNATRDTLFCN*

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