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Report for Sequence Feature Glyma11g34250

Feature Type:gene_model
Chromosome:Gm11
Start:36113226
stop:36120641
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma11g34250
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G55560AT Annotation by Michelle Graham. TAIR10: AT-hook protein of GA feedback 2 | chr3:20604904-20605836 REVERSE LENGTH=310 SoyBaseE_val: 2.00E-75ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
PF03479PFAM Domain of unknown function (DUF296) JGI ISS
UniRef100_B9SDZ0UniRef Annotation by Michelle Graham. Most informative UniRef hit: ESC, putative n=1 Tax=Ricinus communis RepID=B9SDZ0_RICCO SoyBaseE_val: 1.00E-99ISS
UniRef100_I1LMH6UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LMH6_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma11g34250
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g34250
ParalogEvidenceComments
Glyma18g04060 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g34250 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.11g221200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma11g34250
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma11g34250
>Glyma11g34250.1   sequence type=CDS   gene model=Glyma11g34250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGAATCGATGGTGGACTGGGAATGTGGGAATGATAAGAGAGCAAGAGTTGATGGAGAACAGCAACAACAACAACGCTACTACTACACCGACGAATAGCAGCAACAGCAACACTAATGCGAACACAAACACGACCGAGGAAGAGGTGAGCAGGGACAACGGAGAGGACCTGCAGAACCAAAACCTCGGAAGCCACGAAGGCTCGGAGCCAGGAAGCAGCGGTCGGAGGCCACGTGGCAGGCCACCTGGGTCCAAGAACAAGCCCAAGCCGCCCATAGTCATAACCAAGGAAAGTCCCAACGCACTCCGAAGCCACGTCCTGGAAATCACCTCCGGCAGTGACGTTGCTGAGAGCATCGCCGCCTTTGCCAACCGCCGCCACCGCGGCGTGTCGGTGCTCAGCGGGAGTGGCATTGTTGCCAACGTCACTCTCCGCCAGCCTGCCGCCCCGGCCGGCGTCATAACGCTCCATGGGAGGTTCGAGATACTGTCCCTCTCGGGAGCCTTTTTGCCGTCCCCCTCGCCGCCGGGAGCCACGGGACTAACTGTCTATTTGGCTGGCGGGCAGGGGCAGGTTGTCGGTGGCACTGTCGCCGGCTCGCTCGTTGCCTCCGGGCCCGTGATGGTGATCGCCGCCACTTTTGCTAATGCCACCTATGAGAGGTTGCCACTGGAGGATGAACAAGGTGAGGAGGGAATGCAAGTGCAACAGCAGCAGCAGCAGCAGCAGCAGCAACAATCTCAAGGTTTGGGTGAACAGGTTTCAATGCCTATGTATAATTTGCCTCCTAATTTGCTACACAATGGTCAGAACATGCCTCATGATGTGCTTTGGGGAGCTCCACCTCGCCCTCCTCCTTCCTTCTAA
Predicted protein sequences of Glyma11g34250
>Glyma11g34250.1   sequence type=predicted peptide   gene model=Glyma11g34250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MANRWWTGNVGMIREQELMENSNNNNATTTPTNSSNSNTNANTNTTEEEVSRDNGEDLQNQNLGSHEGSEPGSSGRRPRGRPPGSKNKPKPPIVITKESPNALRSHVLEITSGSDVAESIAAFANRRHRGVSVLSGSGIVANVTLRQPAAPAGVITLHGRFEILSLSGAFLPSPSPPGATGLTVYLAGGQGQVVGGTVAGSLVASGPVMVIAATFANATYERLPLEDEQGEEGMQVQQQQQQQQQQQSQGLGEQVSMPMYNLPPNLLHNGQNMPHDVLWGAPPRPPPSF*






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