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Report for Sequence Feature Glyma11g34230

Feature Type:gene_model
Chromosome:Gm11
Start:36096507
stop:36100186
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma11g34230
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G39730AT Annotation by Michelle Graham. TAIR10: rubisco activase | chr2:16571046-16573345 REVERSE LENGTH=446 SoyBaseE_val: 0ISS
GO:0000165GO-bp Annotation by Michelle Graham. GO Biological Process: MAPK cascade SoyBaseN/AISS
GO:0006612GO-bp Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane SoyBaseN/AISS
GO:0009409GO-bp Annotation by Michelle Graham. GO Biological Process: response to cold SoyBaseN/AISS
GO:0009416GO-bp Annotation by Michelle Graham. GO Biological Process: response to light stimulus SoyBaseN/AISS
GO:0009595GO-bp Annotation by Michelle Graham. GO Biological Process: detection of biotic stimulus SoyBaseN/AISS
GO:0009637GO-bp Annotation by Michelle Graham. GO Biological Process: response to blue light SoyBaseN/AISS
GO:0009644GO-bp Annotation by Michelle Graham. GO Biological Process: response to high light intensity SoyBaseN/AISS
GO:0009697GO-bp Annotation by Michelle Graham. GO Biological Process: salicylic acid biosynthetic process SoyBaseN/AISS
GO:0009744GO-bp Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus SoyBaseN/AISS
GO:0009753GO-bp Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus SoyBaseN/AISS
GO:0009814GO-bp Annotation by Michelle Graham. GO Biological Process: defense response, incompatible interaction SoyBaseN/AISS
GO:0009862GO-bp Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway SoyBaseN/AISS
GO:0009867GO-bp Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway SoyBaseN/AISS
GO:0010114GO-bp Annotation by Michelle Graham. GO Biological Process: response to red light SoyBaseN/AISS
GO:0010150GO-bp Annotation by Michelle Graham. GO Biological Process: leaf senescence SoyBaseN/AISS
GO:0010155GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of proton transport SoyBaseN/AISS
GO:0010200GO-bp Annotation by Michelle Graham. GO Biological Process: response to chitin SoyBaseN/AISS
GO:0010218GO-bp Annotation by Michelle Graham. GO Biological Process: response to far red light SoyBaseN/AISS
GO:0010310GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of hydrogen peroxide metabolic process SoyBaseN/AISS
GO:0010363GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response SoyBaseN/AISS
GO:0019684GO-bp Annotation by Michelle Graham. GO Biological Process: photosynthesis, light reaction SoyBaseN/AISS
GO:0031348GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response SoyBaseN/AISS
GO:0042742GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to bacterium SoyBaseN/AISS
GO:0043900GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of multi-organism process SoyBaseN/AISS
GO:0050832GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to fungus SoyBaseN/AISS
GO:0005618GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cell wall SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009535GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane SoyBaseN/AISS
GO:0009570GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma SoyBaseN/AISS
GO:0009579GO-cc Annotation by Michelle Graham. GO Cellular Compartment: thylakoid SoyBaseN/AISS
GO:0009941GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope SoyBaseN/AISS
GO:0010287GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plastoglobule SoyBaseN/AISS
GO:0010319GO-cc Annotation by Michelle Graham. GO Cellular Compartment: stromule SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0048046GO-cc Annotation by Michelle Graham. GO Cellular Compartment: apoplast SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0030234GO-mf Annotation by Michelle Graham. GO Molecular Function: enzyme regulator activity SoyBaseN/AISS
GO:0043531GO-mf Annotation by Michelle Graham. GO Molecular Function: ADP binding SoyBaseN/AISS
GO:0046863GO-mf Annotation by Michelle Graham. GO Molecular Function: ribulose-1,5-bisphosphate carboxylase/oxygenase activator activity SoyBaseN/AISS
KOG0651 KOG 26S proteasome regulatory complex, ATPase RPT4 JGI ISS
PTHR11603Panther AAA FAMILY ATPASE JGI ISS
PTHR11603:SF153Panther JGI ISS
PF00004PFAM ATPase family associated with various cellular activities (AAA) JGI ISS
UniRef100_D4N5G3UniRef Annotation by Michelle Graham. Best UniRef hit: Rubisco activase n=1 Tax=Glycine max RepID=D4N5G3_SOYBN SoyBaseE_val: 0ISS
UniRef100_D4N5G3UniRef Annotation by Michelle Graham. Most informative UniRef hit: Rubisco activase n=1 Tax=Glycine max RepID=D4N5G3_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma11g34230
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g34230 not represented in the dataset
Glyma11g34230 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g34230
ParalogEvidenceComments
Glyma18g04081 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g34230 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.11g221000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma11g34230
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma11g34230
>Glyma11g34230.5   sequence type=transcript   gene model=Glyma11g34230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CACTCACTCCACCAAGCAACTACTATAAGTCACAGCCTCATTCATGGTCACAAGCCACTTAGCACTGAGTCTTGCAATTGAAGTTGAAGTCTTGCCCTTCTCTCTTCAACTCCAAACACAAGACATCATCATCCATGGCTGCCTCCGTCTCCACTGTCGGAGCTGTCAACAGAGCTCTTTTGAACCTGAATGGGTCTGGACCTGGGGTTTCAGCTCCCAGTTCATCCTTCTTTGGGAGCAGCTTGAAGAAGGTTATTGGCTCAAGGGTCCCCAACACAAAGATTTCCTCTGGAAGCTTCAAGATTGTTGCTGTAGAAGAGAAGAAAGAGATTGAAGAGACCCAGCAGACCGACAAGGACAGATGGAAGGGTCTTGCCTATGATATCTCAGACGACCAACAGGACATCACAAGAGGAAAGGGTTTGGTTGACTCCCTTTTCCAAGCTCCACAGGATGCTGGAACTCACTATGCTGTCATGAGCTCCTACGAGTACCTTAGCACTGGACTTCGCCAGTACTTGGACAACAACATGGATGGATTTTACATTGCTCCAGCTTTTATGGACAAACTTGTTGTTCACATTACCAAGAACTTCATGACCCTGCCCAACATCAAGGTTCCTCTCATTCTTGGTATCTGGGGAGGCAAGGGACAAGGAAAATCTTTCCAATGTGAGCTTGTCTTTGCCAAGATGGGAATCAACCCCATCATGATGAGTGCTGGAGAGTTGGAAAGTGGAAATGCAGGAGAGCCAGCAAAACTGATCAGGCAGAGATACCGTGAAGCCGCAGACTTGATCAAGAAGGGAAAGATGTGTGCTCTCTTCATCAACGATCTTGATGCAGGAGCTGGTCGTCTTGGTGGAACCACCCAATACACTGTCAACAACCAGATGGTGAATGCCACCCTCATGAACATTGCTGATAACCCCACCAATGTGCAGCTTCCTGGTATGTATAACAAGGAAGAGAATCCCCGTGTGCCCATCATCGTCACCGGTAACGATTTCTCCACACTCTATGCGCCTCTCATCCGTGATGGGCGTATGGAGAAGTTCTACTGGGCACCAACAAGGGATGACCGCATTGGTGTCTGCACTGGAATTTTTCGCACCGATTCAATTCCTGAACAGGACGTTGTCAAGATTGTTGACACCTTCCCTGGCCAATCCATTGATTTCTTTGGTGCACTGAGGGCCAGAGTATATGATGACGAAGTGAGGAAGTGGATTTCTGGTGTTGGTGTTGACGGCATTGGGAAGAAGCTTGTGAACTCAAAAGATGGACCTCCAACCTTTGAGCAGCCCAAGATGACTCTGGAGAAGCTCTTGACGTATGGTAACATGCTTGTCCAAGAACAAGAGAATGTCAAGAGAGTCCAATTGGCTGACAAGTACTTGAACGAGGCTGCACTTGGAAATGCTAACGAGGATGCTATTAACAGGGGAACTTTCTTCCAATCTTGAATTGGAGGTTTGTATAATGTTTCTCTAACTTGCAAAAATAATGTTAGGTTCAAAGTATAACTTGGTCTAAAAATGTTGAATTTCTTTTTTTTTTTTTTCTGTGCAGGCAAAGCAAACTTGGCAAGTAAATATTTCTGTTCCTGAAGGTTGTGCTGATCCAAGTGCTAGAAGTTGTGATGGGACTTGCGTGTAACATTCTTAGAATTCTCAATGTCTTAGGTGCAAAGAGAAGATGCCAAGTTTGAGATGATTTTACTATATTTTTCATATTGGACTGTCTTCCTCTATAATTTTGAGTTAAAGTGTCCACTTAAATTGAATTTGGTGCCTTTTCCTTTTGTCCTAAATTCTTGATTTTTTATGCTTTAAATTTATATCTTTTGTTTGACGTAC

>Glyma11g34230.6   sequence type=transcript   gene model=Glyma11g34230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATAAGTCACAGCCTCATTCATGGTCACAAGCCACTTAGCACTGAGTCTTGCAATTGAAGTTGAAGTCTTGCCCTTCTCTCTTCAACTCCAAACACAAGACATCATCATCCATGGCTGCCTCCGTCTCCACTGTCGGAGCTGTCAACAGAGCTCTTTTGAACCTGAATGGGTCTGGACCTGGGGTTTCAGCTCCCAGTTCATCCTTCTTTGGGAGCAGCTTGAAGAAGGTTATTGGCTCAAGGGTCCCCAACACAAAGATTTCCTCTGGAAGCTTCAAGATTGTTGCTGTAGAAGAGAAGAAAGAGATTGAAGAGACCCAGCAGACCGACAAGGACAGATGGAAGGGTCTTGCCTATGATATCTCAGACGACCAACAGGACATCACAAGAGGAAAGGGTTTGGTTGACTCCCTTTTCCAAGCTCCACAGGATGCTGGAACTCACTATGCTGTCATGAGCTCCTACGAGTACCTTAGCACTGGACTTCGCCAGTACTTGGACAACAACATGGATGGATTTTACATTGCTCCAGCTTTTATGGACAAACTTGTTGTTCACATTACCAAGAACTTCATGACCCTGCCCAACATCAAGGCATGCCACTACAAACATATTAATTCTTTGCATAAACTGAACAGTTAGACTTTTGCAAAATTGGGAGACACATTCATTTTTTTTTCTTCAATATTTTACCAGGTTCCTCTCATTCTTGGTATCTGGGGAGGCAAGGGACAAGGAAAATCTTTCCAATGTGAGCTTGTCTTTGCCAAGATGGGAATCAAGTGAGTTTCTTGCTGAACTAGCCCCTCCATTATGTGCATTTTTCAAAAATTCAGTTAGATCATCCAAAACCACATTGAAATATCAGCAAACATAATTTTAAATATAAAATCACTTGTTCAGTCTTATGTTGAACAATTATTATGAGTCCAAAATTGATTTTGACTTTAAACAACTTTAACTTTAAGTAACT
Coding sequences of Glyma11g34230
>Glyma11g34230.4   sequence type=CDS   gene model=Glyma11g34230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGCCTCCGTCTCCACTGTCGGAGCTGTCAACAGAGCTCTTTTGAACCTGAATGGGTCTGGACCTGGGGTTTCAGCTCCCAGTTCATCCTTCTTTGGGAGCAGCTTGAAGAAGGTTATTGGCTCAAGGGTCCCCAACACAAAGATTTCCTCTGGAAGCTTCAAGATTGTTGCTGTAGAAGAGAAGAAAGAGATTGAAGAGACCCAGCAGACCGACAAGGACAGATGGAAGGGTCTTGCCTATGATATCTCAGACGACCAACAGGACATCACAAGAGGAAAGGGTTTGGTTGACTCCCTTTTCCAAGCTCCACAGGATGCTGGAACTCACTATGCTGTCATGAGCTCCTACGAGTACCTTAGCACTGGACTTCGCCAGTACTTGGACAACAACATGGATGGATTTTACATTGCTCCAGCTTTTATGGACAAACTTGTTGTTCACATTACCAAGAACTTCATGACCCTGCCCAACATCAAGGTTCCTCTCATTCTTGGTATCTGGGGAGGCAAGGGACAAGGAAAATCTTTCCAATGTGAGCTTGTCTTTGCCAAGATGGGAATCAACCCCATCATGATGAGTGCTGGAGAGTTGGAAAGTGGAAATGCAGGAGAGCCAGCAAAACTGATCAGGCAGAGATACCGTGAAGCCGCAGACTTGATCAAGAAGGGAAAGATGTGTGCTCTCTTCATCAACGATCTTGATGCAGGAGCTGGTCGTCTTGGTGGAACCACCCAATACACTGTCAACAACCAGATGGTGAATGCCACCCTCATGAACATTGCTGATAACCCCACCAATGTGCAGCTTCCTGGTATGTATAACAAGGAAGAGAATCCCCGTGTGCCCATCATCGTCACCGGTAACGATTTCTCCACACTCTATGCGCCTCTCATCCGTGATGGGCGTATGGAGAAGTTCTACTGGGCACCAACAAGGGATGACCGCATTGGTGTCTGCACTGGAATTTTTCGCACCGATTCAATTCCTGAACAGGACGTTGTCAAGATTGTTGACACCTTCCCTGGCCAATCCATTGATTTCTTTGGTGCACTGAGGGCCAGAGTATATGATGACGAAGTGAGGAAGTGGATTTCTGGTGTTGGTGTTGACGGCATTGGGAAGAAGCTTGTGAACTCAAAAGATGGACCTCCAACCTTTGAGCAGCCCAAGATGACTCTGGAGAAGCTCTTGACGTATGGTAACATGCTTGTCCAAGAACAAGAGAATGTCAAGAGAGTCCAATTGGCTGACAAGTACTTGAACGAGGCTGCACTTGGAAATGCTAACGAGGATGCTATTAACAGGGGAACTTTCTTCCAATCTTGA

>Glyma11g34230.5   sequence type=CDS   gene model=Glyma11g34230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGCCTCCGTCTCCACTGTCGGAGCTGTCAACAGAGCTCTTTTGAACCTGAATGGGTCTGGACCTGGGGTTTCAGCTCCCAGTTCATCCTTCTTTGGGAGCAGCTTGAAGAAGGTTATTGGCTCAAGGGTCCCCAACACAAAGATTTCCTCTGGAAGCTTCAAGATTGTTGCTGTAGAAGAGAAGAAAGAGATTGAAGAGACCCAGCAGACCGACAAGGACAGATGGAAGGGTCTTGCCTATGATATCTCAGACGACCAACAGGACATCACAAGAGGAAAGGGTTTGGTTGACTCCCTTTTCCAAGCTCCACAGGATGCTGGAACTCACTATGCTGTCATGAGCTCCTACGAGTACCTTAGCACTGGACTTCGCCAGTACTTGGACAACAACATGGATGGATTTTACATTGCTCCAGCTTTTATGGACAAACTTGTTGTTCACATTACCAAGAACTTCATGACCCTGCCCAACATCAAGGTTCCTCTCATTCTTGGTATCTGGGGAGGCAAGGGACAAGGAAAATCTTTCCAATGTGAGCTTGTCTTTGCCAAGATGGGAATCAACCCCATCATGATGAGTGCTGGAGAGTTGGAAAGTGGAAATGCAGGAGAGCCAGCAAAACTGATCAGGCAGAGATACCGTGAAGCCGCAGACTTGATCAAGAAGGGAAAGATGTGTGCTCTCTTCATCAACGATCTTGATGCAGGAGCTGGTCGTCTTGGTGGAACCACCCAATACACTGTCAACAACCAGATGGTGAATGCCACCCTCATGAACATTGCTGATAACCCCACCAATGTGCAGCTTCCTGGTATGTATAACAAGGAAGAGAATCCCCGTGTGCCCATCATCGTCACCGGTAACGATTTCTCCACACTCTATGCGCCTCTCATCCGTGATGGGCGTATGGAGAAGTTCTACTGGGCACCAACAAGGGATGACCGCATTGGTGTCTGCACTGGAATTTTTCGCACCGATTCAATTCCTGAACAGGACGTTGTCAAGATTGTTGACACCTTCCCTGGCCAATCCATTGATTTCTTTGGTGCACTGAGGGCCAGAGTATATGATGACGAAGTGAGGAAGTGGATTTCTGGTGTTGGTGTTGACGGCATTGGGAAGAAGCTTGTGAACTCAAAAGATGGACCTCCAACCTTTGAGCAGCCCAAGATGACTCTGGAGAAGCTCTTGACGTATGGTAACATGCTTGTCCAAGAACAAGAGAATGTCAAGAGAGTCCAATTGGCTGACAAGTACTTGAACGAGGCTGCACTTGGAAATGCTAACGAGGATGCTATTAACAGGGGAACTTTCTTCCAATCTTGA

>Glyma11g34230.6   sequence type=CDS   gene model=Glyma11g34230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGCCTCCGTCTCCACTGTCGGAGCTGTCAACAGAGCTCTTTTGAACCTGAATGGGTCTGGACCTGGGGTTTCAGCTCCCAGTTCATCCTTCTTTGGGAGCAGCTTGAAGAAGGTTATTGGCTCAAGGGTCCCCAACACAAAGATTTCCTCTGGAAGCTTCAAGATTGTTGCTGTAGAAGAGAAGAAAGAGATTGAAGAGACCCAGCAGACCGACAAGGACAGATGGAAGGGTCTTGCCTATGATATCTCAGACGACCAACAGGACATCACAAGAGGAAAGGGTTTGGTTGACTCCCTTTTCCAAGCTCCACAGGATGCTGGAACTCACTATGCTGTCATGAGCTCCTACGAGTACCTTAGCACTGGACTTCGCCAGTACTTGGACAACAACATGGATGGATTTTACATTGCTCCAGCTTTTATGGACAAACTTGTTGTTCACATTACCAAGAACTTCATGACCCTGCCCAACATCAAGGCATGCCACTACAAACATATTAATTCTTTGCATAAACTGAACAGTTAG
Predicted protein sequences of Glyma11g34230
>Glyma11g34230.4   sequence type=predicted peptide   gene model=Glyma11g34230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAASVSTVGAVNRALLNLNGSGPGVSAPSSSFFGSSLKKVIGSRVPNTKISSGSFKIVAVEEKKEIEETQQTDKDRWKGLAYDISDDQQDITRGKGLVDSLFQAPQDAGTHYAVMSSYEYLSTGLRQYLDNNMDGFYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKKGKMCALFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCTGIFRTDSIPEQDVVKIVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVDGIGKKLVNSKDGPPTFEQPKMTLEKLLTYGNMLVQEQENVKRVQLADKYLNEAALGNANEDAINRGTFFQS*

>Glyma11g34230.5   sequence type=predicted peptide   gene model=Glyma11g34230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAASVSTVGAVNRALLNLNGSGPGVSAPSSSFFGSSLKKVIGSRVPNTKISSGSFKIVAVEEKKEIEETQQTDKDRWKGLAYDISDDQQDITRGKGLVDSLFQAPQDAGTHYAVMSSYEYLSTGLRQYLDNNMDGFYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKKGKMCALFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCTGIFRTDSIPEQDVVKIVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVDGIGKKLVNSKDGPPTFEQPKMTLEKLLTYGNMLVQEQENVKRVQLADKYLNEAALGNANEDAINRGTFFQS*

>Glyma11g34230.6   sequence type=predicted peptide   gene model=Glyma11g34230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAASVSTVGAVNRALLNLNGSGPGVSAPSSSFFGSSLKKVIGSRVPNTKISSGSFKIVAVEEKKEIEETQQTDKDRWKGLAYDISDDQQDITRGKGLVDSLFQAPQDAGTHYAVMSSYEYLSTGLRQYLDNNMDGFYIAPAFMDKLVVHITKNFMTLPNIKACHYKHINSLHKLNS*






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