Glyma11g33970 - SoyBase

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Report for Sequence Feature Glyma11g33970

Feature Type:	gene_model
Chromosome:	Gm11
Start:	35812211
stop:	35820763
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g33970

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G37850	AT	Annotation by Michelle Graham. TAIR10: pfkB-like carbohydrate kinase family protein \| chr5:15065621-15068783 FORWARD LENGTH=309	SoyBase	E_val: 0	ISS
GO:0008615	GO-bp	Annotation by Michelle Graham. GO Biological Process: pyridoxine biosynthetic process	SoyBase	N/A	ISS
GO:0009443	GO-bp	Annotation by Michelle Graham. GO Biological Process: pyridoxal 5'-phosphate salvage	SoyBase	N/A	ISS
GO:0010054	GO-bp	Annotation by Michelle Graham. GO Biological Process: trichoblast differentiation	SoyBase	N/A	ISS
GO:0042538	GO-bp	Annotation by Michelle Graham. GO Biological Process: hyperosmotic salinity response	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0008478	GO-mf	Annotation by Michelle Graham. GO Molecular Function: pyridoxal kinase activity	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
KOG2599	KOG	Pyridoxal/pyridoxine/pyridoxamine kinase	JGI		ISS
PTHR10534	Panther	PYRIDOXINE KINASE	JGI		ISS
PF08543	PFAM	Phosphomethylpyrimidine kinase	JGI		ISS
UniRef100_I1LME8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1LME8_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q4JR83	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pyridoxal kinase n=1 Tax=Glycine max RepID=Q4JR83_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma11g33970

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma11g33970 not represented in the dataset	Glyma11g33970 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g33970

Paralog	Evidence	Comments
Glyma18g04360	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g33970 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g218700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g33970

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma11g33970

Limit To All Plant Sequences

>Glyma11g33970.2   sequence type=transcript   gene model=Glyma11g33970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACCTCACCGCATTCGCTTTTCATTCCAATTTTCGTCGTCTTTGACCGATTTCGTTTTTCAAGGGCACGAAACTCGAGGAATTCGCGCATGGCGCCTCCCATCCTCTCCCTCGCTCTTCCCTCAAACACCGGTCGAGTTCTCAGCATTCAATCTCACACCGTTCAGGGGTATGTTGGTAATAAATCCGCTGTCTTCCCTCTGCAATTACTGGGATATGATGTGGATCCAATTAATTCTGTGCAGTTTTCGAATCATACAGGATACCCAACGTTTAAGGGTCAGGTTTTGAATGGACAGCAACTCTGGGATCTAATAGAAGGCCTTGAAGGAAATGATTTATTGTTCTATACTCACTTGTTAACAGGTTATATTGGTTCAGAGTCTTTTCTAAACACTGTATTGCAAGTTGTCAACAAACTTCGGTCAACAAACCCAGGTCTTACATATGTATGTGATCCAGTGATGGGTGATGAAGGAAAGCTTTATGTTCCTCAAGAGCTAGTATCAGTCTATCGTGAGAAGGTTGTCCCAGTAGCTTCAGTGTTGACTCCCAACCAGTTTGAGGCAGAACTACTGACAGGCTTCAGGATTCAGTCTGAAGGACATGGGCGGGAGGCCTGTAGGCTTCTCCATGCAGCTGGGCCTTCAAAGGGAACGGGAGATCTCATGACTGCACTTCTTCTTGGTTGGAGCAATAAATACCCAGACAACCTTGAGATTGCTGCAGAACTTGCAGTGTCAAGCTTGCAGGCAGTTTTGCACAGGACACTTAGTGACTACAAAAGCGCTGGACATGATTCTGAGTCAACCAGTTTAGAGATTAGATTAATTCAAAGTCAGGATGATATTCGCACCCCACAAGTAAAACTTAAAGCTGAAATATACAGCTAAATTGGTGATACAAATTGAACATGTATGTATTTGCCTGTATTATTAAAATTTTTTTAAAGGATGTCGGCAGTTACAAGAAATTAAGAATAAAGTTGCTTCATTTGTCTCCTATTTATTGATCAAATATAGAAATTGGAAAGTTATTTAAAGCTAACTTTACTATTTACCAATATGACCCAATTATGTTGCGTTTGGTAAAGGTTGAAATAAAGATTAGCTGGTTGAATTTATTATTCCTTTCTTTACTGTCTTCACAATTTCATATCTAGCGATTACATCCCAACTTTAATTAATATTGAGAAAGTAAAATAAATGTGTGATACAATTATCTTTGCACTGACATGGAAACAGGAGACTGAATTGCTAATGTTACATGTTTTCACTAGGTTGAGATGCCAATTGAGTCTAACTAATAAGGATTCTTAAACTCTTGCACCGAGTTTGGACTTTATATTTAATGAGCTTGAAGTTTGAATTTCATCTTTATTGTATGAAAACTTTTGTGATGATATTTTCTTGAATATATTTTTTGAGTTTTAGCGATAATGTTTGAAAAATTTGTATAAGAATCAGAATGTGCAGAGTTTAGATATGAATGTGGAAAAATGGATATATCTTGTCTAATTTTTTATGTTGGCATAAAGTTCTTATAATTGATTTGATATGCTTTCATGTAAATGATAGCTTTATAGGAGAACTTGAAAGAGTCAAACTTAAAAGGCAATGAGAAATGACTTTGGTTTGTCACATGCTAATGATGCATGTATGCATTCATCATCACATCAGTTGGCATCCTCCATGTGGATGTTAATTGTTCAGGTCCATGATGATAGGACGAAAACTGCATCATATTTGATGGATGAAATTCATGATGGTATCCATGTATGTTGGCCATAGGAGATGGTTGATGACCATATTTGCTAGTTGATGACACTCCAGGGAAGTTACGTGCCCATTCTTGGTTCTCTAAGCCAGAATTAATAGCTTCACTATTCTCATAAAAACTTGCGGGCCTCATCACGGGTATCATACTCTCTTCCCATCTGGGATTTTCATTAATTATGGTGAAATTTTGTTTGGTTCTATTTTTAACATTATCCAAAAACAATGGTGCTGCATAATGATGATTAATCTTACTTTCCATGGTTTTGAAACCCGTAACCGGATTAAAACCCCGTTGGGGTACCCAGTGATCTTCACCAAAGGTGGTAATCATATACTAATTTTCAGAGTCACTAGGACCGTTTATTATTTGAGTTTGGTTATTGTCCTGATGACCGTTGTGTCCTGCTTTCCATATCTCTGCATGTTTTCCAAATTTGACTAACTTCTGGACCAAAGTGGATGGATCGACAATGCCTGTGACAATTGCCTTCTGCTCTTCTGCATTAATATCTACTTTGCAGACACCTGGAGATATACAATGGAAAATGGTTAACTTACATCTTCAACCTGCACATGTGCAATTAGAAACCAAACAGGGAAATAGAATTCAAAAGG

>Glyma11g33970.3   sequence type=transcript   gene model=Glyma11g33970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACCTCACCGCATTCGCTTTTCATTCCAATTTTCGTCGTCTTTGACCGATTTCGTTTTTCAAGGGCACGAAACTCGAGGAATTCGCGCATGGCGCCTCCCATCCTCTCCCTCGCTCTTCCCTCAAACACCGGTCGAGTTCTCAGCATTCAATCTCACACCGTTCAGGGGTATGTTGGTAATAAATCCGCTGTCTTCCCTCTGCAATTACTGGGATATGATGTGGATCCAATTAATTCTGTGCAGTTTTCGAATCATACAGGATACCCAACGTTTAAGGGTCAGGTTTTGAATGGACAGCAACTCTGGGATCTAATAGAAGGCCTTGAAGGAAATGATTTATTGTTCTATACTCACTTGTTAACAGGTTATATTGGTTCAGAGTCTTTTCTAAACACTGTATTGCAAGTTGTCAACAAACTTCGGTCAACAAACCCAGGTCTTACATATGTATGTGATCCAGTGATGGGTGATGAAGGAAAGCTTTATGTTCCTCAAGAGCTAGTATCAGTCTATCGTGAGAAGGTTGTCCCAGTAGCTTCAGTGTTGACTCCCAACCAGTTTGAGGCAGAACTACTGACAGGCTTCAGGATTCAGTCTGAAGGACATGGGCGGGAGGCCTGTAGGCTTCTCCATGCAGCTGGGCCTTCAAAGGTCATAATTACAAGTATAAATATAGACGGGATTCTTCTCCTCATTGGCAGTCATCAAAAAGAAAAGGGAGAGCCTCCTAGACAATTTAGGATCGTGATTCCAAAAATACCAGCTTATTTTACGGGAACGGGAGATCTCATGACTGCACTTCTTCTTGGTTGGAGCAATAAATACCCAGACAACCTTGAGATTGCTGCAGAACTTGCAGTGTCAAGCTTGCAGGCAGTTTTGCACAGGACACTTAGTGACTACAAAAGCGCTGGACATGATTCTGAGTCAACCAGTTTAGAGATTAGATTAATTCAAAGTCAGGATGATATTCGCACCCCACAAGTAAAACTTAAAGCTGAAATATACAGCTAAATTGGTGATACAAATTGAACATGTATGTATTTGCCTGTATTATTAAAATTTTTTTAAAGGATGTCGGCAGTTACAAGAAATTAAGAATAAAGTTGCTTCATTTGTCTCCTATTTATTGATCAAATATAGAAATTGGAAAGTTATTTAAAGCTAACTTTACTATTTACCAATATGACCCAATTATGTTGCGTTTGGTAAAGGTTGAAATAAAGATTAGCTGGTTGAATTTATTATTCCTTTCTTTACTGTCTTCACAATTTCATATCTAGCGATTACATCCCAACTTTAATTAATATTGAGAAAGTAAAATAAATGTGTGATACAATTATCTTTGCACTGACATGGAAACAGGAGACTGAATTGCTAATGTTACATGTTTTCACTAGGTTGAGATGCCAATTGAGTCTAACTAATAAGGATTCTTAAACTCTTGCACCGAGTTTGGACTTTATATTTAATGAGCTTGAAGTTTGAATTTCATCTTTATTGTATGAAAACTTTTGTGATGATATTTTCTTGAATATATTTTTTGAGTTTTAGCGATAATGTTTGAAAAATTTGTATAAGAATCAGAATGTGCAGAGTTTAGATATGAATGTGGAAAAATGGATATATCTTGTCTAATTTTTTATGTTGGCATAAAGTTCTTATAATTGATTTGATATGCTTTCATGTAAATGATAGCTTTATAGGAGAACTTGAAAGAGTCAAACTTAAAAGGCAATGAGAAATGACTTTGGTTTGTCACATGCTAATGATGCATGTATGCATTCATCATCACATCAGTTGGCATCCTCCATGTGGATGTTAATTGTTCAGGTCCATGATGATAGGACGAAAACTGCATCATATTTGATGGATGAAATTCATGATGGTATCCATGTATGTTGGCCATAGGAGATGGTTGATGACCATATTTGCTAGTTGATGACACTCCAGGGAAGTTACGTGCCCATTCTTGGTTCTCTAAGCCAGAATTAATAGCTTCACTATTCTCATAAAAACTTGCGGGCCTCATCACGGGTATCATACTCTCTTCCCATCTGGGATTTTCATTAATTATGGTGAAATTTTGTTTGGTTCTATTTTTAACATTATCCAAAAACAATGGTGCTGCATAATGATGATTAATCTTACTTTCCATGGTTTTGAAACCCGTAACCGGATTAAAACCCCGTTGGGGTACCCAGTGATCTTCACCAAAGGTGGTAATCATATACTAATTTTCAGAGTCACTAGGACCGTTTATTATTTGAGTTTGGTTATTGTCCTGATGACCGTTGTGTCCTGCTTTCCATATCTCTGCATGTTTTCCAAATTTGACTAACTTCTGGACCAAAGTGGATGGATCGACAATGCCTGTGACAATTGCCTTCTGCTCTTCTGCATTAATATCTACTTTGCAGACACCTGGAGATATACAATGGAAAATGGTTAACTTACATCTTCAACCTGCACATGTGCAATTAGAAACCAAACAGGGAAATAGAATTCAAAAGG

Coding sequences of Glyma11g33970

Limit To All Plant Sequences

>Glyma11g33970.1   sequence type=CDS   gene model=Glyma11g33970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATGTAGACGCAGGAGTTGGCTGCCTCAGCGTTGAACACTGTTCCATGCTGTTAAAGCCTCCGTTCACACTCTCACACCGATTCAATTTCAGATTTTCCTGTCAAACTCGCATTTTCCGGGCACGAAACTCGAGGAATTCGCGCATGGCGCCTCCCATCCTCTCCCTCGCTCTTCCCTCAAACACCGGTCGAGTTCTCAGCATTCAATCTCACACCGTTCAGGGGTATGTTGGTAATAAATCCGCTGTCTTCCCTCTGCAATTACTGGGATATGATGTGGATCCAATTAATTCTGTGCAGTTTTCGAATCATACAGGATACCCAACGTTTAAGGGTCAGGTTTTGAATGGACAGCAACTCTGGGATCTAATAGAAGGCCTTGAAGGAAATGATTTATTGTTCTATACTCACTTGTTAACAGGTTATATTGGTTCAGAGTCTTTTCTAAACACTGTATTGCAAGTTGTCAACAAACTTCGGTCAACAAACCCAGGTCTTACATATGTATGTGATCCAGTGATGGGTGATGAAGGAAAGCTTTATGTTCCTCAAGAGCTAGTATCAGTCTATCGTGAGAAGGTTGTCCCAGTAGCTTCAGTGTTGACTCCCAACCAGTTTGAGGCAGAACTACTGACAGGCTTCAGGATTCAGTCTGAAGGACATGGGCGGGAGGCCTGTAGGCTTCTCCATGCAGCTGGGCCTTCAAAGGTCATAATTACAAGTATAAATATAGACGGGATTCTTCTCCTCATTGGCAGTCATCAAAAAGAAAAGGGAGAGCCTCCTAGACAATTTAGGATCGTGATTCCAAAAATACCAGCTTATTTTACGGGAACGGGAGATCTCATGACTGCACTTCTTCTTGGTTGGAGCAATAAATACCCAGACAACCTTGAGATTGCTGCAGAACTTGCAGTGTCAAGCTTGCAGGCAGTTTTGCACAGGACACTTAGTGACTACAAAAGCGCTGGACATGATTCTGAGTCAACCAGTTTAGAGATTAGATTAATTCAAAGTCAGGATGATATTCGCACCCCACAAGTAAAACTTAAAGCTGAAATATACAGCTAA

>Glyma11g33970.2   sequence type=CDS   gene model=Glyma11g33970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGCCTCCCATCCTCTCCCTCGCTCTTCCCTCAAACACCGGTCGAGTTCTCAGCATTCAATCTCACACCGTTCAGGGGTATGTTGGTAATAAATCCGCTGTCTTCCCTCTGCAATTACTGGGATATGATGTGGATCCAATTAATTCTGTGCAGTTTTCGAATCATACAGGATACCCAACGTTTAAGGGTCAGGTTTTGAATGGACAGCAACTCTGGGATCTAATAGAAGGCCTTGAAGGAAATGATTTATTGTTCTATACTCACTTGTTAACAGGTTATATTGGTTCAGAGTCTTTTCTAAACACTGTATTGCAAGTTGTCAACAAACTTCGGTCAACAAACCCAGGTCTTACATATGTATGTGATCCAGTGATGGGTGATGAAGGAAAGCTTTATGTTCCTCAAGAGCTAGTATCAGTCTATCGTGAGAAGGTTGTCCCAGTAGCTTCAGTGTTGACTCCCAACCAGTTTGAGGCAGAACTACTGACAGGCTTCAGGATTCAGTCTGAAGGACATGGGCGGGAGGCCTGTAGGCTTCTCCATGCAGCTGGGCCTTCAAAGGGAACGGGAGATCTCATGACTGCACTTCTTCTTGGTTGGAGCAATAAATACCCAGACAACCTTGAGATTGCTGCAGAACTTGCAGTGTCAAGCTTGCAGGCAGTTTTGCACAGGACACTTAGTGACTACAAAAGCGCTGGACATGATTCTGAGTCAACCAGTTTAGAGATTAGATTAATTCAAAGTCAGGATGATATTCGCACCCCACAAGTAAAACTTAAAGCTGAAATATACAGCTAA

>Glyma11g33970.3   sequence type=CDS   gene model=Glyma11g33970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGCCTCCCATCCTCTCCCTCGCTCTTCCCTCAAACACCGGTCGAGTTCTCAGCATTCAATCTCACACCGTTCAGGGGTATGTTGGTAATAAATCCGCTGTCTTCCCTCTGCAATTACTGGGATATGATGTGGATCCAATTAATTCTGTGCAGTTTTCGAATCATACAGGATACCCAACGTTTAAGGGTCAGGTTTTGAATGGACAGCAACTCTGGGATCTAATAGAAGGCCTTGAAGGAAATGATTTATTGTTCTATACTCACTTGTTAACAGGTTATATTGGTTCAGAGTCTTTTCTAAACACTGTATTGCAAGTTGTCAACAAACTTCGGTCAACAAACCCAGGTCTTACATATGTATGTGATCCAGTGATGGGTGATGAAGGAAAGCTTTATGTTCCTCAAGAGCTAGTATCAGTCTATCGTGAGAAGGTTGTCCCAGTAGCTTCAGTGTTGACTCCCAACCAGTTTGAGGCAGAACTACTGACAGGCTTCAGGATTCAGTCTGAAGGACATGGGCGGGAGGCCTGTAGGCTTCTCCATGCAGCTGGGCCTTCAAAGGTCATAATTACAAGTATAAATATAGACGGGATTCTTCTCCTCATTGGCAGTCATCAAAAAGAAAAGGGAGAGCCTCCTAGACAATTTAGGATCGTGATTCCAAAAATACCAGCTTATTTTACGGGAACGGGAGATCTCATGACTGCACTTCTTCTTGGTTGGAGCAATAAATACCCAGACAACCTTGAGATTGCTGCAGAACTTGCAGTGTCAAGCTTGCAGGCAGTTTTGCACAGGACACTTAGTGACTACAAAAGCGCTGGACATGATTCTGAGTCAACCAGTTTAGAGATTAGATTAATTCAAAGTCAGGATGATATTCGCACCCCACAAGTAAAACTTAAAGCTGAAATATACAGCTAA

Predicted protein sequences of Glyma11g33970

Limit To All Plant Sequences

>Glyma11g33970.1   sequence type=predicted peptide   gene model=Glyma11g33970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNVDAGVGCLSVEHCSMLLKPPFTLSHRFNFRFSCQTRIFRARNSRNSRMAPPILSLALPSNTGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPINSVQFSNHTGYPTFKGQVLNGQQLWDLIEGLEGNDLLFYTHLLTGYIGSESFLNTVLQVVNKLRSTNPGLTYVCDPVMGDEGKLYVPQELVSVYREKVVPVASVLTPNQFEAELLTGFRIQSEGHGREACRLLHAAGPSKVIITSINIDGILLLIGSHQKEKGEPPRQFRIVIPKIPAYFTGTGDLMTALLLGWSNKYPDNLEIAAELAVSSLQAVLHRTLSDYKSAGHDSESTSLEIRLIQSQDDIRTPQVKLKAEIYS*

>Glyma11g33970.2   sequence type=predicted peptide   gene model=Glyma11g33970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAPPILSLALPSNTGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPINSVQFSNHTGYPTFKGQVLNGQQLWDLIEGLEGNDLLFYTHLLTGYIGSESFLNTVLQVVNKLRSTNPGLTYVCDPVMGDEGKLYVPQELVSVYREKVVPVASVLTPNQFEAELLTGFRIQSEGHGREACRLLHAAGPSKGTGDLMTALLLGWSNKYPDNLEIAAELAVSSLQAVLHRTLSDYKSAGHDSESTSLEIRLIQSQDDIRTPQVKLKAEIYS*

>Glyma11g33970.3   sequence type=predicted peptide   gene model=Glyma11g33970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAPPILSLALPSNTGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPINSVQFSNHTGYPTFKGQVLNGQQLWDLIEGLEGNDLLFYTHLLTGYIGSESFLNTVLQVVNKLRSTNPGLTYVCDPVMGDEGKLYVPQELVSVYREKVVPVASVLTPNQFEAELLTGFRIQSEGHGREACRLLHAAGPSKVIITSINIDGILLLIGSHQKEKGEPPRQFRIVIPKIPAYFTGTGDLMTALLLGWSNKYPDNLEIAAELAVSSLQAVLHRTLSDYKSAGHDSESTSLEIRLIQSQDDIRTPQVKLKAEIYS*

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