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Report for Sequence Feature Glyma11g33760

Feature Type:gene_model
Chromosome:Gm11
Start:35629499
stop:35632037
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma11g33760
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G17980AT Annotation by Michelle Graham. TAIR10: Calcium-dependent lipid-binding (CaLB domain) family protein | chr3:6152417-6153115 FORWARD LENGTH=177 SoyBaseE_val: 6.00E-81ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
KOG1030 KOG Predicted Ca2+-dependent phospholipid-binding protein JGI ISS
PTHR26357Panther FAMILY NOT NAMED JGI ISS
PTHR26357:SF5Panther JGI ISS
PF00168PFAM C2 domain JGI ISS
UniRef100_B9T6Z1UniRef Annotation by Michelle Graham. Most informative UniRef hit: ARF GTPase activator, putative n=1 Tax=Ricinus communis RepID=B9T6Z1_RICCO SoyBaseE_val: 3.00E-85ISS
UniRef100_C6SYG2UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SYG2_SOYBN SoyBaseE_val: 8.00E-116ISS

Expression Patterns of Glyma11g33760
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g33760
ParalogEvidenceComments
Glyma18g04470 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g33760 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.11g216900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma11g33760
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma11g33760
>Glyma11g33760.1   sequence type=CDS   gene model=Glyma11g33760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGAACTTGTTGGGTCTGCTGAGAATTCATGTTGAAAAAGGTGTCAATCTTGCCATCAGGGATGTGGTGAGCAGTGACCCTTATGTTGTCATCAAAATGGGCAAGCAGAAGCTGAAGACTCGGGTAGTCAATAAGAATCTAAATCCTGAATGGAATGATGACTTGACCTTGTCTATCTCTGACCCTCATGCTCCAATTCATCTACATGTGTATGACAAGGACACATTTAGCATGGATGACAAAATGGGGGATGCAGAGTTTTTCATAGGTCCATTTATTGAAGCAGTGAAGATGCGCTTATCAAGTCTCCCCAACAATACTATAGTTACAAAAGTGCTACCTAGCAGACAAAACAGTTTAGCTGAAGAGAGTCACATTGTGTGGAAGGATGGCAAAGTTGTCCAAAACATGGTTCTTAGACTAAGAAATGTTGAGACTGGGGAAGTGGAGCTCCAGTTGCATTGGATTGACATTCCTGGTTCAAGGCATCTCTAG
Predicted protein sequences of Glyma11g33760
>Glyma11g33760.1   sequence type=predicted peptide   gene model=Glyma11g33760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MENLLGLLRIHVEKGVNLAIRDVVSSDPYVVIKMGKQKLKTRVVNKNLNPEWNDDLTLSISDPHAPIHLHVYDKDTFSMDDKMGDAEFFIGPFIEAVKMRLSSLPNNTIVTKVLPSRQNSLAEESHIVWKDGKVVQNMVLRLRNVETGEVELQLHWIDIPGSRHL*






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