Glyma11g33700 - SoyBase

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Report for Sequence Feature Glyma11g33700

Feature Type:	gene_model
Chromosome:	Gm11
Start:	35532755
stop:	35538085
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma11g33700

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G16710	AT	Annotation by Michelle Graham. TAIR10: dehydroascorbate reductase 1 \| chr5:5483312-5484926 FORWARD LENGTH=258	SoyBase	E_val: 1.00E-124	ISS
GO:0009407	GO-bp	Annotation by Michelle Graham. GO Biological Process: toxin catabolic process	SoyBase	N/A	ISS
GO:0010027	GO-bp	Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization	SoyBase	N/A	ISS
GO:0010583	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cyclopentenone	SoyBase	N/A	ISS
GO:0010731	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein glutathionylation	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0045174	GO-mf	Annotation by Michelle Graham. GO Molecular Function: glutathione dehydrogenase (ascorbate) activity	SoyBase	N/A	ISS
KOG1422	KOG	Intracellular Cl- channel CLIC, contains GST domain	JGI		ISS
PTHR11260	Panther	GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING	JGI		ISS
PTHR11260:SF15	Panther	GLUTATHIONE-S-TRANSFERASE-RELATED	JGI		ISS
PF02798	PFAM	Glutathione S-transferase, N-terminal domain	JGI		ISS
UniRef100_I1LMC5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LMC5_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q4JR86	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Dehydroascorbate reductase n=1 Tax=Glycine max RepID=Q4JR86_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma11g33700

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma11g33700

Paralog	Evidence	Comments
Glyma18g04510	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma11g33700 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.11g216400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma11g33700

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma11g33700

Limit To All Plant Sequences

>Glyma11g33700.4   sequence type=transcript   gene model=Glyma11g33700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGTTGTGGAAACGTTGTATAGTGCCACGTAAACATCGCGGGAACCAAAAGCACAACAACGCAACATCATCATCAGCTTCAGCAATGTCCACTGTGAGAGTTCAAGTTTCGGCGTGTGTGTTTTCTGCCACCGTCAACAACCTTTGCCTCCGCCAAAACGCCGTCGTTTCCTTCAGAAAGAAGAAGCTTCTCAGATTGGTCTCAATGTCTTCCGTTCCTCCTTCCCAACCCTTCGAAATCGCCGTTAAAGCTTCCGTCACCACACCCAACAGGCTCGGCGACTGCCCTTTTTGCCAAAGGGTGTTGCTGACACTGGAGGAAAAACATCTACCTTATGACCCCAAGTTGGTGGATTTGACCAACAAGCCAGAATGGTTCCTTAAAGTCAATCCTGATGGTAAAGTTCCTGTCATAAAGTTTGATGAGAAGTGGGTTCCTGATTCAGATATTATTACTCAAACATTGGAAGAGAAGTATCCCAGCCCCCCATTGTTGACCCCACCTGAAAAGGCCACGGCGGGGTCAAAGATCTTTTCAACATTTATTGGTTTTCTCAAGAGCAAGGATCCCAATGATGGAACAGAACAAGCATTACTTAGTGAACTGAGCTCTTTCAGTGATTACATCAAGGAAAATGGTCCTTTCATCAACGGTAGTGAGATATCTGCAGCTGACCTATCACTTGGACCAAAGCTATACCATTTAGAGATTGCTTTGGGGCATTATAAGAAATGGACAGTGCCTGATTCACTTACCTCTTTGAAGTCTTATATGAAGGTATGTTCAAGATGAGCCTAACCATTCAACATCATATCATTTTTCCTGTACTTTAAGGAACTTTTCAAATCTAGAATTGTGTGCAGGAGGCTACTTTAGTAGATTCATATGTATGCTGACGATGTTTCTCAAACATTAATAATAGTTAAGAAAATTTGTGGAAATCGTATTTCAAAAGATATTCTGCATTGTCCGTGTCAGTGTTATCAATGGCGGATGGCGGAAGGTCGAAATTCCACCATATAAACATGCCATTGCGCCTTATGGAACCACCATGGCAGGTCTCCCTTCACAAATTGCCTATAGTGATTGGCAAAAAAATCACCACGCCATTCCATCATGGCGGCACCTTAATTTGGAATTTCTTCAGAACACAAAACTCAAATATTTCACTAAAGATGCAGAAGATGTTTTTGCTTCTGCATACCTTGAATGTTTTACAGGTAAGAGTGCTATAAAG

Coding sequences of Glyma11g33700

Limit To All Plant Sequences

>Glyma11g33700.3   sequence type=CDS   gene model=Glyma11g33700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGTTGTGGAAACGTTGTATAGTGCCACGTAAACATCGCGGGAACCAAAAGCACAACAACGCAACATCATCATCAGCTTCAGCAATGTCCACTGTGAGAGTTCAAGTTTCGGCGTGTGTGTTTTCTGCCACCGTCAACAACCTTTGCCTCCGCCAAAACGCCGTCGTTTCCTTCAGAAAGAAGAAGCTTCTCAGATTGGTCTCAATGTCTTCCGTTCCTCCTTCCCAACCCTTCGAAATCGCCGTTAAAGCTTCCGTCACCACACCCAACAGGCTCGGCGACTGCCCTTTTTGCCAAAGGGTGTTGCTGACACTGGAGGAAAAACATCTACCTTATGACCCCAAGTTGGTGGATTTGACCAACAAGCCAGAATGGTTCCTTAAAGTCAATCCTGATGGTAAAGTTCCTGTCATAAAGTTTGATGAGAAGTGGGTTCCTGATTCAGATATTATTACTCAAACATTGGAAGAGAAGTATCCCAGCCCCCCATTGTTGACCCCACCTGAAAAGGCCACGGCGGGGTCAAAGATCTTTTCAACATTTATTGGTTTTCTCAAGAGCAAGGATCCCAATGATGGAACAGAACAAGCATTACTTAGTGAACTGAGCTCTTTCAGTGATTACATCAAGGAAAATGGTCCTTTCATCAACGGTAGTGAGATATCTGCAGCTGACCTATCACTTGGACCAAAGCTATACCATTTAGAGATTGCTTTGGGGCATTATAAGAAATGGACAGTGCCTGATTCACTTACCTCTTTGAAGTCTTATATGAAGGTCATTTTCTCGAGGGAATCGTTCGTTAAAACAAGTGCACAACCACAGGATGTCATTGAAGGTTGGCGTCCTAAAGTGGAAGGCTAA

>Glyma11g33700.4   sequence type=CDS   gene model=Glyma11g33700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGTTGTGGAAACGTTGTATAGTGCCACGTAAACATCGCGGGAACCAAAAGCACAACAACGCAACATCATCATCAGCTTCAGCAATGTCCACTGTGAGAGTTCAAGTTTCGGCGTGTGTGTTTTCTGCCACCGTCAACAACCTTTGCCTCCGCCAAAACGCCGTCGTTTCCTTCAGAAAGAAGAAGCTTCTCAGATTGGTCTCAATGTCTTCCGTTCCTCCTTCCCAACCCTTCGAAATCGCCGTTAAAGCTTCCGTCACCACACCCAACAGGCTCGGCGACTGCCCTTTTTGCCAAAGGGTGTTGCTGACACTGGAGGAAAAACATCTACCTTATGACCCCAAGTTGGTGGATTTGACCAACAAGCCAGAATGGTTCCTTAAAGTCAATCCTGATGGTAAAGTTCCTGTCATAAAGTTTGATGAGAAGTGGGTTCCTGATTCAGATATTATTACTCAAACATTGGAAGAGAAGTATCCCAGCCCCCCATTGTTGACCCCACCTGAAAAGGCCACGGCGGGGTCAAAGATCTTTTCAACATTTATTGGTTTTCTCAAGAGCAAGGATCCCAATGATGGAACAGAACAAGCATTACTTAGTGAACTGAGCTCTTTCAGTGATTACATCAAGGAAAATGGTCCTTTCATCAACGGTAGTGAGATATCTGCAGCTGACCTATCACTTGGACCAAAGCTATACCATTTAGAGATTGCTTTGGGGCATTATAAGAAATGGACAGTGCCTGATTCACTTACCTCTTTGAAGTCTTATATGAAGGTATGTTCAAGATGA

Predicted protein sequences of Glyma11g33700

Limit To All Plant Sequences

>Glyma11g33700.3   sequence type=predicted peptide   gene model=Glyma11g33700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMLWKRCIVPRKHRGNQKHNNATSSSASAMSTVRVQVSACVFSATVNNLCLRQNAVVSFRKKKLLRLVSMSSVPPSQPFEIAVKASVTTPNRLGDCPFCQRVLLTLEEKHLPYDPKLVDLTNKPEWFLKVNPDGKVPVIKFDEKWVPDSDIITQTLEEKYPSPPLLTPPEKATAGSKIFSTFIGFLKSKDPNDGTEQALLSELSSFSDYIKENGPFINGSEISAADLSLGPKLYHLEIALGHYKKWTVPDSLTSLKSYMKVIFSRESFVKTSAQPQDVIEGWRPKVEG*

>Glyma11g33700.4   sequence type=predicted peptide   gene model=Glyma11g33700   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMLWKRCIVPRKHRGNQKHNNATSSSASAMSTVRVQVSACVFSATVNNLCLRQNAVVSFRKKKLLRLVSMSSVPPSQPFEIAVKASVTTPNRLGDCPFCQRVLLTLEEKHLPYDPKLVDLTNKPEWFLKVNPDGKVPVIKFDEKWVPDSDIITQTLEEKYPSPPLLTPPEKATAGSKIFSTFIGFLKSKDPNDGTEQALLSELSSFSDYIKENGPFINGSEISAADLSLGPKLYHLEIALGHYKKWTVPDSLTSLKSYMKVCSR*

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