SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G37510 | AT | Annotation by Michelle Graham. TAIR10: NADH-ubiquinone dehydrogenase, mitochondrial, putative | chr5:14897490-14900447 FORWARD LENGTH=748 | SoyBase | E_val: 0 | ISS |
| GO:0006511 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process | SoyBase | N/A | ISS |
| GO:0006979 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to oxidative stress | SoyBase | N/A | ISS |
| GO:0009630 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gravitropism | SoyBase | N/A | ISS |
| GO:0009793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy | SoyBase | N/A | ISS |
| GO:0009853 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photorespiration | SoyBase | N/A | ISS |
| GO:0042773 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ATP synthesis coupled electron transport | SoyBase | N/A | ISS |
| GO:0045333 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular respiration | SoyBase | N/A | ISS |
| GO:0051788 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to misfolded protein | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0080129 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteasome core complex assembly | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0005747 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial respiratory chain complex I | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0031966 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial membrane | SoyBase | N/A | ISS |
| GO:0045271 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: respiratory chain complex I | SoyBase | N/A | ISS |
| GO:0003954 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: NADH dehydrogenase activity | SoyBase | N/A | ISS |
| GO:0008137 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: NADH dehydrogenase (ubiquinone) activity | SoyBase | N/A | ISS |
| GO:0009055 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: electron carrier activity | SoyBase | N/A | ISS |
| GO:0016491 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity | SoyBase | N/A | ISS |
| GO:0016651 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on NAD(P)H | SoyBase | N/A | ISS |
| GO:0051536 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: iron-sulfur cluster binding | SoyBase | N/A | ISS |
| KOG2282 | KOG | NADH-ubiquinone oxidoreductase, NDUFS1/75 kDa subunit | JGI | ISS | |
| PTHR11615 | Panther | NITRATE, FROMATE, IRON DEHYDROGENASE | JGI | ISS | |
| PTHR11615:SF10 | Panther | FORMATE DEHYDROGENASE | JGI | ISS | |
| PF00111 | PFAM | 2Fe-2S iron-sulfur cluster binding domain | JGI | ISS | |
| PF00384 | PFAM | Molybdopterin oxidoreductase | JGI | ISS | |
| PF09326 | PFAM | Domain of unknown function (DUF1982) | JGI | ISS | |
| PF10588 | PFAM | NADH-ubiquinone oxidoreductase-G iron-sulfur binding region | JGI | ISS | |
| UniRef100_G7J8R4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: NADH-ubiquinone oxidoreductase subunit n=1 Tax=Medicago truncatula RepID=G7J8R4_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LMA5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LMA5_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma11g33480 not represented in the dataset |
Glyma11g33480 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma18g04730 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.11g214800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma11g33480.1 sequence type=CDS gene model=Glyma11g33480 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGGTTGGGTTTGTTAGCTTCGAAGGCCATAAGACCCACCTCAAGGCTCCTCCTCGGTTCCCAAAACCCTACCACTTTTCTCCTCCGAACCATCGTCTCCAAGCCTGAGCTTCGGAATCCCGAAGCCAGCGCCGCACAGCCGGAGCAGCCGCCGGCGCCCGATCTCCCGCCGCGGACTCCGCTCGCCGGCGCCCGCGTCCACTTCTCGAACCCCGAGGACGCCATCGAGGTGTTCGTGGATGGCTACCCCGTGAAAATCCCGAAAGGAATGACCGTTCTTCAGGCCTGCGAGGTCGCCGGCGTCGACATCCCGAGGTTCTGCTACCACAGCAGACTCTCCATCGCCGGAAACTGCCGCATGTGCCTCGTCGAGGTCGAGAAATCGCCCAAACCTGTCGCCTCTTGCGCCATGCCCGCTCTCCCTGGGATGAAAATTAAGACTGACACACCTGTTGCAAAGAAGGCTCGAGAAGGAGTGATGGAGTTTTTATTGATGAATCATCCATTAGATTGCCCAATTTGTGATCAGGGTGGGGAATGTGATCTTCAGGATCAGTCAATGGCATTTGGCTCTGATCGTGGGCGGTTCACTGAAGTGAAGAGATCTGTGGTAGATAAAAATCTTGGACCTCTGGTGAAGACTGTGATGACTCGGTGCATTCAATGTACAAGGTGTGTTAGATTTGCAACAGAGGTTGCTGGGGTTCAGGATCTTGGCATGTTAGGTCGTGGCAGTGGAGAGGAGATTGGAACATATGTTGAAAAACTTTTGACAAGTGAGCTTTCTGGAAATGTCATAGATATCTGTCCCGTGGGAGCTCTCACGTCAAAACCTTTTGCATTTAAAGCCCGGAATTGGGAGTTGAAGGGCACAGAGACCATTGATGTTACTGATGCAGTTGGATCCAATATTCGAATTGATAGCAGAGGACCTGAAGTGATGCGCATTGTTCCTCGTTTAAATGAGGACATAAATGAAGAATGGATTTCAGACAAAACCCGCTTTTGTTATGATGGTTTGAAAAGGCAGAGGTTAAATGACCCCATGATTCGTGGTTCTGATGGACGCTTTAAGCCTGTTAACTGGCGTGATGCTCTTGCTGTGGTAGCAGAGGTTGCCCACCAAGTCAAACCGGAAGAAATTGTTGGCATAGCTGGCAAACTTTCTGATGCTGAGTCCATGATTGCACTAAAAGATTTCATAAATAGGATGGGGTCAAATGATGTATGGGGTGAAGGCATTGGTGTAAATACTAATGCTGATTTCAGATCAGGATATATTATGAATACTAGCATTGCTGGTCTTGAAAAAGCGGATGCGTTCCTGTTGGTTGGCACCCAGCCACGGGTGGAAGCTGCCATGGTTAATGCCAGAATACGCAAAACTGTCAGAGCAAACCAAGCCAAAGTTGGGTACATTGGGCCTGCCACTGATTTCAACTACGATCACAGACATCTTGGTACTGGCCCTCAAACACTCCTTGAAATTGCTGAGGGTTGCCACCCATTTTTCAAGACACTCTCAAATGCCAAAAACCCTGTTATCATTGTCGGTGCTGGGGTTTTTGAGAGGAAGGATCAGGATGCAATTTTTGCTGCTGTTGAAACCATTGCACAAAAAGCAAATGTTGTCAGACCTGACTGGAATGGCCTTAATGTATTGCTTCTCCATGCTGCCCAGGCTGCTGCGCTTGACCTTGGACTTGTTCCACAATCTGAGAAAAGCCTTGAGTCTGCAAAATTTGTATATTTGATGGGTGCTGATGATGTTAACTTAGACAAGATCCCAGATGATGCTTTTGTTGTTTATCAAGGTCACCACGGTGACAAGAGTGTTTATCGGGCAAATGTTGTTTTGCCAGCAGCAGCATTCAGTGAGAAGGAAGGGACCTATGAAAATACCGATGGTTTCTCACAACAAACATTGCCTGCAGTTCCAACAGTTGGTGACTCCAGAGATGATTGGAAGATAATTCGAGCTCTATCTGAGGTGGCAGGAGTGCGTTTGCCCTATGATACAATTGGGGCCGTTCGTGCTCGAATCAGTACTGTAGCCCCAAACCTTGTGAAAATGGATGAGAGAGAGCCTGCCACATTACCATCTTCACTCAGACCAACCTTCTCTGAGAAGGTGGACACCACCCCATTCGGGACTGTAGTTGAGAATTTCTATATGACTGATGCCATTACAAGGGCATCAAAGATAATGGCACAATGCAGTGCCATGCTGTTGAAGAAGTGA
>Glyma11g33480.1 sequence type=predicted peptide gene model=Glyma11g33480 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGLGLLASKAIRPTSRLLLGSQNPTTFLLRTIVSKPELRNPEASAAQPEQPPAPDLPPRTPLAGARVHFSNPEDAIEVFVDGYPVKIPKGMTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPALPGMKIKTDTPVAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEVKRSVVDKNLGPLVKTVMTRCIQCTRCVRFATEVAGVQDLGMLGRGSGEEIGTYVEKLLTSELSGNVIDICPVGALTSKPFAFKARNWELKGTETIDVTDAVGSNIRIDSRGPEVMRIVPRLNEDINEEWISDKTRFCYDGLKRQRLNDPMIRGSDGRFKPVNWRDALAVVAEVAHQVKPEEIVGIAGKLSDAESMIALKDFINRMGSNDVWGEGIGVNTNADFRSGYIMNTSIAGLEKADAFLLVGTQPRVEAAMVNARIRKTVRANQAKVGYIGPATDFNYDHRHLGTGPQTLLEIAEGCHPFFKTLSNAKNPVIIVGAGVFERKDQDAIFAAVETIAQKANVVRPDWNGLNVLLLHAAQAAALDLGLVPQSEKSLESAKFVYLMGADDVNLDKIPDDAFVVYQGHHGDKSVYRANVVLPAAAFSEKEGTYENTDGFSQQTLPAVPTVGDSRDDWKIIRALSEVAGVRLPYDTIGAVRARISTVAPNLVKMDEREPATLPSSLRPTFSEKVDTTPFGTVVENFYMTDAITRASKIMAQCSAMLLKK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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